FFCP PHASE1:Hg19::chr6:30850697..30850739,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=780 | |EntrezGene=780 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2730 | |HGNC=2730 | ||
|TSSclassifier=strong | |||
|UniProt=D6RBU7,E7ERI6,Q08345,E7EQ23,E7EXB0,E7ES06 | |UniProt=D6RBU7,E7ERI6,Q08345,E7EQ23,E7EXB0,E7ES06 | ||
|association_with_transcript=0bp_to_ENST00000412274,ENST00000437124,ENST00000454612,ENST00000507046,ENST00000507901,ENST00000509639,ENST00000515529_5end | |association_with_transcript=0bp_to_ENST00000412274,ENST00000437124,ENST00000454612,ENST00000507046,ENST00000507901,ENST00000509639,ENST00000515529_5end | ||
|cluster_id=chr6:30850697..30850739,+ | |||
|coexpression_cluster_id=C226 | |coexpression_cluster_id=C226 | ||
|description=CAGE_peak_2_at_DDR1_5end | |description=CAGE_peak_2_at_DDR1_5end | ||
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|ontology_enrichment_celltype=CL:0000066!1.71e-27!254;CL:0002076!2.31e-16!43;CL:0000223!4.14e-13!59;CL:0002251!1.96e-08!21;CL:0002368!4.47e-08!13;CL:0002159!2.78e-07!13 | |ontology_enrichment_celltype=CL:0000066!1.71e-27!254;CL:0002076!2.31e-16!43;CL:0000223!4.14e-13!59;CL:0002251!1.96e-08!21;CL:0002368!4.47e-08!13;CL:0002159!2.78e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.33e-15;42!CL:0002251;1.40e-10;20!CL:0002368;7.04e-10;13!CL:0002159;7.26e-08;14!CL:1000507;3.43e-07;10!CL:1000494;3.43e-07;10!CL:0002202;9.41e-07;9!CL:0002632;9.41e-07;9 | |ontology_enrichment_celltype_v019=CL:0002076;2.33e-15;42!CL:0002251;1.40e-10;20!CL:0002368;7.04e-10;13!CL:0002159;7.26e-08;14!CL:1000507;3.43e-07;10!CL:1000494;3.43e-07;10!CL:0002202;9.41e-07;9!CL:0002632;9.41e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.04e-31,253;CL:0002076,1.02e-19,42;CL:0000223,1.53e-15,58;CL:0002251,1.33e-10,20;CL:0002368,7.31e-10,13;CL:0002159,6.83e-08,14;CL:1000507,3.35e-07,10;CL:1000494,3.35e-07,10;CL:0002202,9.71e-07,9;CL:0002632,9.71e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;2.09e-08;58 | |ontology_enrichment_development_v019=CL:0000223;2.09e-08;58 | ||
|ontology_enrichment_disease=DOID:305!5.19e-22!106;DOID:0050687!3.73e-19!143;DOID:1749!3.99e-09!14;DOID:299!5.66e-08!25 | |ontology_enrichment_disease=DOID:305!5.19e-22!106;DOID:0050687!3.73e-19!143;DOID:1749!3.99e-09!14;DOID:299!5.66e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;6.84e-11;14!DOID:299;4.19e-08;25 | |ontology_enrichment_disease_v019=DOID:1749;6.84e-11;14!DOID:299;4.19e-08;25 | ||
|ontology_enrichment_disease_v019_2=DOID:305,2.12e-18,106;DOID:0050687,4.20e-14,143;DOID:1749,7.47e-11,14;DOID:299,4.18e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.13e-23!169;UBERON:0000925!1.13e-23!169;UBERON:0006595!1.13e-23!169;UBERON:0001007!9.32e-18!155;UBERON:0001555!9.32e-18!155;UBERON:0007026!9.32e-18!155;UBERON:0004921!2.26e-16!129;UBERON:0004185!2.26e-16!129;UBERON:0000064!2.24e-14!219;UBERON:0000077!4.93e-14!130;UBERON:0001004!5.97e-14!72;UBERON:0000464!6.16e-14!104;UBERON:0000481!5.18e-13!347;UBERON:0000062!1.91e-12!511;UBERON:0000466!7.00e-12!126;UBERON:0005177!1.78e-11!107;UBERON:0001041!1.87e-10!98;UBERON:0000065!3.20e-10!53;UBERON:0000475!3.32e-10!365;UBERON:0001008!9.06e-10!45;UBERON:0004121!1.16e-09!169;UBERON:0006554!1.59e-09!44;UBERON:0000924!2.00e-09!173;UBERON:0006601!2.00e-09!173;UBERON:0005911!2.11e-09!82;UBERON:0005153!2.70e-09!37;UBERON:0000922!4.93e-09!612;UBERON:0000063!1.98e-08!97;UBERON:0007023!1.99e-08!115;UBERON:0005181!2.38e-08!35;UBERON:0005178!2.88e-08!34;UBERON:0002224!2.88e-08!34;UBERON:0005157!3.30e-08!51;UBERON:0008947!5.08e-08!38;UBERON:0003258!5.08e-08!38;UBERON:0000161!8.38e-08!35;UBERON:0009569!1.56e-07!113;UBERON:0000468!1.68e-07!659;UBERON:0002050!2.04e-07!605;UBERON:0005423!2.04e-07!605;UBERON:0002553!3.14e-07!70;UBERON:0000923!3.22e-07!604;UBERON:0005291!3.22e-07!604;UBERON:0006598!3.22e-07!604;UBERON:0002532!3.22e-07!604;UBERON:0000153!3.71e-07!129;UBERON:0007811!3.71e-07!129;UBERON:0000072!3.78e-07!46;UBERON:0001048!4.70e-07!168;UBERON:0005409!5.99e-07!35;UBERON:0003104!6.12e-07!238;UBERON:0009142!6.12e-07!238;UBERON:0000467!6.96e-07!625;UBERON:0000033!9.45e-07!123;UBERON:0000480!9.84e-07!626;UBERON:0000489!9.85e-07!32 | |ontology_enrichment_uberon=UBERON:0004119!1.13e-23!169;UBERON:0000925!1.13e-23!169;UBERON:0006595!1.13e-23!169;UBERON:0001007!9.32e-18!155;UBERON:0001555!9.32e-18!155;UBERON:0007026!9.32e-18!155;UBERON:0004921!2.26e-16!129;UBERON:0004185!2.26e-16!129;UBERON:0000064!2.24e-14!219;UBERON:0000077!4.93e-14!130;UBERON:0001004!5.97e-14!72;UBERON:0000464!6.16e-14!104;UBERON:0000481!5.18e-13!347;UBERON:0000062!1.91e-12!511;UBERON:0000466!7.00e-12!126;UBERON:0005177!1.78e-11!107;UBERON:0001041!1.87e-10!98;UBERON:0000065!3.20e-10!53;UBERON:0000475!3.32e-10!365;UBERON:0001008!9.06e-10!45;UBERON:0004121!1.16e-09!169;UBERON:0006554!1.59e-09!44;UBERON:0000924!2.00e-09!173;UBERON:0006601!2.00e-09!173;UBERON:0005911!2.11e-09!82;UBERON:0005153!2.70e-09!37;UBERON:0000922!4.93e-09!612;UBERON:0000063!1.98e-08!97;UBERON:0007023!1.99e-08!115;UBERON:0005181!2.38e-08!35;UBERON:0005178!2.88e-08!34;UBERON:0002224!2.88e-08!34;UBERON:0005157!3.30e-08!51;UBERON:0008947!5.08e-08!38;UBERON:0003258!5.08e-08!38;UBERON:0000161!8.38e-08!35;UBERON:0009569!1.56e-07!113;UBERON:0000468!1.68e-07!659;UBERON:0002050!2.04e-07!605;UBERON:0005423!2.04e-07!605;UBERON:0002553!3.14e-07!70;UBERON:0000923!3.22e-07!604;UBERON:0005291!3.22e-07!604;UBERON:0006598!3.22e-07!604;UBERON:0002532!3.22e-07!604;UBERON:0000153!3.71e-07!129;UBERON:0007811!3.71e-07!129;UBERON:0000072!3.78e-07!46;UBERON:0001048!4.70e-07!168;UBERON:0005409!5.99e-07!35;UBERON:0003104!6.12e-07!238;UBERON:0009142!6.12e-07!238;UBERON:0000467!6.96e-07!625;UBERON:0000033!9.45e-07!123;UBERON:0000480!9.84e-07!626;UBERON:0000489!9.85e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.76e-10;30!UBERON:0001008;1.76e-10;30!UBERON:0004921;1.43e-09;33!UBERON:0000489;6.09e-08;29!UBERON:0001041;8.80e-08;14!UBERON:0005181;3.03e-07;35!UBERON:0004211;3.43e-07;10!UBERON:0009773;3.43e-07;10!UBERON:0001231;3.43e-07;10!UBERON:0004810;3.43e-07;10!UBERON:0005178;4.28e-07;34!UBERON:0002224;4.28e-07;34!UBERON:0002113;7.17e-07;24!UBERON:0011143;7.17e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0006554;1.76e-10;30!UBERON:0001008;1.76e-10;30!UBERON:0004921;1.43e-09;33!UBERON:0000489;6.09e-08;29!UBERON:0001041;8.80e-08;14!UBERON:0005181;3.03e-07;35!UBERON:0004211;3.43e-07;10!UBERON:0009773;3.43e-07;10!UBERON:0001231;3.43e-07;10!UBERON:0004810;3.43e-07;10!UBERON:0005178;4.28e-07;34!UBERON:0002224;4.28e-07;34!UBERON:0002113;7.17e-07;24!UBERON:0011143;7.17e-07;24 | ||
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| ||
|short_description=p2@DDR1 | |short_description=p2@DDR1 | ||
}} | }} |
Latest revision as of 19:06, 17 September 2015
Short description: | p2@DDR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DDR1_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 0bp_to_ENST00000412274, ENST00000437124, ENST00000454612, ENST00000507046, ENST00000507901, ENST00000509639, ENST00000515529_5end |
EntrezGene: | DDR1 |
HGNC: | 2730 |
UniProt: | D6RBU7E7ERI6Q08345E7EQ23E7EXB0E7ES06 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.04e-31 | 253 |
endo-epithelial cell | 1.02e-19 | 42 |
endodermal cell | 1.53e-15 | 58 |
epithelial cell of alimentary canal | 1.33e-10 | 20 |
respiratory epithelial cell | 7.31e-10 | 13 |
general ecto-epithelial cell | 6.83e-08 | 14 |
kidney tubule cell | 3.35e-07 | 10 |
nephron tubule epithelial cell | 3.35e-07 | 10 |
epithelial cell of tracheobronchial tree | 9.71e-07 | 9 |
epithelial cell of lower respiratory tract | 9.71e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.27e-20 | 160 |
endoderm | 2.27e-20 | 160 |
presumptive endoderm | 2.27e-20 | 160 |
digestive system | 9.65e-15 | 145 |
digestive tract | 9.65e-15 | 145 |
primitive gut | 9.65e-15 | 145 |
renal system | 9.81e-14 | 48 |
urinary system structure | 1.98e-13 | 47 |
subdivision of digestive tract | 2.31e-13 | 118 |
respiratory system | 7.75e-12 | 74 |
trunk region element | 1.02e-11 | 101 |
organ system subdivision | 1.41e-09 | 223 |
embryo | 4.61e-09 | 592 |
cavitated compound organ | 8.63e-09 | 31 |
endo-epithelium | 9.38e-09 | 82 |
foregut | 1.01e-08 | 87 |
subdivision of trunk | 1.50e-08 | 112 |
epithelial bud | 2.18e-08 | 37 |
thoracic segment organ | 3.63e-08 | 35 |
thoracic cavity element | 4.74e-08 | 34 |
thoracic cavity | 4.74e-08 | 34 |
respiratory tract | 5.52e-08 | 54 |
anterior region of body | 5.79e-08 | 62 |
craniocervical region | 5.79e-08 | 62 |
orifice | 6.58e-08 | 36 |
kidney | 1.12e-07 | 26 |
kidney mesenchyme | 1.12e-07 | 26 |
upper urinary tract | 1.12e-07 | 26 |
kidney rudiment | 1.12e-07 | 26 |
kidney field | 1.12e-07 | 26 |
head | 2.89e-07 | 56 |
developing anatomical structure | 2.90e-07 | 581 |
nephron tubule epithelium | 3.35e-07 | 10 |
epithelial fold | 7.21e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.12e-18 | 106 |
cell type cancer | 4.20e-14 | 143 |
squamous cell carcinoma | 7.47e-11 | 14 |
adenocarcinoma | 4.18e-08 | 25 |