FFCP PHASE1:Hg19::chr4:141188914..141188930,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:141188914..141188930,+ | |||
|description=CAGE_peak_at_chr4:141188914..141188930,+ | |description=CAGE_peak_at_chr4:141188914..141188930,+ | ||
|id=chr4:141188914..141188930,+ | |id=chr4:141188914..141188930,+ | ||
|ontology_enrichment_celltype=CL:1000507!3.60e-10!12;CL:1000494!3.60e-10!12;CL:0000349!5.79e-10!3;CL:0002577!5.79e-10!3;CL:0000075!7.83e-10!27;CL:0002541!3.58e-09!3;CL:0000650!8.40e-09!3;CL:1000618!8.40e-09!3;CL:1001318!8.40e-09!3;CL:0002173!8.40e-09!3;CL:1000500!8.40e-09!3;CL:0002618!1.13e-08!3;CL:0000066!4.97e-08!254;CL:0002543!1.46e-07!6;CL:0000197!2.04e-07!6;CL:0000098!2.04e-07!6;CL:0002167!2.04e-07!6;CL:1000449!2.29e-07!16;CL:0002536!2.31e-07!2;CL:0000710!2.70e-07!20;CL:0002681!5.41e-07!13;CL:0002584!5.41e-07!13 | |ontology_enrichment_celltype=CL:1000507!3.60e-10!12;CL:1000494!3.60e-10!12;CL:0000349!5.79e-10!3;CL:0002577!5.79e-10!3;CL:0000075!7.83e-10!27;CL:0002541!3.58e-09!3;CL:0000650!8.40e-09!3;CL:1000618!8.40e-09!3;CL:1001318!8.40e-09!3;CL:0002173!8.40e-09!3;CL:1000500!8.40e-09!3;CL:0002618!1.13e-08!3;CL:0000066!4.97e-08!254;CL:0002543!1.46e-07!6;CL:0000197!2.04e-07!6;CL:0000098!2.04e-07!6;CL:0002167!2.04e-07!6;CL:1000449!2.29e-07!16;CL:0002536!2.31e-07!2;CL:0000710!2.70e-07!20;CL:0002681!5.41e-07!13;CL:0002584!5.41e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002577;8.41e-26;3!CL:0000349;3.54e-21;19!CL:0002536;2.44e-18;2!CL:0002379;5.31e-10;1!CL:0002550;9.29e-10;1!CL:0000319;9.29e-10;1!CL:0002537;9.28e-08;5 | |ontology_enrichment_celltype_v019=CL:0002577;8.41e-26;3!CL:0000349;3.54e-21;19!CL:0002536;2.44e-18;2!CL:0002379;5.31e-10;1!CL:0002550;9.29e-10;1!CL:0000319;9.29e-10;1!CL:0002537;9.28e-08;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002577,7.41e-26,3;CL:0000349,3.44e-21,19;CL:0002536,2.44e-18,2;CL:0002379,5.31e-10,1;CL:0002550,8.17e-10,1;CL:0000319,8.91e-10,1;CL:0002537,9.44e-08,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4556;2.77e-12;3!DOID:3620;5.31e-10;1!DOID:3565;5.31e-10;1!DOID:3030;9.29e-10;1!DOID:0060085;1.83e-09;1!DOID:3165;1.83e-09;1!DOID:0060121;1.83e-09;1!DOID:2438;1.83e-09;1!DOID:4418;1.83e-09;1!DOID:3905;5.08e-09;9!DOID:3908;1.03e-07;5 | |ontology_enrichment_disease_v019=DOID:4556;2.77e-12;3!DOID:3620;5.31e-10;1!DOID:3565;5.31e-10;1!DOID:3030;9.29e-10;1!DOID:0060085;1.83e-09;1!DOID:3165;1.83e-09;1!DOID:0060121;1.83e-09;1!DOID:2438;1.83e-09;1!DOID:4418;1.83e-09;1!DOID:3905;5.08e-09;9!DOID:3908;1.03e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:4556,3.37e-12,3;DOID:3620,5.31e-10,1;DOID:3565,5.31e-10,1;DOID:3030,8.91e-10,1;DOID:0060085,1.91e-09,1;DOID:3165,1.91e-09,1;DOID:0060121,1.91e-09,1;DOID:2438,1.91e-09,1;DOID:4418,1.91e-09,1;DOID:3905,5.23e-09,9;DOID:3908,1.15e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.34e-28!14;UBERON:0000158!2.34e-28!14;UBERON:0003124!8.55e-20!7;UBERON:0000478!6.41e-18!24;UBERON:0001987!2.43e-12!4;UBERON:0004340!2.43e-12!4;UBERON:0000305!6.10e-11!7;UBERON:0009773!3.60e-10!12;UBERON:0001231!3.60e-10!12;UBERON:0004810!3.60e-10!12;UBERON:0004871!1.64e-09!8;UBERON:0000476!3.58e-09!3;UBERON:0000920!3.58e-09!3;UBERON:0003567!8.40e-09!3;UBERON:0003838!8.40e-09!3;UBERON:0005169!8.40e-09!3;UBERON:0002321!8.40e-09!3;UBERON:0005215!8.40e-09!3;UBERON:0002303!8.40e-09!3;UBERON:0002319!8.40e-09!3;UBERON:0002066!1.48e-08!5;UBERON:0002113!5.71e-08!27;UBERON:0003918!5.71e-08!27;UBERON:0005095!5.71e-08!27;UBERON:0007687!5.71e-08!27;UBERON:0000489!7.79e-08!32;UBERON:0004211!2.29e-07!16;UBERON:0001285!2.29e-07!16;UBERON:0007684!2.29e-07!16;UBERON:0003220!2.29e-07!16;UBERON:0004208!2.29e-07!16;UBERON:0001638!2.93e-07!9;UBERON:0003920!2.93e-07!9;UBERON:0004582!2.93e-07!9;UBERON:0001225!5.41e-07!13;UBERON:0008987!5.41e-07!13;UBERON:0006555!7.15e-07!17;UBERON:0005103!7.15e-07!17;UBERON:0000083!7.15e-07!17;UBERON:0009201!7.15e-07!17;UBERON:0004819!7.15e-07!17;UBERON:0006553!7.15e-07!17;UBERON:0003074!7.15e-07!17;UBERON:0003060!7.15e-07!17 | |ontology_enrichment_uberon=UBERON:0005631!2.34e-28!14;UBERON:0000158!2.34e-28!14;UBERON:0003124!8.55e-20!7;UBERON:0000478!6.41e-18!24;UBERON:0001987!2.43e-12!4;UBERON:0004340!2.43e-12!4;UBERON:0000305!6.10e-11!7;UBERON:0009773!3.60e-10!12;UBERON:0001231!3.60e-10!12;UBERON:0004810!3.60e-10!12;UBERON:0004871!1.64e-09!8;UBERON:0000476!3.58e-09!3;UBERON:0000920!3.58e-09!3;UBERON:0003567!8.40e-09!3;UBERON:0003838!8.40e-09!3;UBERON:0005169!8.40e-09!3;UBERON:0002321!8.40e-09!3;UBERON:0005215!8.40e-09!3;UBERON:0002303!8.40e-09!3;UBERON:0002319!8.40e-09!3;UBERON:0002066!1.48e-08!5;UBERON:0002113!5.71e-08!27;UBERON:0003918!5.71e-08!27;UBERON:0005095!5.71e-08!27;UBERON:0007687!5.71e-08!27;UBERON:0000489!7.79e-08!32;UBERON:0004211!2.29e-07!16;UBERON:0001285!2.29e-07!16;UBERON:0007684!2.29e-07!16;UBERON:0003220!2.29e-07!16;UBERON:0004208!2.29e-07!16;UBERON:0001638!2.93e-07!9;UBERON:0003920!2.93e-07!9;UBERON:0004582!2.93e-07!9;UBERON:0001225!5.41e-07!13;UBERON:0008987!5.41e-07!13;UBERON:0006555!7.15e-07!17;UBERON:0005103!7.15e-07!17;UBERON:0000083!7.15e-07!17;UBERON:0009201!7.15e-07!17;UBERON:0004819!7.15e-07!17;UBERON:0006553!7.15e-07!17;UBERON:0003074!7.15e-07!17;UBERON:0003060!7.15e-07!17 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;6.92e-20;7!UBERON:0001987;1.62e-19;4!UBERON:0000478;1.30e-16;24!UBERON:0005631;5.48e-14;10!UBERON:0000158;5.48e-14;10 | |ontology_enrichment_uberon_v019=UBERON:0000305;6.92e-20;7!UBERON:0001987;1.62e-19;4!UBERON:0000478;1.30e-16;24!UBERON:0005631;5.48e-14;10!UBERON:0000158;5.48e-14;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.29e-29,14;UBERON:0000158,5.29e-29,14;UBERON:0000305,7.10e-20,7;UBERON:0001987,1.47e-19,4;UBERON:0004340,1.47e-19,4;UBERON:0004871,2.02e-17,8;UBERON:0000478,1.27e-16,24;UBERON:0003124,2.01e-11,7 | |||
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| ||
|short_description=p@chr4:141188914..141188930,+ | |short_description=p@chr4:141188914..141188930,+ | ||
}} | }} |
Latest revision as of 01:49, 30 July 2015
Short description: | p@chr4:141188914..141188930, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:141188914..141188930, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 7.41e-26 | 3 |
extraembryonic cell | 3.44e-21 | 19 |
amniotic epithelial cell | 2.44e-18 | 2 |
meningothelial cell | 5.31e-10 | 1 |
fibroblast of the conjuctiva | 8.17e-10 | 1 |
mucus secreting cell | 8.91e-10 | 1 |
amnion mesenchymal stem cell | 9.44e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.29e-29 | 14 |
membranous layer | 5.29e-29 | 14 |
amnion | 7.10e-20 | 7 |
placenta | 1.47e-19 | 4 |
allantois | 1.47e-19 | 4 |
somatic layer of lateral plate mesoderm | 2.02e-17 | 8 |
extraembryonic structure | 1.27e-16 | 24 |
chorion | 2.01e-11 | 7 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 3.37e-12 | 3 |
central nervous system cancer | 5.31e-10 | 1 |
meningioma | 5.31e-10 | 1 |
mucinous adenocarcinoma | 8.91e-10 | 1 |
organ system benign neoplasm | 1.91e-09 | 1 |
skin benign neoplasm | 1.91e-09 | 1 |
integumentary system benign neoplasm | 1.91e-09 | 1 |
dermis tumor | 1.91e-09 | 1 |
cutaneous fibrous histiocytoma | 1.91e-09 | 1 |
lung carcinoma | 5.23e-09 | 9 |
non-small cell lung carcinoma | 1.15e-07 | 5 |