FFCP PHASE1:Hg19::chr1:32739715..32739730,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:32739715..32739730,+
|short_description=p3@LCK
|description=CAGE_peak_3_at_LCK_5end
|association_with_transcript=0bp_to_ENST00000373557,ENST00000373562,ENS...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3932 | |EntrezGene=3932 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6524 | |HGNC=6524 | ||
|TSSclassifier=strong | |||
|UniProt=E9PAP0,F8W6B9,E9PI33 | |UniProt=E9PAP0,F8W6B9,E9PI33 | ||
|association_with_transcript=0bp_to_ENST00000373557,ENST00000373562,ENST00000477031_5end | |||
|cluster_id=chr1:32739715..32739730,+ | |||
|coexpression_cluster_id=C580 | |||
|description=CAGE_peak_3_at_LCK_5end | |||
|id=chr1:32739715..32739730,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.44e-16!25;CL:0000827!1.44e-16!25;CL:0000791!1.66e-15!18;CL:0000789!1.66e-15!18;CL:0002420!1.66e-15!18;CL:0002419!1.66e-15!18;CL:0000790!1.66e-15!18;CL:0000542!2.75e-13!53;CL:0000051!2.75e-13!53;CL:0000838!1.04e-12!52;CL:0000625!3.27e-11!11;CL:0002322!9.13e-08!5;CL:0000624!3.90e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.27e-20;25!CL:0000791;9.21e-19;18!CL:0000789;9.21e-19;18!CL:0002419;9.21e-19;18!CL:0000625;7.90e-16;11!CL:0002322;1.39e-12;5!CL:0000542;4.54e-09;53!CL:1000507;6.49e-07;10!CL:1000494;6.49e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.27e-20,25;CL:0000827,2.27e-20,25;CL:0000791,9.16e-19,18;CL:0000789,9.16e-19,18;CL:0002420,9.16e-19,18;CL:0002419,9.16e-19,18;CL:0000790,9.16e-19,18;CL:0000625,7.97e-16,11;CL:0000838,2.11e-14,52;CL:0000542,5.08e-14,53;CL:0000051,5.08e-14,53;CL:0002322,1.41e-12,5;CL:1000507,5.86e-07,10;CL:1000494,5.86e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000790;9.21e-19;18!CL:0000051;4.54e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!6.15e-08!15;UBERON:0000179!6.15e-08!15;UBERON:0000463!6.15e-08!15;UBERON:0006555!2.57e-07!17;UBERON:0005103!2.57e-07!17;UBERON:0000083!2.57e-07!17;UBERON:0009201!2.57e-07!17;UBERON:0004819!2.57e-07!17;UBERON:0006553!2.57e-07!17;UBERON:0003074!2.57e-07!17;UBERON:0003060!2.57e-07!17;UBERON:0000974!8.77e-07!10;UBERON:0000080!9.59e-07!18;UBERON:0002120!9.59e-07!18;UBERON:0004875!9.59e-07!18;UBERON:0005721!9.59e-07!18;UBERON:0005754!9.59e-07!18;UBERON:0007297!9.59e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.04e-10;15!UBERON:0000179;9.04e-10;15!UBERON:0000463;9.04e-10;15!UBERON:0004211;6.49e-07;10!UBERON:0009773;6.49e-07;10!UBERON:0001231;6.49e-07;10!UBERON:0004810;6.49e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.22e-09,15;UBERON:0000179,1.22e-09,15;UBERON:0000463,1.22e-09,15;UBERON:0004810,5.86e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,9.07141518364156,1.31064823278103,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.154816123316076,0,0.30120591877825,0,21.3034801595829,3.41206157969812,0.880801318004542,0.553995408531877,0.200544447470142,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0.263384084775077,1.180258620683,0.393010762749165,1.64481199199607,0.668745981562712,11.0813570655421,4.2610302516126,3.89653456815823,0.111410456885174,0.294605907474837,1.10766947291811,1.35401931882508,0.384273959177026,0.390178042679635,0.986627427622057,0.552700035571697,1.44901542867526,16.9046682004749,14.9822863730239,14.6349733326968,0.453237370790265,3.83220493601921,1.71813722741315,1.77113784413652,4.14135038621326,4.55758417699493,5.70271226669025,5.42070428679982,5.24745105733115,2.49861453104692,2.8413270245282,4.10563998460523,0.80642697289893,0,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,12.0753969068299,10.4698516973973,12.6651397727775,5.07939169575315,13.8776467981596,11.3142981313507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,90.4999353800034,0,0,0,1.1240175325762,0,1.75918045801206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,1.03384013061444,1.50999940573032,1.28073069364133,0.303127571446259,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,1.80479845162965,1.38627606787947,1.56869953835371,2.92278449306521,0.316654886678627,0,0,0.215915916102139,0,0.270946437543853,1.00337954770971,0.254876273045038,0,1.34324852833307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,1.34060455107157,0,0,0,0,0.443430153536676,0.918893600827838,1.01489521846434,1.52927441428475,0.569647187174163,2.1440859791201,2.87953591160336,0.648473311192717,1.62009431171434,0,0,0,0,0.371606350251437,3.75099953738757,56.5577654619892,96.1340424554799,0,0,0,0,0,0,0,7.51903431270201,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0.111443384277478,0,0,0.593929361665277,0,0,0,0,0,0,0,1.38141957765574,0,1.53403023753232,0,0,2.15684042753584,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,2.79679015322043,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.697756780756,0,0,0,0,0,0,0,0,0.326465616318295,0.141353071433941,0,0,0,1.22206028986725,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,1.13843818411917,0,0,0.195984794828755,0.34823682632161,0.52418000472609,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,17.1467596413386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0.659326867049332,0.471824806979294,0,0,0,0,31.3468639506787,32.0466887271555,40.7131531268601,0,0,0,0,0.157611414598396,1.78345599658994,0.105600336519406,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,1.32506888912221,0,0,0,0,0,0,0,0.992332043623902,0,5.35887432875942,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,3.76794674388145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12926711503384,0,0,0,0,0,0,0,0,0,0,0,1.66851121451744,0.235939446695481,0.183428598521679,0,0,0,0,0,0.20170506870352,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0.115233987555779,0,0,0,0,0.556157009460346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335566295393377,1.66855397145913,0,0,0,0,0,7.25212336732527,1.79055697645231,0,0.22589216407792,0,6.34043942980029,0,0.437119121007915,16.9314226690148,0,0,0,0,0,0,0,1.03132620757723,0,0,0,0.240724100067505,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,1.38783067318587,0.327796715891087,0,12.0346819095538,8.28373956323238,8.45433075720573,0.250707539292375,0.227336094654718,0,0,0,0.213233981900981,2.85677317756488,109.930324540882,62.9437602959999,0,0,0,0,0,0.740872583160463,0.143444410785353,0.665320713092027,1.79087190944144,0,0,0,0,0,0,0,13.6866179641898,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,9.07141518364156,1.31064823278103,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767658796194425,0.154816123316076,0,0.30120591877825,0,21.3034801595829,3.41206157969812,0.880801318004542,0.553995408531877,0.200544447470142,0.434021741431704,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0.560508562981536,0.263384084775077,1.180258620683,0.393010762749165,1.64481199199607,0.668745981562712,11.0813570655421,4.2610302516126,3.89653456815823,0.111410456885174,0.294605907474837,1.10766947291811,1.35401931882508,0.384273959177026,0.390178042679635,0.986627427622057,0.552700035571697,1.44901542867526,16.9046682004749,14.9822863730239,14.6349733326968,0.453237370790265,3.83220493601921,1.71813722741315,1.77113784413652,4.14135038621326,4.55758417699493,5.70271226669025,5.42070428679982,5.24745105733115,2.49861453104692,2.8413270245282,4.10563998460523,0.80642697289893,0,3.33096128930438,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,12.0753969068299,10.4698516973973,12.6651397727775,5.07939169575315,13.8776467981596,11.3142981313507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,90.4999353800034,0,0,0,1.1240175325762,0,1.75918045801206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,1.03384013061444,1.50999940573032,1.28073069364133,0.303127571446259,0,1.5119514666484,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0,0,0,0,1.80479845162965,1.38627606787947,1.56869953835371,2.92278449306521,0.316654886678627,0,0,0.215915916102139,0,0.270946437543853,1.00337954770971,0.254876273045038,0,1.34324852833307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,1.34060455107157,0,0,0,0,0.443430153536676,0.918893600827838,1.01489521846434,1.52927441428475,0.569647187174163,2.1440859791201,2.87953591160336,0.648473311192717,1.62009431171434,0,0,0,0,0.371606350251437,3.75099953738757,56.5577654619892,96.1340424554799,0,0,0,0,0,0,0,7.51903431270201,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0.111443384277478,0,0,0.593929361665277,0,0,0,0,0,0,0,1.38141957765574,0,1.53403023753232,0,0,2.15684042753584,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,2.79679015322043,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,125.697756780756,0,0,0,0,0,0,0,0,0.326465616318295,0.141353071433941,0,0,0,1.22206028986725,0,0,0,0,0,0,2.55436704901932,0,0,0,0,0,0,0,0,0,0,0,0,1.13843818411917,0,0,0.195984794828755,0.34823682632161,0.52418000472609,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0,0,17.1467596413386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.157566364614447,0.659326867049332,0.471824806979294,0,0,0,0,31.3468639506787,32.0466887271555,40.7131531268601,0,0,0,0,0.157611414598396,1.78345599658994,0.105600336519406,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,1.32506888912221,0,0,0,0,0,0,0,0.992332043623902,0,5.35887432875942,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0.37494122388632,0,0,0,0,3.76794674388145,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12926711503384,0,0,0,0,0,0,0,0,0,0,0,1.66851121451744,0.235939446695481,0.183428598521679,0,0,0,0,0,0.20170506870352,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0.115233987555779,0,0,0,0,0.556157009460346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335566295393377,1.66855397145913,0,0,0,0,0,7.25212336732527,1.79055697645231,0,0.22589216407792,0,6.34043942980029,0,0.437119121007915,16.9314226690148,0,0,0,0,0,0,0,1.03132620757723,0,0,0,0.240724100067505,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,1.38783067318587,0.327796715891087,0,12.0346819095538,8.28373956323238,8.45433075720573,0.250707539292375,0.227336094654718,0,0,0,0.213233981900981,2.85677317756488,109.930324540882,62.9437602959999,0,0,0,0,0,0.740872583160463,0.143444410785353,0.665320713092027,1.79087190944144,0,0,0,0,0,0,0,13.6866179641898,0 | ||
|short_description=p3@LCK | |||
}} | }} |
Latest revision as of 14:58, 17 September 2015
Short description: | p3@LCK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LCK_5end |
Coexpression cluster: | C580_chronic_thymus_Hodgkin_acute_iPS_vein_Burkitt |
Association with transcript: | 0bp_to_ENST00000373557, ENST00000373562, ENST00000477031_5end |
EntrezGene: | LCK |
HGNC: | 6524 |
UniProt: | E9PAP0F8W6B9E9PI33 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.27e-20 | 25 |
pro-T cell | 2.27e-20 | 25 |
mature alpha-beta T cell | 9.16e-19 | 18 |
alpha-beta T cell | 9.16e-19 | 18 |
immature T cell | 9.16e-19 | 18 |
mature T cell | 9.16e-19 | 18 |
immature alpha-beta T cell | 9.16e-19 | 18 |
CD8-positive, alpha-beta T cell | 7.97e-16 | 11 |
lymphoid lineage restricted progenitor cell | 2.11e-14 | 52 |
lymphocyte | 5.08e-14 | 53 |
common lymphoid progenitor | 5.08e-14 | 53 |
embryonic stem cell | 1.41e-12 | 5 |
kidney tubule cell | 5.86e-07 | 10 |
nephron tubule epithelial cell | 5.86e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
blood | 1.22e-09 | 15 |
haemolymphatic fluid | 1.22e-09 | 15 |
organism substance | 1.22e-09 | 15 |
nephron tubule epithelium | 5.86e-07 | 10 |