FFCP PHASE1:Hg19::chr7:73624327..73624350,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7462 | |EntrezGene=7462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12749 | |HGNC=12749 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZY6,F8W947 | |UniProt=Q9GZY6,F8W947 | ||
|association_with_transcript=0bp_to_ENST00000275635,ENST00000361082,ENST00000488266_5end | |association_with_transcript=0bp_to_ENST00000275635,ENST00000361082,ENST00000488266_5end | ||
|cluster_id=chr7:73624327..73624350,+ | |||
|coexpression_cluster_id=C4697 | |coexpression_cluster_id=C4697 | ||
|description=CAGE_peak_1_at_LAT2_5end | |description=CAGE_peak_1_at_LAT2_5end | ||
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|ontology_enrichment_celltype=CL:0000037!1.83e-60!172;CL:0000566!1.83e-60!172;CL:0002032!9.62e-58!165;CL:0000837!9.62e-58!165;CL:0000988!6.40e-53!182;CL:0000738!2.03e-52!140;CL:0002031!1.58e-45!124;CL:0000763!2.33e-43!112;CL:0000049!2.33e-43!112;CL:0002087!5.48e-43!119;CL:0000766!2.81e-38!76;CL:0000557!7.34e-34!71;CL:0000839!2.14e-33!70;CL:0002009!6.67e-30!65;CL:0002194!1.65e-29!63;CL:0000576!1.65e-29!63;CL:0000040!1.65e-29!63;CL:0000559!1.65e-29!63;CL:0002057!3.91e-27!42;CL:0000860!2.33e-25!45;CL:0000945!7.63e-13!24;CL:0000826!7.63e-13!24;CL:0000542!1.98e-12!53;CL:0000051!1.98e-12!53;CL:0000838!5.40e-12!52;CL:0000236!6.50e-09!14 | |ontology_enrichment_celltype=CL:0000037!1.83e-60!172;CL:0000566!1.83e-60!172;CL:0002032!9.62e-58!165;CL:0000837!9.62e-58!165;CL:0000988!6.40e-53!182;CL:0000738!2.03e-52!140;CL:0002031!1.58e-45!124;CL:0000763!2.33e-43!112;CL:0000049!2.33e-43!112;CL:0002087!5.48e-43!119;CL:0000766!2.81e-38!76;CL:0000557!7.34e-34!71;CL:0000839!2.14e-33!70;CL:0002009!6.67e-30!65;CL:0002194!1.65e-29!63;CL:0000576!1.65e-29!63;CL:0000040!1.65e-29!63;CL:0000559!1.65e-29!63;CL:0002057!3.91e-27!42;CL:0000860!2.33e-25!45;CL:0000945!7.63e-13!24;CL:0000826!7.63e-13!24;CL:0000542!1.98e-12!53;CL:0000051!1.98e-12!53;CL:0000838!5.40e-12!52;CL:0000236!6.50e-09!14 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.44e-24;33!CL:0002057;2.44e-24;33!CL:0000473;4.18e-23;39!CL:0000234;4.18e-23;39!CL:0000576;8.28e-22;48!CL:0000766;4.12e-20;69!CL:0000763;6.92e-17;100!CL:0000945;6.75e-15;24!CL:0002087;2.43e-14;104!CL:0000738;8.87e-13;136!CL:0000988;2.11e-10;177!CL:0000236;1.11e-09;13!CL:0000542;1.57e-07;53!CL:0000094;2.11e-07;8 | |ontology_enrichment_celltype_v019=CL:0000860;2.44e-24;33!CL:0002057;2.44e-24;33!CL:0000473;4.18e-23;39!CL:0000234;4.18e-23;39!CL:0000576;8.28e-22;48!CL:0000766;4.12e-20;69!CL:0000763;6.92e-17;100!CL:0000945;6.75e-15;24!CL:0002087;2.43e-14;104!CL:0000738;8.87e-13;136!CL:0000988;2.11e-10;177!CL:0000236;1.11e-09;13!CL:0000542;1.57e-07;53!CL:0000094;2.11e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.09e-68,168;CL:0002032,3.88e-66,161;CL:0000837,3.88e-66,161;CL:0000988,8.09e-62,177;CL:0000738,9.51e-58,136;CL:0000763,1.98e-52,108;CL:0000049,1.98e-52,108;CL:0002031,3.00e-52,120;CL:0002087,2.87e-49,115;CL:0000766,1.88e-47,72;CL:0000557,4.03e-42,67;CL:0000839,1.41e-41,66;CL:0002009,2.23e-37,61;CL:0002194,5.81e-37,59;CL:0000576,5.81e-37,59;CL:0000040,5.81e-37,59;CL:0000559,5.81e-37,59;CL:0000473,5.07e-35,48;CL:0000234,5.07e-35,48;CL:0000860,1.06e-31,42;CL:0002057,1.06e-31,42;CL:0000945,7.53e-15,24;CL:0000826,7.53e-15,24;CL:0000542,2.69e-12,53;CL:0000051,2.69e-12,53;CL:0000838,8.25e-12,52;CL:0000236,3.20e-10,14;CL:0000094,2.13e-07,8;CL:0000134,3.63e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;5.90e-23;42!CL:0000049;1.54e-14;108!CL:0000051;1.57e-07;53 | |ontology_enrichment_development_v019=CL:0002057;5.90e-23;42!CL:0000049;1.54e-14;108!CL:0000051;1.57e-07;53 | ||
|ontology_enrichment_disease=DOID:2531!2.73e-08!51;DOID:0060083!2.73e-08!51;DOID:8692!3.44e-07!31 | |ontology_enrichment_disease=DOID:2531!2.73e-08!51;DOID:0060083!2.73e-08!51;DOID:8692!3.44e-07!31 | ||
|ontology_enrichment_disease_v019=DOID:8692;8.48e-09;31!DOID:1240;3.39e-07;39 | |ontology_enrichment_disease_v019=DOID:8692;8.48e-09;31!DOID:1240;3.39e-07;39 | ||
|ontology_enrichment_disease_v019_2=DOID:2531,4.93e-10,51;DOID:0060083,4.93e-10,51;DOID:8692,2.62e-09,31;DOID:1240,8.92e-09,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.78e-37!102;UBERON:0003061!2.78e-37!102;UBERON:0002193!9.56e-35!112;UBERON:0002371!3.79e-31!80;UBERON:0001474!5.77e-28!86;UBERON:0007023!7.85e-23!115;UBERON:0004765!2.60e-21!101;UBERON:0001434!2.60e-21!101;UBERON:0002405!5.12e-21!115;UBERON:0001049!1.40e-07!57;UBERON:0005068!1.40e-07!57;UBERON:0006241!1.40e-07!57;UBERON:0007135!1.40e-07!57 | |ontology_enrichment_uberon=UBERON:0002390!2.78e-37!102;UBERON:0003061!2.78e-37!102;UBERON:0002193!9.56e-35!112;UBERON:0002371!3.79e-31!80;UBERON:0001474!5.77e-28!86;UBERON:0007023!7.85e-23!115;UBERON:0004765!2.60e-21!101;UBERON:0001434!2.60e-21!101;UBERON:0002405!5.12e-21!115;UBERON:0001049!1.40e-07!57;UBERON:0005068!1.40e-07!57;UBERON:0006241!1.40e-07!57;UBERON:0007135!1.40e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0007023;6.80e-07;114 | |ontology_enrichment_uberon_v019=UBERON:0007023;6.80e-07;114 | ||
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| ||
|short_description=p1@LAT2 | |short_description=p1@LAT2 | ||
}} | }} |
Latest revision as of 11:25, 19 September 2015
Short description: | p1@LAT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LAT2_5end |
Coexpression cluster: | C4697_Eosinophils_Mast_acute_non_CD14_Neutrophils_myelodysplastic |
Association with transcript: | 0bp_to_ENST00000275635, ENST00000361082, ENST00000488266_5end |
EntrezGene: | LAT2 |
HGNC: | 12749 |
UniProt: | Q9GZY6F8W947 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.09e-68 | 168 |
hematopoietic oligopotent progenitor cell | 3.88e-66 | 161 |
hematopoietic multipotent progenitor cell | 3.88e-66 | 161 |
hematopoietic cell | 8.09e-62 | 177 |
leukocyte | 9.51e-58 | 136 |
myeloid cell | 1.98e-52 | 108 |
common myeloid progenitor | 1.98e-52 | 108 |
hematopoietic lineage restricted progenitor cell | 3.00e-52 | 120 |
nongranular leukocyte | 2.87e-49 | 115 |
myeloid leukocyte | 1.88e-47 | 72 |
granulocyte monocyte progenitor cell | 4.03e-42 | 67 |
myeloid lineage restricted progenitor cell | 1.41e-41 | 66 |
macrophage dendritic cell progenitor | 2.23e-37 | 61 |
monopoietic cell | 5.81e-37 | 59 |
monocyte | 5.81e-37 | 59 |
monoblast | 5.81e-37 | 59 |
promonocyte | 5.81e-37 | 59 |
defensive cell | 5.07e-35 | 48 |
phagocyte | 5.07e-35 | 48 |
classical monocyte | 1.06e-31 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-31 | 42 |
lymphocyte of B lineage | 7.53e-15 | 24 |
pro-B cell | 7.53e-15 | 24 |
lymphocyte | 2.69e-12 | 53 |
common lymphoid progenitor | 2.69e-12 | 53 |
lymphoid lineage restricted progenitor cell | 8.25e-12 | 52 |
B cell | 3.20e-10 | 14 |
granulocyte | 2.13e-07 | 8 |
mesenchymal cell | 3.63e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.24e-44 | 98 |
blood island | 1.24e-44 | 98 |
hemolymphoid system | 9.68e-42 | 108 |
bone marrow | 1.99e-37 | 76 |
immune system | 5.76e-36 | 93 |
bone element | 2.17e-33 | 82 |
skeletal element | 1.49e-27 | 90 |
adult organism | 9.26e-25 | 114 |
skeletal system | 1.91e-22 | 100 |
lateral plate mesoderm | 1.28e-09 | 203 |
neural tube | 9.17e-09 | 56 |
neural rod | 9.17e-09 | 56 |
future spinal cord | 9.17e-09 | 56 |
neural keel | 9.17e-09 | 56 |
regional part of nervous system | 6.00e-08 | 53 |
regional part of brain | 6.00e-08 | 53 |
regional part of forebrain | 1.40e-07 | 41 |
forebrain | 1.40e-07 | 41 |
anterior neural tube | 1.40e-07 | 41 |
future forebrain | 1.40e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 4.93e-10 | 51 |
immune system cancer | 4.93e-10 | 51 |
myeloid leukemia | 2.62e-09 | 31 |
leukemia | 8.92e-09 | 39 |