FFCP PHASE1:Hg19::chr10:119000644..119000655,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6571 | |EntrezGene=6571 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10935 | |HGNC=10935 | ||
|TSSclassifier=strong | |||
|UniProt=Q05940 | |UniProt=Q05940 | ||
|association_with_transcript=40bp_to_ENST00000298472,ENST00000497497_5end | |association_with_transcript=40bp_to_ENST00000298472,ENST00000497497_5end | ||
|cluster_id=chr10:119000644..119000655,+ | |||
|coexpression_cluster_id=C12 | |coexpression_cluster_id=C12 | ||
|description=CAGE_peak_3_at_SLC18A2_5end | |description=CAGE_peak_3_at_SLC18A2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002274!9.07e-12!5;CL:0000457!9.07e-12!5;CL:0002191!9.07e-12!5;CL:0000097!9.07e-12!5;CL:0000831!9.07e-12!5;CL:0002028!9.07e-12!5;CL:0000451!2.01e-10!10;CL:0000163!2.09e-08!9;CL:0000990!2.42e-07!8;CL:0000784!4.87e-07!3 | |ontology_enrichment_celltype=CL:0002274!9.07e-12!5;CL:0000457!9.07e-12!5;CL:0002191!9.07e-12!5;CL:0000097!9.07e-12!5;CL:0000831!9.07e-12!5;CL:0002028!9.07e-12!5;CL:0000451!2.01e-10!10;CL:0000163!2.09e-08!9;CL:0000990!2.42e-07!8;CL:0000784!4.87e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000097;3.14e-34;5!CL:0000163;5.90e-19;9!CL:0001014;1.89e-14;2!CL:0001016;1.89e-14;2!CL:0000840;1.99e-10;5!CL:0000451;1.24e-09;10!CL:0000784;2.62e-09;3!CL:0000990;4.23e-07;8 | |ontology_enrichment_celltype_v019=CL:0000097;3.14e-34;5!CL:0000163;5.90e-19;9!CL:0001014;1.89e-14;2!CL:0001016;1.89e-14;2!CL:0000840;1.99e-10;5!CL:0000451;1.24e-09;10!CL:0000784;2.62e-09;3!CL:0000990;4.23e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000097,3.15e-34,5;CL:0002028,3.15e-34,5;CL:0000163,5.91e-19,9;CL:0001014,1.89e-14,2;CL:0001016,1.89e-14,2;CL:0000840,1.70e-10,5;CL:0001029,1.70e-10,5;CL:0000451,1.01e-09,10;CL:0000784,1.78e-09,3;CL:0000763,3.10e-09,108;CL:0000049,3.10e-09,108;CL:0000990,3.81e-07,8;CL:0000037,7.29e-07,168 | |||
|ontology_enrichment_development_v019=UBERON:0004874;1.35e-07;1 | |ontology_enrichment_development_v019=UBERON:0004874;1.35e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:8552;4.50e-08;1!DOID:1036;4.76e-08;8!DOID:8692;8.29e-07;31 | |ontology_enrichment_disease_v019=DOID:8552;4.50e-08;1!DOID:1036;4.76e-08;8!DOID:8692;8.29e-07;31 | ||
|ontology_enrichment_disease_v019_2=DOID:8552,4.35e-08,1;DOID:1036,4.76e-08,8;DOID:1240,1.68e-07,39;DOID:8692,3.49e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.25e-17!115;UBERON:0000178!3.45e-07!15;UBERON:0000179!3.45e-07!15;UBERON:0000463!3.45e-07!15 | |ontology_enrichment_uberon=UBERON:0007023!4.25e-17!115;UBERON:0000178!3.45e-07!15;UBERON:0000179!3.45e-07!15;UBERON:0000463!3.45e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;7.79e-14;2!UBERON:0005058;7.79e-14;2!UBERON:0009113;7.79e-14;2!UBERON:0005795;7.70e-08;1!UBERON:0000989;1.35e-07;1!UBERON:0008811;1.35e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0002370;7.79e-14;2!UBERON:0005058;7.79e-14;2!UBERON:0009113;7.79e-14;2!UBERON:0005795;7.70e-08;1!UBERON:0000989;1.35e-07;1!UBERON:0008811;1.35e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.00e-08,98;UBERON:0003061,1.00e-08,98;UBERON:0002193,1.06e-07,108;UBERON:0000989,1.44e-07,1;UBERON:0008811,1.44e-07,1;UBERON:0006258,1.44e-07,1;UBERON:0005876,1.44e-07,1;UBERON:0004874,1.44e-07,1;UBERON:0002370,2.20e-07,4;UBERON:0005058,2.20e-07,4;UBERON:0009113,2.20e-07,4;UBERON:0003295,2.20e-07,4;UBERON:0005562,2.20e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.154816123316076,0,0,0,0,0,0.587200878669695,0,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,2.64342657158052,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,1.90792499444274,1.71598473234038,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8239177095026,35.5715673413433,49.7587477297853,47.4154646741803,53.148064472506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,1.16106791782163,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.52234282769651,1.52927441428475,0,0.714695326373367,0.411362273086194,1.94541993357815,0.540031437238115,0,0,0,0,0,0,0,0.159426272728822,0,0,0,3.24621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,5.40911356951966,0.33307196799782,5.63948020351398,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07765697960252,0,0,0,0,0,0,0,7.15353087370155,0.156980256395025,7.81194904930735,0,0,0,0,2.2251121057253,0,0,0,0,0.995261931078505,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0.803765742325096,0.550157746388935,0.83088067605837,6.74921674654501,8.51182150013745,0,0,0.0788057072991982,0.314727528809989,0,0,0,0,0,0,0,0,0,0,9.52273240692332,0,0,0.146552233678082,0,0.129282956361551,1.3223260174269,0,0,0.640724475406168,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372578417648301,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.163565394255844,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.970423302570136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0.781514011233092,0,0,0,0,0,0,0,0.546974809018219,0,1.48863353516788,0,0,0,0,0,0,0,0,0,0.475788130837822,0,0,0,0.863424021355654,0,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,1.6941912305844,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,1.46067277649303,0,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,1.55013383606415,3.5382587148639,0,0.0636471582781649,0.202117188958219,0,0.684466602170562,0.202056159043763,0.143444410785353,0.332660356546013,0,0,0,0,0,0.977931553462932,2.03448089157869,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.154816123316076,0,0,0,0,0,0.587200878669695,0,0,0.217010870715852,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,2.64342657158052,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,1.90792499444274,1.71598473234038,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.265059536642971,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.8239177095026,35.5715673413433,49.7587477297853,47.4154646741803,53.148064472506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,1.16106791782163,0,0,0,0,0,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.52234282769651,1.52927441428475,0,0.714695326373367,0.411362273086194,1.94541993357815,0.540031437238115,0,0,0,0,0,0,0,0.159426272728822,0,0,0,3.24621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,5.40911356951966,0.33307196799782,5.63948020351398,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07765697960252,0,0,0,0,0,0,0,7.15353087370155,0.156980256395025,7.81194904930735,0,0,0,0,2.2251121057253,0,0,0,0,0.995261931078505,0.265372693510018,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0.803765742325096,0.550157746388935,0.83088067605837,6.74921674654501,8.51182150013745,0,0,0.0788057072991982,0.314727528809989,0,0,0,0,0,0,0,0,0,0,9.52273240692332,0,0,0.146552233678082,0,0.129282956361551,1.3223260174269,0,0,0.640724475406168,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372578417648301,0,0,0,0,0,0,1.44921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265729680626726,0.163565394255844,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.970423302570136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0.781514011233092,0,0,0,0,0,0,0,0.546974809018219,0,1.48863353516788,0,0,0,0,0,0,0,0,0,0.475788130837822,0,0,0,0.863424021355654,0,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,1.6941912305844,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0.193373663920732,0,0,0,0,1.46067277649303,0,0.143339583151451,0,0,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,1.55013383606415,3.5382587148639,0,0.0636471582781649,0.202117188958219,0,0.684466602170562,0.202056159043763,0.143444410785353,0.332660356546013,0,0,0,0,0,0.977931553462932,2.03448089157869,0,0.201273793591026,0 | ||
|short_description=p3@SLC18A2 | |short_description=p3@SLC18A2 | ||
}} | }} |
Latest revision as of 15:16, 16 September 2015
Short description: | p3@SLC18A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC18A2_5end |
Coexpression cluster: | C12_Mast_Basophils_immature_chorionic_mature_CD14_Eosinophils |
Association with transcript: | 40bp_to_ENST00000298472, ENST00000497497_5end |
EntrezGene: | SLC18A2 |
HGNC: | 10935 |
UniProt: | Q05940 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 3.15e-34 | 5 |
basophil mast progenitor cell | 3.15e-34 | 5 |
endocrine cell | 5.91e-19 | 9 |
CD1a-positive Langerhans cell | 1.89e-14 | 2 |
immature CD1a-positive Langerhans cell | 1.89e-14 | 2 |
immature conventional dendritic cell | 1.70e-10 | 5 |
common dendritic progenitor | 1.70e-10 | 5 |
dendritic cell | 1.01e-09 | 10 |
plasmacytoid dendritic cell | 1.78e-09 | 3 |
myeloid cell | 3.10e-09 | 108 |
common myeloid progenitor | 3.10e-09 | 108 |
conventional dendritic cell | 3.81e-07 | 8 |
hematopoietic stem cell | 7.29e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.00e-08 | 98 |
blood island | 1.00e-08 | 98 |
hemolymphoid system | 1.06e-07 | 108 |
penis | 1.44e-07 | 1 |
intromittent organ | 1.44e-07 | 1 |
lateral plate mesenchyme | 1.44e-07 | 1 |
undifferentiated genital tubercle | 1.44e-07 | 1 |
somatopleure | 1.44e-07 | 1 |
thymus | 2.20e-07 | 4 |
hemolymphoid system gland | 2.20e-07 | 4 |
thymic region | 2.20e-07 | 4 |
pharyngeal gland | 2.20e-07 | 4 |
thymus primordium | 2.20e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
chronic myeloid leukemia | 4.35e-08 | 1 |
chronic leukemia | 4.76e-08 | 8 |
leukemia | 1.68e-07 | 39 |
myeloid leukemia | 3.49e-07 | 31 |