FFCP PHASE1:Hg19::chrX:30671504..30671547,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2710 | |EntrezGene=2710 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4289 | |HGNC=4289 | ||
|TSSclassifier=strong | |||
|UniProt=A6NJP5,F8W7S9,B4DH54,P32189 | |UniProt=A6NJP5,F8W7S9,B4DH54,P32189 | ||
|association_with_transcript=28bp_to_ENST00000378943,ENST00000378946,ENST00000534212,NM_000167,NM_001128127,NM_001205019,NM_203391,uc004dch.3,uc004dci.3,uc010ngj.2,uc010ngk.2,uc011mjz.1,uc011mka.1_5end | |association_with_transcript=28bp_to_ENST00000378943,ENST00000378946,ENST00000534212,NM_000167,NM_001128127,NM_001205019,NM_203391,uc004dch.3,uc004dci.3,uc010ngj.2,uc010ngk.2,uc011mjz.1,uc011mka.1_5end | ||
|cluster_id=chrX:30671504..30671547,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_1_at_GK_5end | |description=CAGE_peak_1_at_GK_5end | ||
|id=chrX:30671504..30671547,+ | |id=chrX:30671504..30671547,+ | ||
|ontology_enrichment_celltype=CL:0000763!2.33e-31!112;CL:0000049!2.33e-31!112;CL:0000037!6.75e-29!172;CL:0000566!6.75e-29!172;CL:0000766!1.07e-27!76;CL:0002032!1.92e-27!165;CL:0000837!1.92e-27!165;CL:0000557!1.27e-25!71;CL:0000988!1.58e-25!182;CL:0000839!1.34e-24!70;CL:0002057!2.01e-24!42;CL:0000738!3.89e-24!140;CL:0002009!2.96e-23!65;CL:0000860!7.44e-23!45;CL:0002194!2.89e-22!63;CL:0000576!2.89e-22!63;CL:0000040!2.89e-22!63;CL:0000559!2.89e-22!63;CL:0002031!4.15e-20!124;CL:0002087!3.51e-18!119;CL:0000219!3.27e-08!390;CL:0000134!2.02e-07!358;CL:0002320!7.90e-07!365 | |ontology_enrichment_celltype=CL:0000763!2.33e-31!112;CL:0000049!2.33e-31!112;CL:0000037!6.75e-29!172;CL:0000566!6.75e-29!172;CL:0000766!1.07e-27!76;CL:0002032!1.92e-27!165;CL:0000837!1.92e-27!165;CL:0000557!1.27e-25!71;CL:0000988!1.58e-25!182;CL:0000839!1.34e-24!70;CL:0002057!2.01e-24!42;CL:0000738!3.89e-24!140;CL:0002009!2.96e-23!65;CL:0000860!7.44e-23!45;CL:0002194!2.89e-22!63;CL:0000576!2.89e-22!63;CL:0000040!2.89e-22!63;CL:0000559!2.89e-22!63;CL:0002031!4.15e-20!124;CL:0002087!3.51e-18!119;CL:0000219!3.27e-08!390;CL:0000134!2.02e-07!358;CL:0002320!7.90e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000860;8.64e-22;33!CL:0002057;8.64e-22;33!CL:0000473;1.63e-19;39!CL:0000234;1.63e-19;39!CL:0000576;1.72e-17;48!CL:0000766;1.32e-14;69!CL:0000763;7.48e-11;100!CL:0002087;6.08e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.50e-33,108;CL:0000049,1.50e-33,108;CL:0000766,1.59e-30,72;CL:0000037,2.37e-29,168;CL:0000557,2.44e-28,67;CL:0002032,7.68e-28,161;CL:0000837,7.68e-28,161;CL:0000839,3.20e-27,66;CL:0000473,6.20e-27,48;CL:0000234,6.20e-27,48;CL:0000988,8.79e-27,177;CL:0002009,7.62e-26,61;CL:0000860,1.44e-25,42;CL:0002057,1.44e-25,42;CL:0002194,8.67e-25,59;CL:0000576,8.67e-25,59;CL:0000040,8.67e-25,59;CL:0000559,8.67e-25,59;CL:0000738,9.71e-25,136;CL:0002031,1.56e-20,120;CL:0002087,1.62e-18,115;CL:0000219,4.40e-08,386;CL:0000134,1.40e-07,354;CL:0002320,6.18e-07,361;CL:0000034,8.24e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;5.14e-19;42!CL:0000049;4.11e-10;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.32e-28!102;UBERON:0003061!6.32e-28!102;UBERON:0002193!1.19e-26!112;UBERON:0002371!3.94e-22!80;UBERON:0001474!2.43e-21!86;UBERON:0002405!4.06e-21!115;UBERON:0004765!6.86e-17!101;UBERON:0001434!6.86e-17!101;UBERON:0002204!1.70e-08!167;UBERON:0000178!8.91e-07!15;UBERON:0000179!8.91e-07!15;UBERON:0000463!8.91e-07!15 | |ontology_enrichment_uberon=UBERON:0002390!6.32e-28!102;UBERON:0003061!6.32e-28!102;UBERON:0002193!1.19e-26!112;UBERON:0002371!3.94e-22!80;UBERON:0001474!2.43e-21!86;UBERON:0002405!4.06e-21!115;UBERON:0004765!6.86e-17!101;UBERON:0001434!6.86e-17!101;UBERON:0002204!1.70e-08!167;UBERON:0000178!8.91e-07!15;UBERON:0000179!8.91e-07!15;UBERON:0000463!8.91e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;7.93e-07;15!UBERON:0000179;7.93e-07;15!UBERON:0000463;7.93e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.55e-30,98;UBERON:0003061,1.55e-30,98;UBERON:0002193,2.82e-29,108;UBERON:0002371,1.75e-24,76;UBERON:0002405,2.97e-23,93;UBERON:0001474,5.00e-23,82;UBERON:0004765,4.18e-19,90;UBERON:0001434,1.99e-17,100;UBERON:0002204,5.68e-09,167;UBERON:0003081,4.17e-07,203;UBERON:0000178,4.88e-07,15;UBERON:0000179,4.88e-07,15;UBERON:0000463,4.88e-07,15 | |||
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| ||
|short_description=p1@GK | |short_description=p1@GK | ||
}} | }} |
Latest revision as of 20:43, 24 September 2015
Short description: | p1@GK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GK_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 28bp_to_ENST00000378943, ENST00000378946, ENST00000534212, NM_000167, NM_001128127, NM_001205019, NM_203391, uc004dch.3, uc004dci.3, uc010ngj.2, uc010ngk.2, uc011mjz.1, uc011mka.1_5end |
EntrezGene: | GK |
HGNC: | 4289 |
UniProt: | A6NJP5F8W7S9B4DH54P32189 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 1.50e-33 | 108 |
common myeloid progenitor | 1.50e-33 | 108 |
myeloid leukocyte | 1.59e-30 | 72 |
hematopoietic stem cell | 2.37e-29 | 168 |
granulocyte monocyte progenitor cell | 2.44e-28 | 67 |
hematopoietic oligopotent progenitor cell | 7.68e-28 | 161 |
hematopoietic multipotent progenitor cell | 7.68e-28 | 161 |
myeloid lineage restricted progenitor cell | 3.20e-27 | 66 |
defensive cell | 6.20e-27 | 48 |
phagocyte | 6.20e-27 | 48 |
hematopoietic cell | 8.79e-27 | 177 |
macrophage dendritic cell progenitor | 7.62e-26 | 61 |
classical monocyte | 1.44e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.44e-25 | 42 |
monopoietic cell | 8.67e-25 | 59 |
monocyte | 8.67e-25 | 59 |
monoblast | 8.67e-25 | 59 |
promonocyte | 8.67e-25 | 59 |
leukocyte | 9.71e-25 | 136 |
hematopoietic lineage restricted progenitor cell | 1.56e-20 | 120 |
nongranular leukocyte | 1.62e-18 | 115 |
motile cell | 4.40e-08 | 386 |
mesenchymal cell | 1.40e-07 | 354 |
connective tissue cell | 6.18e-07 | 361 |
stem cell | 8.24e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.55e-30 | 98 |
blood island | 1.55e-30 | 98 |
hemolymphoid system | 2.82e-29 | 108 |
bone marrow | 1.75e-24 | 76 |
immune system | 2.97e-23 | 93 |
bone element | 5.00e-23 | 82 |
skeletal element | 4.18e-19 | 90 |
skeletal system | 1.99e-17 | 100 |
musculoskeletal system | 5.68e-09 | 167 |
lateral plate mesoderm | 4.17e-07 | 203 |
blood | 4.88e-07 | 15 |
haemolymphatic fluid | 4.88e-07 | 15 |
organism substance | 4.88e-07 | 15 |