FFCP PHASE1:Hg19::chr11:61310346..61310389,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-476bp_to_uc001nrw.1_5end | |association_with_transcript=-476bp_to_uc001nrw.1_5end | ||
|cluster_id=chr11:61310346..61310389,- | |||
|coexpression_cluster_id=C153 | |coexpression_cluster_id=C153 | ||
|description=CAGE_peak_1_at_uc001nrw.1_5end | |description=CAGE_peak_1_at_uc001nrw.1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;1.55e-98;3 | |ontology_enrichment_development_v019=UBERON:0006215;1.55e-98;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1115;1.29e-07;20 | |ontology_enrichment_disease_v019=DOID:1115;1.29e-07;20 | ||
|ontology_enrichment_disease_v019_2=DOID:1115,1.33e-07,20 | |||
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| ||
|short_description=p1@uc001nrw.1 | |short_description=p1@uc001nrw.1 | ||
}} | }} |
Latest revision as of 23:27, 23 July 2015
Short description: | p1@uc001nrw.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001nrw.1_5end |
Coexpression cluster: | C153_rhabdomyosarcoma_liposarcoma_pancreatic_somatostatinoma_Reticulocytes_lymphoma_testicular |
Association with transcript: | -476bp_to_uc001nrw.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebellum | 6.35e-50 | 6 |
rhombic lip | 6.35e-50 | 6 |
occipital pole | 7.06e-34 | 1 |
pole of cerebral hemisphere | 7.06e-34 | 1 |
regional part of metencephalon | 1.24e-33 | 9 |
metencephalon | 1.24e-33 | 9 |
future metencephalon | 1.24e-33 | 9 |
segmental subdivision of hindbrain | 1.81e-25 | 12 |
hindbrain | 1.81e-25 | 12 |
presumptive hindbrain | 1.81e-25 | 12 |
segmental subdivision of nervous system | 1.39e-23 | 13 |
posterior neural tube | 1.47e-20 | 15 |
chordal neural plate | 1.47e-20 | 15 |
regional part of nervous system | 2.34e-10 | 53 |
regional part of brain | 2.34e-10 | 53 |
neural tube | 7.69e-10 | 56 |
neural rod | 7.69e-10 | 56 |
future spinal cord | 7.69e-10 | 56 |
neural keel | 7.69e-10 | 56 |
brain | 4.15e-08 | 68 |
future brain | 4.15e-08 | 68 |
occipital lobe | 7.01e-08 | 5 |
central nervous system | 6.53e-07 | 81 |
neural plate | 6.53e-07 | 82 |
presumptive neural plate | 6.53e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
sarcoma | 1.33e-07 | 20 |