Personal tools

UBERON:0003082: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003082
|alt_id=UBERON:XAO_0000315-ZFA_0001056
|name=myotome
|namespace=
|def="A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
|xref=AAO:0011067;;BTO:0000742;;EHDAA2:0003431;;EHDAA:1721;;EHDAA:1727;;EHDAA:1733;;EHDAA:1739;;http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png;;ncithesaurus:Myotome_Region;;SCTID:344535001;;TAO:0001056;;VHOG:0001244;;XAO:0000315;;ZFA:0001056
|is_a=UBERON:0000490;;UBERON:0004120;;UBERON:0005291
|synonym="muscle plate" RELATED [];;"myomere" RELATED [];;"myotome region" RELATED [];;"myotomes" RELATED [];;"myotomus" RELATED LATIN [Wikipedia:Myotome]
|comment=Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
|comment=Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
|alt_id=UBERON:XAO_0000315-ZFA_0001056
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
|subset=uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=UBERON:0004290
|develops_from=UBERON:0002329;;UBERON:0004290
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003082
|is_a=UBERON:0017650
|is_obsolete=
|located_in=
|located_in=
|name=myotome
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000926
|part_of=UBERON:0000926
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string
|is_obsolete=
|subset=uberon_slim;;vertebrate_core
|preceded_by=
|synonym="muscle plate" RELATED [];;"myomere" RELATED [];;"myotome region" RELATED [];;"myotomes" RELATED [];;"myotomus" RELATED LATIN [Wikipedia:Myotome]
|union_of=
|xref=AAO:0011067;;BTO:0000742;;EHDAA2:0003431;;EHDAA:1721;;EHDAA:1727;;EHDAA:1733;;EHDAA:1739;;http://upload.wikimedia.org/wikipedia/commons/9/96/Gray65.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/9/96/Gray65.png/200px-Gray65.png;;ncithesaurus:Myotome_Region;;SCTID:344535001;;TAO:0001056;;VHOG:0001244;;XAO:0000315;;ZFA:0001056
}}
}}

Latest revision as of 17:37, 12 September 2014

Name:myotome
Namespace:FANTOM
Definition:"A group of tissues formed from somites that develop into the body wall muscle[WP]. Somitic compartment that is a precursor of muscle. mesoderm that is derived from the somite that is fated to become the musculature[MP]. Portion of the somites giving rise to body wall muscle masses[ZFA]" [MP:0003939, PMID:17313522, Wikipedia:Myotome, ZFIN:curator]
Xrefs:
links:

AAO:0011067
BTO:0000742
EHDAA2:0003431
EHDAA:1721
EHDAA:1727
EHDAA:1733
EHDAA:1739
[ Gray65.png Gray65.png]
[ 200px-Gray65.png 200px-Gray65.png]
ncithesaurus:Myotome_Region
SCTID:344535001
TAO:0001056
VHOG:0001244
XAO:0000315

ZFA:0001056
Synonyms: "muscle plate" RELATED []
"myomere" RELATED []
"myotome region" RELATED []
"myotomes" RELATED []
"myotomus" RELATED LATIN [Wikipedia:Myotome]
Comments:Editors note: The term "myotome" is also used to describe the muscles served by a single nerve root / spinal segment - consider adding new class.
Alt_id: UBERON:XAO_0000315-ZFA_0001056
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0017650(developing mesenchymal structure)
develops_from:UBERON:0002329(somite),UBERON:0004290(dermomyotome)
part_of:UBERON:0000926(mesoderm)



Children

develops from:UBERON:0001134 (skeletal muscle tissue),UBERON:0014892 (skeletal muscle organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003082 (myotome), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_5ac7572c11ad44c61528e3c572da8069p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_5ac7572c11ad44c61528e3c572da8069p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_83276f31878937af0080c58edf614dd1p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_83276f31878937af0080c58edf614dd1p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_83276f31878937af0080c58edf614dd1p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_83276f31878937af0080c58edf614dd1p@chrX:65748600..65748616, +
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_76c54a07e70b9bb07f6f91e9a468a57cp@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_76c54a07e70b9bb07f6f91e9a468a57cp@chrX:160838787..160838800, +
3.13e-47FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_a2b09cb7be43c3153d7d1cec91bf321dp@chr6:53359400..53359406, +
3.13e-47FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_a2b09cb7be43c3153d7d1cec91bf321dp@chr6:53359400..53359406, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_6f13d30de0b64929e29f0e60df4b9ed5p@chr11:81849982..81850000, +
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_6f13d30de0b64929e29f0e60df4b9ed5p@chr11:81849982..81850000, +
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_dae9e184c2f3f4a0d93279af2a48a0b1p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_dae9e184c2f3f4a0d93279af2a48a0b1p@chr17:14813242..14813246, -
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_0e711495a509634abe85b352a79f919dp4@Gpr39
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_0e711495a509634abe85b352a79f919dp4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840048..160840057, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_b3f87f6b6e631bb1f203a86f5ac60adap@chrX:160840048..160840057, +
4.61e-38FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_d46de67acb716ea8a1852a3cbe189d3fp2@LRRC17
4.61e-38FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_d46de67acb716ea8a1852a3cbe189d3fp2@LRRC17
6.16e-37FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_b8c7bc4f6decd68ee8a92a1d86cc40abp8@ARHGAP22
6.16e-37FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_b8c7bc4f6decd68ee8a92a1d86cc40abp8@ARHGAP22
7.01e-37FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_2bf6174c36957193330fd8d695001380p@chr9:35685631..35685657, +
7.01e-37FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_2bf6174c36957193330fd8d695001380p@chr9:35685631..35685657, +
9.63e-36FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_a8ef848b6bdefa1115d9315a44989d3ep4@ARHGAP22
9.63e-36FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_a8ef848b6bdefa1115d9315a44989d3ep4@ARHGAP22
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_b9998957088f1195fcda5a6c0f3c64d4p11@Fam198b
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_b9998957088f1195fcda5a6c0f3c64d4p11@Fam198b
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_1b62081ce288e890329a35962808d490p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_1b62081ce288e890329a35962808d490p@chr1:127574253..127574264, +
4.0e-35FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_61f4665f10b3df9f0dd06ddc6b4a6c0ap1@LRRC17
4.0e-35FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_61f4665f10b3df9f0dd06ddc6b4a6c0ap1@LRRC17
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_c366c7a15a1841dd72aaa1e520bd0f4bp7@Gpr39
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_c366c7a15a1841dd72aaa1e520bd0f4bp7@Gpr39
5.48e-35FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_0324235d0b34af946467945dd709ae16p@chr11:102661517..102661541, -
5.48e-35FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_0324235d0b34af946467945dd709ae16p@chr11:102661517..102661541, -
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_1e02528f31265f61a7262208083abf1dp11@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_1e02528f31265f61a7262208083abf1dp11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_1309b4e144c3eaee438e56ce4f88c044p@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_1309b4e144c3eaee438e56ce4f88c044p@chrX:160839768..160839780, +
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_1e5efe0a05dcddc5a37fc93146e5a713p8@Gpr39
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_1e5efe0a05dcddc5a37fc93146e5a713p8@Gpr39
1.83e-34FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_a448df1c429e1aa6f038c2222e8cd5b0p@chr4:74703497..74703511, +
1.83e-34FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_a448df1c429e1aa6f038c2222e8cd5b0p@chr4:74703497..74703511, +
5.92e-34FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_4c07fd1f53045ae8781a2869ad514d0ep@chr4:7846444..7846449, -
5.92e-34FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_4c07fd1f53045ae8781a2869ad514d0ep@chr4:7846444..7846449, -
2.08e-33FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_2103fb890bd8019005f8024ac6d28ad1p3@LRRC17
2.08e-33FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_2103fb890bd8019005f8024ac6d28ad1p3@LRRC17
1.42e-32FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_0d22e733b7dfb1032cde250e327b04dep2@CXCL6
1.42e-32FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_0d22e733b7dfb1032cde250e327b04dep2@CXCL6
1.85e-32FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_94e92dafb57850f35e67023c0bf4beb6p@chr9:35689148..35689192, +
1.85e-32FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_94e92dafb57850f35e67023c0bf4beb6p@chr9:35689148..35689192, +
2.15e-32FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_6f0cabb5a7741cdfcf9ff59a9774f281p2@SASH1
2.15e-32FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_6f0cabb5a7741cdfcf9ff59a9774f281p2@SASH1
2.89e-32FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_83717d6cc1ba527c7b2e563d9fdedde9p@chr4:169059590..169059615, +
2.89e-32FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_83717d6cc1ba527c7b2e563d9fdedde9p@chr4:169059590..169059615, +
3.77e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_fba4dc20f1bc7d43267e3b43dfbe4f29p@chr2:134548872..134548879, -
3.77e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_fba4dc20f1bc7d43267e3b43dfbe4f29p@chr2:134548872..134548879, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_d30a7668e210d36e2ef2bf03dbd8f392p@chr7:96658543..96658553, -
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_d30a7668e210d36e2ef2bf03dbd8f392p@chr7:96658543..96658553, -
4.14e-32FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_236842f16af25a40054725ab01830a01p3@IFI27L2
4.14e-32FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_236842f16af25a40054725ab01830a01p3@IFI27L2
4.65e-32FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_93811635469677730388e03e9537fcf0p@chr9:35684475..35684520, +
4.65e-32FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_93811635469677730388e03e9537fcf0p@chr9:35684475..35684520, +
8.06e-32FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_e0133101a2c7bc91c487f490abe7a5a5p1@CU675118
8.06e-32FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_e0133101a2c7bc91c487f490abe7a5a5p1@CU675118
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_b3cf9bce2d2235ca5ff8943ea021f585p2@Il6
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_b3cf9bce2d2235ca5ff8943ea021f585p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_b3cf9bce2d2235ca5ff8943ea021f585p2@Il6
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_b3cf9bce2d2235ca5ff8943ea021f585p@chr7:91081998..91082010, -
1.52e-31FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_cf4489f917d25ee42c9e5760a0672d2fp@chr9:35685445..35685517, +
1.52e-31FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_cf4489f917d25ee42c9e5760a0672d2fp@chr9:35685445..35685517, +
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_24aad1e301da76ca90ad94ecc0548e48p@chr10:67598037..67598049, -
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_24aad1e301da76ca90ad94ecc0548e48p@chr10:67598037..67598049, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_04176113e3ece751382188375a9c2707p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_04176113e3ece751382188375a9c2707p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_29c2fac7dec525cc7f4e5b5e9c114afep@chr18:52678391..52678395, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_29c2fac7dec525cc7f4e5b5e9c114afep@chr18:52678391..52678395, -
3.27e-31FFCP PHASE1:Hg19::chr9:118916063..118916077,+#_3703ae85a6f35a5d580ee5b0407c9d24p2@PAPPA
3.27e-31FFCP PHASE2:Hg19::chr9:118916063..118916077,+#_3703ae85a6f35a5d580ee5b0407c9d24p2@PAPPA
4.08e-31FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_c2fb5e73d3b72f4c068f41e7c2f04494p3@CXCL6
4.08e-31FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_c2fb5e73d3b72f4c068f41e7c2f04494p3@CXCL6
6.01e-31FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_2d0c04978c1b222151ac8b4d36de9b25p2@RCN3
6.01e-31FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_2d0c04978c1b222151ac8b4d36de9b25p2@RCN3
7.63e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_5054f358c7661f55ff1cd8cb1b039e0bp2@ELTD1
7.63e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_5054f358c7661f55ff1cd8cb1b039e0bp2@ELTD1
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_30af228404904f821ea12e21e8e6d48fp@chr6:91222095..91222107, +
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_30af228404904f821ea12e21e8e6d48fp@chr6:91222095..91222107, +
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_d1ceb95cff5757fcdf7b18707c07374bp9@Kctd10
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_d1ceb95cff5757fcdf7b18707c07374bp9@Kctd10
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_de4b1d0d56b6d235daf3945b815297e3p6@Gpr39
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_de4b1d0d56b6d235daf3945b815297e3p6@Gpr39
1.35e-30FFCP PHASE1:Hg19::chr4:74703963..74703975,+#_f9ebd1d108bf7585e4544a645083ac13p@chr4:74703963..74703975, +
1.35e-30FFCP PHASE2:Hg19::chr4:74703963..74703975,+#_f9ebd1d108bf7585e4544a645083ac13p@chr4:74703963..74703975, +
4.78e-30FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_2c2bb2b4419217d7acdc102e6ff74137p1@BDKRB1
4.78e-30FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_2c2bb2b4419217d7acdc102e6ff74137p1@BDKRB1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003082&oldid=3277514"