FFCP PHASE1:Hg19::chr10:18242109..18242116,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221074 | |EntrezGene=221074 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=20860 | |HGNC=20860 | ||
|TSSclassifier=strong | |||
|UniProt=F8WD99 | |UniProt=F8WD99 | ||
|association_with_transcript=-58bp_to_ENST00000425219_5end | |association_with_transcript=-58bp_to_ENST00000425219_5end | ||
|cluster_id=chr10:18242109..18242116,+ | |||
|coexpression_cluster_id=C160 | |coexpression_cluster_id=C160 | ||
|description=CAGE_peak_9_at_SLC39A12_5end | |description=CAGE_peak_9_at_SLC39A12_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | |ontology_enrichment_development_v019=UBERON:0003056;6.76e-18;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.42e-32!94;UBERON:0001016!1.42e-32!94;UBERON:0001896!2.41e-32!3;UBERON:0005290!2.41e-32!3;UBERON:0010096!2.41e-32!3;UBERON:0005743!4.93e-32!86;UBERON:0003075!1.72e-28!86;UBERON:0007284!1.72e-28!86;UBERON:0001049!2.20e-28!57;UBERON:0005068!2.20e-28!57;UBERON:0006241!2.20e-28!57;UBERON:0007135!2.20e-28!57;UBERON:0001893!3.45e-28!34;UBERON:0002616!2.23e-27!59;UBERON:0002346!3.83e-27!90;UBERON:0000955!1.01e-26!69;UBERON:0006238!1.01e-26!69;UBERON:0001017!8.93e-26!82;UBERON:0001869!3.43e-24!32;UBERON:0002791!1.53e-23!33;UBERON:0002780!2.79e-23!41;UBERON:0001890!2.79e-23!41;UBERON:0006240!2.79e-23!41;UBERON:0003080!1.04e-22!42;UBERON:0003056!1.92e-22!61;UBERON:0002619!1.97e-21!22;UBERON:0007023!4.87e-21!115;UBERON:0000033!3.50e-19!123;UBERON:0000956!6.81e-19!25;UBERON:0000203!6.81e-19!25;UBERON:0000153!3.36e-18!129;UBERON:0007811!3.36e-18!129;UBERON:0002020!5.24e-18!34;UBERON:0003528!5.24e-18!34;UBERON:0004121!2.35e-17!169;UBERON:0001950!2.49e-17!20;UBERON:0000924!6.61e-17!173;UBERON:0006601!6.61e-17!173;UBERON:0002298!1.55e-12!8;UBERON:0002336!5.05e-12!1;UBERON:0001018!5.05e-12!1;UBERON:0002473!5.05e-12!1;UBERON:0005340!5.05e-12!1;UBERON:0002316!5.05e-12!1;UBERON:0003544!5.05e-12!1;UBERON:0001020!5.05e-12!1;UBERON:0005970!5.05e-12!1;UBERON:0002437!5.05e-12!1;UBERON:0002902!8.64e-12!1;UBERON:0009899!8.64e-12!1;UBERON:0007190!1.19e-11!1;UBERON:0002581!1.32e-11!1;UBERON:0001882!1.47e-11!1;UBERON:0005403!1.47e-11!1;UBERON:0002022!1.81e-11!1;UBERON:0000966!1.42e-09!5;UBERON:0005388!1.42e-09!5;UBERON:0001802!1.42e-09!5;UBERON:0000349!2.57e-09!5;UBERON:0001872!2.91e-09!5;UBERON:0004733!1.56e-08!12;UBERON:0002028!1.56e-08!12;UBERON:0007277!1.56e-08!12;UBERON:0004732!6.47e-08!13;UBERON:0000200!8.71e-08!6;UBERON:0000064!3.27e-07!219;UBERON:0000025!4.39e-07!194;UBERON:0003076!6.37e-07!15;UBERON:0003057!6.37e-07!15 | |ontology_enrichment_uberon=UBERON:0000073!1.42e-32!94;UBERON:0001016!1.42e-32!94;UBERON:0001896!2.41e-32!3;UBERON:0005290!2.41e-32!3;UBERON:0010096!2.41e-32!3;UBERON:0005743!4.93e-32!86;UBERON:0003075!1.72e-28!86;UBERON:0007284!1.72e-28!86;UBERON:0001049!2.20e-28!57;UBERON:0005068!2.20e-28!57;UBERON:0006241!2.20e-28!57;UBERON:0007135!2.20e-28!57;UBERON:0001893!3.45e-28!34;UBERON:0002616!2.23e-27!59;UBERON:0002346!3.83e-27!90;UBERON:0000955!1.01e-26!69;UBERON:0006238!1.01e-26!69;UBERON:0001017!8.93e-26!82;UBERON:0001869!3.43e-24!32;UBERON:0002791!1.53e-23!33;UBERON:0002780!2.79e-23!41;UBERON:0001890!2.79e-23!41;UBERON:0006240!2.79e-23!41;UBERON:0003080!1.04e-22!42;UBERON:0003056!1.92e-22!61;UBERON:0002619!1.97e-21!22;UBERON:0007023!4.87e-21!115;UBERON:0000033!3.50e-19!123;UBERON:0000956!6.81e-19!25;UBERON:0000203!6.81e-19!25;UBERON:0000153!3.36e-18!129;UBERON:0007811!3.36e-18!129;UBERON:0002020!5.24e-18!34;UBERON:0003528!5.24e-18!34;UBERON:0004121!2.35e-17!169;UBERON:0001950!2.49e-17!20;UBERON:0000924!6.61e-17!173;UBERON:0006601!6.61e-17!173;UBERON:0002298!1.55e-12!8;UBERON:0002336!5.05e-12!1;UBERON:0001018!5.05e-12!1;UBERON:0002473!5.05e-12!1;UBERON:0005340!5.05e-12!1;UBERON:0002316!5.05e-12!1;UBERON:0003544!5.05e-12!1;UBERON:0001020!5.05e-12!1;UBERON:0005970!5.05e-12!1;UBERON:0002437!5.05e-12!1;UBERON:0002902!8.64e-12!1;UBERON:0009899!8.64e-12!1;UBERON:0007190!1.19e-11!1;UBERON:0002581!1.32e-11!1;UBERON:0001882!1.47e-11!1;UBERON:0005403!1.47e-11!1;UBERON:0002022!1.81e-11!1;UBERON:0000966!1.42e-09!5;UBERON:0005388!1.42e-09!5;UBERON:0001802!1.42e-09!5;UBERON:0000349!2.57e-09!5;UBERON:0001872!2.91e-09!5;UBERON:0004733!1.56e-08!12;UBERON:0002028!1.56e-08!12;UBERON:0007277!1.56e-08!12;UBERON:0004732!6.47e-08!13;UBERON:0000200!8.71e-08!6;UBERON:0000064!3.27e-07!219;UBERON:0000025!4.39e-07!194;UBERON:0003076!6.37e-07!15;UBERON:0003057!6.37e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0001896;4.68e-66;3!UBERON:0005290;4.68e-66;3!UBERON:0002298;9.87e-34;6!UBERON:0004733;1.71e-17;12!UBERON:0002028;1.71e-17;12!UBERON:0004732;3.07e-16;13!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.42e-11;20!UBERON:0002104;1.61e-10;21!UBERON:0000020;1.07e-09;23!UBERON:0001032;2.45e-09;24!UBERON:0004456;2.45e-09;24 | |ontology_enrichment_uberon_v019=UBERON:0001896;4.68e-66;3!UBERON:0005290;4.68e-66;3!UBERON:0002298;9.87e-34;6!UBERON:0004733;1.71e-17;12!UBERON:0002028;1.71e-17;12!UBERON:0004732;3.07e-16;13!UBERON:0000966;2.66e-11;5!UBERON:0005388;2.66e-11;5!UBERON:0001802;2.66e-11;5!UBERON:0000970;5.42e-11;20!UBERON:0002104;1.61e-10;21!UBERON:0000020;1.07e-09;23!UBERON:0001032;2.45e-09;24!UBERON:0004456;2.45e-09;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001896,4.68e-66,3;UBERON:0005290,4.68e-66,3;UBERON:0010096,4.68e-66,3;UBERON:0002298,9.87e-34,6;UBERON:0004733,1.71e-17,12;UBERON:0002028,1.71e-17,12;UBERON:0007277,1.71e-17,12;UBERON:0004732,3.07e-16,13;UBERON:0003076,3.15e-14,15;UBERON:0003057,3.15e-14,15;UBERON:0000970,1.61e-10,21;UBERON:0002104,1.61e-10,21;UBERON:0000966,1.22e-09,6;UBERON:0005388,1.22e-09,6;UBERON:0001802,1.22e-09,6;UBERON:0000020,2.45e-09,24;UBERON:0001032,2.45e-09,24;UBERON:0004456,2.45e-09,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35588444468319,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,1.99672292766334,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,2.35872595782966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337005664903385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35588444468319,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,1.99672292766334,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,2.35872595782966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p9@SLC39A12 | |short_description=p9@SLC39A12 | ||
}} | }} |
Latest revision as of 11:46, 17 September 2015
Short description: | p9@SLC39A12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SLC39A12_5end |
Coexpression cluster: | C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral |
Association with transcript: | -58bp_to_ENST00000425219_5end |
EntrezGene: | SLC39A12 |
HGNC: | 20860 |
UniProt: | F8WD99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
medulla oblongata | 4.68e-66 | 3 |
myelencephalon | 4.68e-66 | 3 |
future myelencephalon | 4.68e-66 | 3 |
brainstem | 9.87e-34 | 6 |
segmental subdivision of hindbrain | 1.71e-17 | 12 |
hindbrain | 1.71e-17 | 12 |
presumptive hindbrain | 1.71e-17 | 12 |
segmental subdivision of nervous system | 3.07e-16 | 13 |
posterior neural tube | 3.15e-14 | 15 |
chordal neural plate | 3.15e-14 | 15 |
eye | 1.61e-10 | 21 |
visual system | 1.61e-10 | 21 |
retina | 1.22e-09 | 6 |
photoreceptor array | 1.22e-09 | 6 |
posterior segment of eyeball | 1.22e-09 | 6 |
sense organ | 2.45e-09 | 24 |
sensory system | 2.45e-09 | 24 |
entire sense organ system | 2.45e-09 | 24 |