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{{UBERON
{{UBERON
|id=UBERON:0006524
|alt_id=
|name=alveolar system
|namespace=
|def="System pertaining to a bronchus and alveoli." [BTO:0000136]
|xref=BTO:0000136;;EMAPA:19001;;EMAPA:19003;;EMAPA:19005;;EMAPA:19007;;EMAPA:19009;;MA:0000416
|is_a=UBERON:0000077;;UBERON:0000467
|synonym="bronchoalveolar system" RELATED [BTO:0000136];;"pulmonary alveolar system" EXACT [MP:0010899]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="System pertaining to a bronchus and alveoli." [BTO:0000136]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0006524
|is_a=UBERON:0000467 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|name=alveolar system
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002048
|part_of=UBERON:0002048
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="bronchoalveolar system" RELATED [BTO:0000136];;"pulmonary alveolar system" EXACT [MP:0010899]
|union_of=
|xref=BTO:0000136;;EMAPA:19001;;EMAPA:19003;;EMAPA:19005;;EMAPA:19007;;EMAPA:19009;;MA:0000416
}}
}}

Latest revision as of 17:57, 12 September 2014

Name:alveolar system
Namespace:FANTOM
Definition:"System pertaining to a bronchus and alveoli." [BTO:0000136]
Xrefs:
links:

BTO:0000136
EMAPA:19001
EMAPA:19003
EMAPA:19005
EMAPA:19007
EMAPA:19009

MA:0000416
Synonyms: "bronchoalveolar system" RELATED [BTO:0000136]
"pulmonary alveolar system" EXACT [MP:0010899]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000467(anatomical system),UBERON:0004119(endoderm-derived structure)
part_of:UBERON:0002048(lung)



Children

part of:UBERON:0002169 (alveolar sac),UBERON:0002173 (alveolar duct),UBERON:0002299 (alveolus of lung)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006524 (alveolar system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.39e-66FFCP PHASE2:Hg19::chr17:13574618..13574636,-#_1edd31298310cddc31c6242ea2c262c9p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE1:Hg19::chr17:63511856..63511858,-#_1edd31298310cddc31c6242ea2c262c9p@chr17:63511856..63511858, -
2.39e-66FFCP PHASE1:Hg19::chr10:101691056..101691064,-#_1edd31298310cddc31c6242ea2c262c9p13@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_1edd31298310cddc31c6242ea2c262c9p16@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr17:13574618..13574636,-#_1edd31298310cddc31c6242ea2c262c9p@chr17:13574618..13574636, -
2.39e-66FFCP PHASE2:Hg19::chr20:2779313..2779314,-#_1edd31298310cddc31c6242ea2c262c9p16@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr14:36536932..36536937,-#_1edd31298310cddc31c6242ea2c262c9p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE1:Hg19::chr6:137314390..137314394,-#_1edd31298310cddc31c6242ea2c262c9p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE2:Hg19::chr10:101690855..101690861,-#_1edd31298310cddc31c6242ea2c262c9p14@DNMBP
2.39e-66FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_1edd31298310cddc31c6242ea2c262c9p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr6:137314390..137314394,-#_1edd31298310cddc31c6242ea2c262c9p1@ENST00000418699, p1@ENST00000432330
2.39e-66FFCP PHASE2:Hg19::chr3:87647430..87647437,-#_1edd31298310cddc31c6242ea2c262c9p@chr3:87647430..87647437, -
2.39e-66FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_1edd31298310cddc31c6242ea2c262c9p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr20:2779140..2779150,-#_1edd31298310cddc31c6242ea2c262c9p9@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr7:63539651..63539654,+#_1edd31298310cddc31c6242ea2c262c9p1@ENST00000430271
2.39e-66FFCP PHASE2:Hg19::chr10:101691056..101691064,-#_1edd31298310cddc31c6242ea2c262c9p13@DNMBP
2.39e-66FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_1edd31298310cddc31c6242ea2c262c9p9@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_1edd31298310cddc31c6242ea2c262c9p1@ENST00000430271
2.39e-66FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_1edd31298310cddc31c6242ea2c262c9p@chr14:36536932..36536937, -
2.39e-66FFCP PHASE1:Hg19::chr20:2779199..2779205,-#_1edd31298310cddc31c6242ea2c262c9p13@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr20:2779199..2779205,-#_1edd31298310cddc31c6242ea2c262c9p13@CPXM1
2.39e-66FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_1edd31298310cddc31c6242ea2c262c9p12@CLEC16A
2.39e-66FFCP PHASE1:Hg19::chr10:101690855..101690861,-#_1edd31298310cddc31c6242ea2c262c9p14@DNMBP
2.39e-66FFCP PHASE1:Hg19::chrX:48056224..48056233,-#_1edd31298310cddc31c6242ea2c262c9p1@SSX5
2.39e-66FFCP PHASE1:Hg19::chr20:2779236..2779242,-#_1edd31298310cddc31c6242ea2c262c9p12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_1edd31298310cddc31c6242ea2c262c9p12@CPXM1
2.39e-66FFCP PHASE2:Hg19::chrX:48056224..48056233,-#_1edd31298310cddc31c6242ea2c262c9p1@SSX5
2.39e-66FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_1edd31298310cddc31c6242ea2c262c9p@chr17:63511856..63511858, -
1.53e-44FFCP PHASE2:Hg19::chr2:191696381..191696384,-#_c13579dda88dd68d06341dbd0bf6737dp@chr2:191696381..191696384, -
1.53e-44FFCP PHASE1:Hg19::chr2:191696381..191696384,-#_c13579dda88dd68d06341dbd0bf6737dp@chr2:191696381..191696384, -
4.27e-34FFCP PHASE1:Hg19::chr9:103785643..103785646,-#_540fd12e426902c33ae918afc603f076p@chr9:103785643..103785646, -
4.27e-34FFCP PHASE2:Hg19::chr11:41809203..41809208,-#_540fd12e426902c33ae918afc603f076p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE2:Hg19::chr11:106266838..106266843,+#_540fd12e426902c33ae918afc603f076p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chr9:140350189..140350212,-#_540fd12e426902c33ae918afc603f076p30@NELF
4.27e-34FFCP PHASE2:Hg19::chr9:140350189..140350212,-#_540fd12e426902c33ae918afc603f076p30@NELF
4.27e-34FFCP PHASE2:Hg19::chr10:101691199..101691208,-#_540fd12e426902c33ae918afc603f076p11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr8:122157279..122157284,-#_540fd12e426902c33ae918afc603f076p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr11:104005546..104005596,-#_540fd12e426902c33ae918afc603f076p@chr11:104005546..104005596, -
4.27e-34FFCP PHASE1:Hg19::chr4:169956294..169956301,-#_540fd12e426902c33ae918afc603f076p@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr8:122157279..122157284,-#_540fd12e426902c33ae918afc603f076p@chr8:122157279..122157284, -
4.27e-34FFCP PHASE1:Hg19::chr10:101691101..101691115,-#_540fd12e426902c33ae918afc603f076p7@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr4:169956294..169956301,-#_540fd12e426902c33ae918afc603f076p@chr4:169956294..169956301, -
4.27e-34FFCP PHASE1:Hg19::chr11:41809203..41809208,-#_540fd12e426902c33ae918afc603f076p@chr11:41809203..41809208, -
4.27e-34FFCP PHASE1:Hg19::chr11:106266838..106266843,+#_540fd12e426902c33ae918afc603f076p@chr11:106266838..106266843, +
4.27e-34FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_540fd12e426902c33ae918afc603f076p3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_540fd12e426902c33ae918afc603f076p3@FMR1NB
4.27e-34FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_540fd12e426902c33ae918afc603f076p30@PDP1
4.27e-34FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_540fd12e426902c33ae918afc603f076p30@PDP1
4.27e-34FFCP PHASE2:Hg19::chr11:104005546..104005596,-#_540fd12e426902c33ae918afc603f076p@chr11:104005546..104005596, -
4.27e-34FFCP PHASE2:Hg19::chr10:101691101..101691115,-#_540fd12e426902c33ae918afc603f076p7@DNMBP
4.27e-34FFCP PHASE1:Hg19::chr10:101691199..101691208,-#_540fd12e426902c33ae918afc603f076p11@DNMBP
4.27e-34FFCP PHASE2:Hg19::chr9:103785643..103785646,-#_540fd12e426902c33ae918afc603f076p@chr9:103785643..103785646, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399294..45399301, +
5.96e-34FFCP PHASE1:Hg19::chr1:119837700..119837705,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr1:119837700..119837705, +
5.96e-34FFCP PHASE1:Hg19::chr1:93054640..93054674,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr9:140349915..140349924,-#_fc8fd842991fbce6fcc23a27c96c0be7p34@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45405332..45405343, +
5.96e-34FFCP PHASE2:Hg19::chr1:119837700..119837705,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr1:119837700..119837705, +
5.96e-34FFCP PHASE2:Hg19::chr1:93054640..93054674,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr1:93054640..93054674, -
5.96e-34FFCP PHASE1:Hg19::chr15:55806847..55806854,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr2:118846114..118846125,+#_fc8fd842991fbce6fcc23a27c96c0be7p6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr17:63533845..63533851,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr17:63533845..63533851, -
5.96e-34FFCP PHASE1:Hg19::chr12:65386452..65386492,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr12:65386452..65386492, -
5.96e-34FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr17:63533845..63533851,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr17:63533845..63533851, -
5.96e-34FFCP PHASE2:Hg19::chr2:118846114..118846125,+#_fc8fd842991fbce6fcc23a27c96c0be7p6@INSIG2
5.96e-34FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45405393..45405412, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399533..45399540, +
5.96e-34FFCP PHASE2:Hg19::chr3:139035972..139036016,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr3:139035972..139036016, -
5.96e-34FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399533..45399540, +
5.96e-34FFCP PHASE1:Hg19::chr3:139035972..139036016,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr3:139035972..139036016, -
5.96e-34FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399245..45399258, +
5.96e-34FFCP PHASE1:Hg19::chr20:2795718..2795731,+#_fc8fd842991fbce6fcc23a27c96c0be7p5@C20orf141
5.96e-34FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399245..45399258, +
5.96e-34FFCP PHASE2:Hg19::chr20:2795718..2795731,+#_fc8fd842991fbce6fcc23a27c96c0be7p5@C20orf141
5.96e-34FFCP PHASE1:Hg19::chr4:171012844..171012850,-#_fc8fd842991fbce6fcc23a27c96c0be7p12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr6:46985426..46985427,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:46985426..46985427, -
5.96e-34FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr15:55806847..55806854,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr15:55806847..55806854, -
5.96e-34FFCP PHASE1:Hg19::chr6:169691363..169691375,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr6:46985426..46985427,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:46985426..46985427, -
5.96e-34FFCP PHASE2:Hg19::chr4:171012844..171012850,-#_fc8fd842991fbce6fcc23a27c96c0be7p12@AADAT
5.96e-34FFCP PHASE1:Hg19::chr9:140349856..140349859,-#_fc8fd842991fbce6fcc23a27c96c0be7p36@NELF
5.96e-34FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399263..45399274, +
5.96e-34FFCP PHASE2:Hg19::chr12:65386452..65386492,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr12:65386452..65386492, -
5.96e-34FFCP PHASE2:Hg19::chr6:169691363..169691375,-#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:169691363..169691375, -
5.96e-34FFCP PHASE2:Hg19::chr9:140349856..140349859,-#_fc8fd842991fbce6fcc23a27c96c0be7p36@NELF
5.96e-34FFCP PHASE1:Hg19::chr6:141743015..141743025,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:45399294..45399301, +
5.96e-34FFCP PHASE2:Hg19::chr6:141743015..141743025,+#_fc8fd842991fbce6fcc23a27c96c0be7p@chr6:141743015..141743025, +
5.96e-34FFCP PHASE1:Hg19::chr9:140349915..140349924,-#_fc8fd842991fbce6fcc23a27c96c0be7p34@NELF
1.71e-30FFCP PHASE1:Hg19::chr2:75751179..75751194,+#_44efeb05991cb8d991e5581b42f5657ap1@BC018659
1.71e-30FFCP PHASE2:Hg19::chr2:75751179..75751194,+#_44efeb05991cb8d991e5581b42f5657ap1@BC018659
1.59e-27FFCP PHASE1:Hg19::chr14:29047235..29047244,+#_3625203c4110a0f0775573e25c542bcep@chr14:29047235..29047244, +
1.59e-27FFCP PHASE2:Hg19::chr14:29047235..29047244,+#_3625203c4110a0f0775573e25c542bcep@chr14:29047235..29047244, +
3.56e-27FFCP PHASE2:Hg19::chr17:171082..171101,+#_ac84bba742806edb24364c09c8a81de3p@chr17:171082..171101, +
3.56e-27FFCP PHASE1:Hg19::chr17:171082..171101,+#_ac84bba742806edb24364c09c8a81de3p@chr17:171082..171101, +
7.93e-25FFCP PHASE1:Hg19::chr7:27163592..27163605,-#_b51e41287c90996db5972ab3be58d84fp@chr7:27163592..27163605, -
7.93e-25FFCP PHASE2:Hg19::chr7:27163592..27163605,-#_b51e41287c90996db5972ab3be58d84fp@chr7:27163592..27163605, -

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