FFCP PHASE1:Hg19::chr1:94526365..94526386,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=24 | |EntrezGene=24 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=34 | |HGNC=34 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-78bp_to_U66691_5end | |association_with_transcript=-78bp_to_U66691_5end | ||
|cluster_id=chr1:94526365..94526386,- | |||
|coexpression_cluster_id=C357 | |coexpression_cluster_id=C357 | ||
|description=CAGE_peak_2_at_ABCA4_5end | |description=CAGE_peak_2_at_ABCA4_5end | ||
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|ontology_enrichment_celltype=CL:0002139!1.48e-33!24;CL:0000115!4.57e-28!35;CL:0002078!1.63e-22!44;CL:0000071!1.92e-22!18;CL:0002546!1.92e-22!18;CL:1000413!4.82e-17!9;CL:0000213!1.42e-15!57;CL:0000215!1.42e-15!57;CL:0005020!4.70e-13!6;CL:0002138!4.70e-13!6;CL:0005022!4.70e-13!6;CL:0002544!7.65e-12!6;CL:0002144!1.53e-07!3;CL:0000064!3.57e-07!3;CL:0005012!3.57e-07!3;CL:0000067!3.57e-07!3;CL:0002304!3.57e-07!3 | |ontology_enrichment_celltype=CL:0002139!1.48e-33!24;CL:0000115!4.57e-28!35;CL:0002078!1.63e-22!44;CL:0000071!1.92e-22!18;CL:0002546!1.92e-22!18;CL:1000413!4.82e-17!9;CL:0000213!1.42e-15!57;CL:0000215!1.42e-15!57;CL:0005020!4.70e-13!6;CL:0002138!4.70e-13!6;CL:0005022!4.70e-13!6;CL:0002544!7.65e-12!6;CL:0002144!1.53e-07!3;CL:0000064!3.57e-07!3;CL:0005012!3.57e-07!3;CL:0000067!3.57e-07!3;CL:0002304!3.57e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002139;2.34e-49;24!CL:0002138;2.05e-38;6!CL:0000115;1.30e-35;36!CL:0002078;7.76e-22;45!CL:0000071;1.94e-21;18!CL:0002144;1.11e-20;3!CL:0000064;2.92e-19;3!CL:0000067;2.92e-19;3!CL:0005012;2.92e-19;3!CL:0002304;2.92e-19;3!CL:0002549;7.13e-14;2!CL:0000213;1.12e-13;58!CL:0000215;1.12e-13;58!CL:1000413;3.12e-11;9!CL:0000708;4.35e-09;3!CL:0000342;1.97e-07;1!CL:0002565;1.97e-07;1 | |ontology_enrichment_celltype_v019=CL:0002139;2.34e-49;24!CL:0002138;2.05e-38;6!CL:0000115;1.30e-35;36!CL:0002078;7.76e-22;45!CL:0000071;1.94e-21;18!CL:0002144;1.11e-20;3!CL:0000064;2.92e-19;3!CL:0000067;2.92e-19;3!CL:0005012;2.92e-19;3!CL:0002304;2.92e-19;3!CL:0002549;7.13e-14;2!CL:0000213;1.12e-13;58!CL:0000215;1.12e-13;58!CL:1000413;3.12e-11;9!CL:0000708;4.35e-09;3!CL:0000342;1.97e-07;1!CL:0002565;1.97e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.11e-49,24;CL:0000115,5.65e-42,36;CL:0005020,2.26e-38,6;CL:0002138,2.26e-38,6;CL:0005022,2.26e-38,6;CL:0002078,6.31e-33,45;CL:0000213,8.24e-25,58;CL:0000215,8.24e-25,58;CL:0000071,2.29e-21,18;CL:0002546,2.29e-21,18;CL:0002144,1.11e-20,3;CL:0000064,1.66e-19,3;CL:0000067,1.66e-19,3;CL:0005012,1.66e-19,3;CL:0002304,1.66e-19,3;CL:0002549,7.14e-14,2;CL:1000413,3.08e-11,9;CL:0000222,3.44e-10,121;CL:0000708,4.35e-09,3;CL:0000066,1.14e-07,253;CL:0000342,2.63e-07,1;CL:0002565,2.63e-07,1;CL:0002321,7.70e-07,250 | |||
|ontology_enrichment_development_v019=CL:0005022;2.05e-38;6!CL:0002546;1.94e-21;18 | |ontology_enrichment_development_v019=CL:0005022;2.05e-38;6!CL:0002546;1.94e-21;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3371;1.97e-07;1!DOID:4549;1.97e-07;1!DOID:5861;1.97e-07;1!DOID:6496;1.97e-07;1 | |ontology_enrichment_disease_v019=DOID:3371;1.97e-07;1!DOID:4549;1.97e-07;1!DOID:5861;1.97e-07;1!DOID:6496;1.97e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3371,1.48e-07,1;DOID:4549,1.48e-07,1;DOID:5861,1.48e-07,1;DOID:6496,1.48e-07,1 | |||
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|short_description=p2@ABCA4 | |short_description=p2@ABCA4 | ||
}} | }} |
Latest revision as of 22:37, 19 September 2015
Short description: | p2@ABCA4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ABCA4_5end |
Coexpression cluster: | C357_Endothelial_Lymphatic_Renal_Hepatic_seminal_breast_heart |
Association with transcript: | -78bp_to_U66691_5end |
EntrezGene: | ABCA4 |
HGNC: | 34 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.11e-49 | 24 |
endothelial cell | 5.65e-42 | 36 |
lymphangioblast | 2.26e-38 | 6 |
endothelial cell of lymphatic vessel | 2.26e-38 | 6 |
vascular lymphangioblast | 2.26e-38 | 6 |
meso-epithelial cell | 6.31e-33 | 45 |
lining cell | 8.24e-25 | 58 |
barrier cell | 8.24e-25 | 58 |
blood vessel endothelial cell | 2.29e-21 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.29e-21 | 18 |
capillary endothelial cell | 1.11e-20 | 3 |
ciliated cell | 1.66e-19 | 3 |
ciliated epithelial cell | 1.66e-19 | 3 |
multi-ciliated epithelial cell | 1.66e-19 | 3 |
non-pigmented ciliary epithelial cell | 1.66e-19 | 3 |
fibroblast of choroid plexus | 7.14e-14 | 2 |
endothelial cell of artery | 3.08e-11 | 9 |
mesodermal cell | 3.44e-10 | 121 |
leptomeningeal cell | 4.35e-09 | 3 |
epithelial cell | 1.14e-07 | 253 |
pigment cell (sensu Vertebrata) | 2.63e-07 | 1 |
iris pigment epithelial cell | 2.63e-07 | 1 |
embryonic cell | 7.70e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.48e-07 | 1 |
extraosseous chondrosarcoma | 1.48e-07 | 1 |
myxoid chondrosarcoma | 1.48e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 1.48e-07 | 1 |