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MCL coexpression mm9:102: Difference between revisions

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{{MCL_coexpression_mm9
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|coexpression_dpi_cluster_scores_mean=0.0140813768112157,-0.0101986899251739,-0.00694563726683319,-0.00687180401096331,-0.00292601890523973,0.00547296383290676,0.0119420634253085,0.846634972903157,0.988943659421875,0.925025543727797,0.390701777792841,0.319015480990569,0.781266125072807,0.719346699780243,0.0460022477239096,0.0858588277175633,0.0243158960625592,0.293741384056732,0.276657035808948,0.231442846490955,0.0396215195053953,0.0700925361709366,0.059378666768023,0.0278941695614581,0.0399638589567286,-0.00954198499207858,-0.0194100752125771,-0.00709727831884918,-0.000563124982686521,0.00495565329141403,0.00613540315423284,0.00254848217308356,-0.0212820912734416,-0.0396125912969546,0.0135410908607001,-0.00633199231659594,0.0106736009179805,0.101439867529213,0.0719757653924359,0.0592661952237326,0.165547081271883,0.116579825783063,0.0849999654128344,0.0058792142299853,0.00456813488106834,0.0127479302380304,0.00748431666099627,-0.00660118232217603,0.000595088797975237,0.00458821147702378,-0.00366051896125356,0.00832597473264227,0.423140281785336,0.768249601027686,0.69658194744126,-0.0150183129432979,-0.00548518497665427,-0.00593588595805582,-0.00444656941004085,0.00344824589673926,-0.00301660107538183,-0.00564828110367717,-0.0104499789200846,0.0189845886982073,0.0391997621345824,0.0229026713799858,0.0201158020277674,0.02787538720214,0.000698732692469179,0.00825788914908434,-0.000736415471792687,0.00615956936202611,0.00998441776561156,-0.00865121421582424,-0.00467136853355235,-0.00242334538746407,-0.0148052483444833,-0.00848576530436647,-0.0114744045033434,-0.00648372058119396,-0.00735091529965148,-0.00324249410264573,-0.0041533557843683,-0.00338134699800255,-0.00112828743445318,0.00693981374348292,0.00819571802554476,-0.00227528580835909,0.0155044063967549,-0.00472714534249804,0.170325334645064,0.0251206177085749,-0.0167852227066438,-0.0211812154308463,-0.0154560445742884,-0.0291955280868519,0.0242811216591173,-0.00891181988025402,-0.0073901998187308,-0.00148276387808335,0.0167008500183438,-0.00289790905792713,-0.0238132516740842,-0.0352119896191631,-0.00316246748012952,-0.00398243429476742,-0.00834053077845773,0.0311004093258849,0.202143033857471,0.0257188776510637,-0.000218160253962915,0.00645996997515367,0.00321611403594142,0.0084040942879973,0.0189172222660581,0.0034726264116983,0.0115487324545655,0.0305190535377698,0.0367937555276127,0.00805418160164863,0.0225673194007391,0.0162535587032849,-0.00896662164510537,0.00615877892711322,0.00837421264125369,0.0141410704397462,0.167406476539839,0.110439596310463,0.118629476703979,0.000919237905581874,0.00147594764208006,-0.00322196151066199,-0.00511393124641995,-0.00882161339192844,-0.000724709564141807,-0.000362688333027623,0.0223014603287127,0.050246382797375,0.0182638325922186,-0.0039595270159954,0.00597947220121853,0.00815706484526392,0.00456969799156336,0.00709855072344407,0.0125324544414513,0.00926264536957057,0.0109222639275301,0.00728759313115471,0.00989282644836309,0.014321197821041,0.0133466120684612,0.011675598814023,0.0100782129978264,0.0155720419611143,0.0189052484578806,0.00942454625708027,0.065170495736191,0.063703193734538,0.0719547033580487,-0.000608684700249231,-0.00106968385210216,0.00668696885837089,0.00139620084184454,0.0126782415616092,0.00858271089665456,0.00339896125742525,0.0121816123241755,0.0120169278274096,0.00524903893526618,0.0228954412159984,0.0187261365553966,0.0160241067982088,0.0211026154239839,0.0208759564784472,0.000846271357174383,0.00573086489141542,0.0221363068258664,-0.000868911546095314,0.00418958762139512,0.0041367740119817,-0.00203909018518541,-0.002220849638013,0.00352305660430366,-0.00505657660427011,0.00241325807664874,-0.00166637473804099,0.00801977654383843,0.0152017400291139,0.0116266201184257,0.0165736760789079,0.00525222765760054,0.0154665431103912,0.00877502211034097,0.00608193426336672,0.00996177205454657,0.0145287936848518,0.0176029745328456,0.0216133663796969,0.0220554443445378,0.0146357792086024,0.0170661107712076,0.0198248592494147,-0.00882536894631776,-0.0181621886051164,-0.0172206518034924,-0.019394656923214,-0.0200801011302102,-0.0120665800314027,-0.00357185795629914,0.00767651589151615,0.0162524907686517,0.00598034862796403,0.0329384319405377,0.0115947736337499,0.0130687882905449,-0.000260019661080505,-0.00354817421054554,0.00432186562718972,0.0946935907417104,0.00464713394184045,0.00644820065758132,0.0162759730802864,0.015898154658921,0.0289867978208268,0.0314370314380966,0.0418007852980889,0.0482677021935045,0.0489066311978976,0.0523568691078771,0.0816146605494745,0.0707540311387374,0.0746402097852144,0.0438187695286659,0.0604341570580624,0.0266355054659619,0.0295163821402729,-0.0015277783008647,-0.00110057377093549,-0.0132588375292019,0.0115101204079362,0.0113330523143802,0.0134452501768412,0.0194000679852087,0.0133371981374384,0.0150969705507749,0.00873866031343478,0.0111459039132908,0.013844604632035,0.0121138643133815,0.00858504507263833,0.0237279306639457,0.0183264004597176,0.0251781326058024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|gostat_on_MCL_coexpression=
}}

Latest revision as of 14:41, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:13687627..13687647,+p@chr10:13687627..13687647
+
Mm9::chr10:39089366..39089401,-p@chr10:39089366..39089401
-
Mm9::chr10:43717233..43717248,-p@chr10:43717233..43717248
-
Mm9::chr10:59814599..59814619,-p@chr10:59814599..59814619
-
Mm9::chr10:96079632..96079649,+p1@Btg1
Mm9::chr11:100710941..100710952,+p@chr11:100710941..100710952
+
Mm9::chr11:103127512..103127518,+p@chr11:103127512..103127518
+
Mm9::chr11:11586708..11586739,-p@chr11:11586708..11586739
-
Mm9::chr11:20991300..20991342,+p1@Peli1
Mm9::chr11:3232256..3232279,-p@chr11:3232256..3232279
-
Mm9::chr11:54950493..54950521,+p1@ENSMUST00000155883
p1@uc007iyy.1
Mm9::chr11:96328571..96328590,+p@chr11:96328571..96328590
+
Mm9::chr11:97856364..97856372,+p@chr11:97856364..97856372
+
Mm9::chr12:114099283..114099297,+p@chr12:114099283..114099297
+
Mm9::chr12:77187850..77187865,+p@chr12:77187850..77187865
+
Mm9::chr12:81892166..81892183,-p@chr12:81892166..81892183
-
Mm9::chr13:112597968..112597986,+p@chr13:112597968..112597986
+
Mm9::chr13:30878265..30878281,+p@chr13:30878265..30878281
+
Mm9::chr13:51895601..51895614,+p@chr13:51895601..51895614
+
Mm9::chr14:122314996..122315015,-p2@Gpr18
Mm9::chr15:100429398..100429446,+p@chr15:100429398..100429446
+
Mm9::chr15:25773040..25773100,+p1@Fam134b
Mm9::chr15:96468616..96468630,-p@chr15:96468616..96468630
-
Mm9::chr15:96468921..96468943,+p@chr15:96468921..96468943
+
Mm9::chr15:96469102..96469106,+p@chr15:96469102..96469106
+
Mm9::chr16:52034044..52034050,+p@chr16:52034044..52034050
+
Mm9::chr17:15843076..15843097,-p@chr17:15843076..15843097
-
Mm9::chr17:21610807..21610830,+p@chr17:21610807..21610830
+
Mm9::chr17:51953197..51953208,-p@chr17:51953197..51953208
-
Mm9::chr17:52043530..52043547,+p@chr17:52043530..52043547
+
Mm9::chr17:52301975..52302003,-p@chr17:52301975..52302003
-
Mm9::chr17:66303462..66303475,+p@chr17:66303462..66303475
+
Mm9::chr17:66451039..66451054,+p@chr17:66451039..66451054
+
Mm9::chr17:66451347..66451358,-p3@Ndufv2
Mm9::chr17:71201572..71201601,-p10@Tgif1
Mm9::chr17:8118736..8118743,+p4@Tagap
Mm9::chr17:8118822..8118836,+p3@Tagap
Mm9::chr18:14841821..14841840,-p2@Ss18
Mm9::chr18:35092238..35092262,-p@chr18:35092238..35092262
-
Mm9::chr18:5593880..5593898,+p13@Zeb1
Mm9::chr18:5593925..5593940,-p@chr18:5593925..5593940
-
Mm9::chr18:80806450..80806462,-p@chr18:80806450..80806462
-
Mm9::chr18:80904011..80904025,+p@chr18:80904011..80904025
+
Mm9::chr19:10904387..10904392,-p3@Cd6
Mm9::chr19:11560208..11560218,-p@chr19:11560208..11560218
-
Mm9::chr19:11560378..11560394,+p@chr19:11560378..11560394
+
Mm9::chr19:11560398..11560431,+p@chr19:11560398..11560431
+
Mm9::chr19:24551223..24551242,+p@chr19:24551223..24551242
+
Mm9::chr19:24551245..24551256,+p@chr19:24551245..24551256
+
Mm9::chr19:32787236..32787250,-p3@Atad1
Mm9::chr1:156945323..156945361,+p@chr1:156945323..156945361
+
Mm9::chr1:161977865..161977879,-p@chr1:161977865..161977879
-
Mm9::chr1:182260601..182260624,+p2@Itpkb
Mm9::chr1:182260626..182260667,+p1@Itpkb
Mm9::chr1:44158481..44158486,+p@chr1:44158481..44158486
+
Mm9::chr1:61031216..61031241,-p@chr1:61031216..61031241
-
Mm9::chr1:64579145..64579168,+p6@Creb1
Mm9::chr2:11575215..11575225,+p@chr2:11575215..11575225
+
Mm9::chr2:127163290..127163293,+p@chr2:127163290..127163293
+
Mm9::chr2:156947705..156947713,-p@chr2:156947705..156947713
-
Mm9::chr2:181428375..181428406,+p@chr2:181428375..181428406
+
Mm9::chr2:18873786..18873822,-p@chr2:18873786..18873822
-
Mm9::chr2:34817271..34817308,-p4@Traf1
Mm9::chr2:34817322..34817338,-p6@Traf1
Mm9::chr2:34817473..34817489,-p3@Traf1
Mm9::chr2:34819233..34819242,+p@chr2:34819233..34819242
+
Mm9::chr2:34819264..34819271,-p@chr2:34819264..34819271
-
Mm9::chr2:73290881..73290891,+p@chr2:73290881..73290891
+
Mm9::chr2:91076997..91077012,-p4@Ddb2
Mm9::chr3:101091469..101091477,-p@chr3:101091469..101091477
-
Mm9::chr3:101091805..101091816,-p2@Cd2
Mm9::chr3:101094662..101094677,-p@chr3:101094662..101094677
-
Mm9::chr3:106588396..106588407,+p@chr3:106588396..106588407
+
Mm9::chr3:106591486..106591497,-p@chr3:106591486..106591497
-
Mm9::chr3:126299326..126299337,+p@chr3:126299326..126299337
+
Mm9::chr3:137806886..137806901,+p5@Rg9mtd2
Mm9::chr3:60407657..60407673,+p@chr3:60407657..60407673
+
Mm9::chr4:102241701..102241708,-p@chr4:102241701..102241708
-
Mm9::chr4:102241713..102241741,-p@chr4:102241713..102241741
-
Mm9::chr4:102241756..102241763,-p@chr4:102241756..102241763
-
Mm9::chr4:129249813..129249831,+p@chr4:129249813..129249831
+
Mm9::chr4:129252530..129252541,-p@chr4:129252530..129252541
-
Mm9::chr4:129497159..129497177,-p@chr4:129497159..129497177
-
Mm9::chr4:133307533..133307544,-p@chr4:133307533..133307544
-
Mm9::chr4:15885562..15885594,-p@chr4:15885562..15885594
-
Mm9::chr4:32326398..32326418,+p@chr4:32326398..32326418
+
Mm9::chr4:32326424..32326445,+p@chr4:32326424..32326445
+
Mm9::chr4:63048107..63048117,-p@chr4:63048107..63048117
-
Mm9::chr5:123440413..123440416,-p@chr5:123440413..123440416
-
Mm9::chr5:123440767..123440778,+p@chr5:123440767..123440778
+
Mm9::chr5:149211592..149211605,+p@chr5:149211592..149211605
+
Mm9::chr5:149211722..149211725,+p@chr5:149211722..149211725
+
Mm9::chr6:106744586..106744610,-p@chr6:106744586..106744610
-
Mm9::chr6:114871796..114871855,-p1@Vgll4
Mm9::chr6:117857191..117857202,+p13@Hnrnpf
Mm9::chr6:125215364..125215372,-p@chr6:125215364..125215372
-
Mm9::chr6:129131940..129131951,+p@chr6:129131940..129131951
+
Mm9::chr6:129132851..129132862,-p@chr6:129132851..129132862
-
Mm9::chr6:41063367..41063378,+p2@uc009bnw.1
Mm9::chr6:48651957..48651962,-p@chr6:48651957..48651962
-
Mm9::chr6:48658173..48658202,-p2@Gimap6
Mm9::chr6:48658305..48658331,+p@chr6:48658305..48658331
+
Mm9::chr6:48658339..48658350,+p@chr6:48658339..48658350
+
Mm9::chr6:48675780..48675792,+p@chr6:48675780..48675792
+
Mm9::chr6:48687363..48687393,+p@chr6:48687363..48687393
+
Mm9::chr6:48688904..48688912,-p@chr6:48688904..48688912
-
Mm9::chr6:48720743..48720761,-p5@Gimap3
Mm9::chr6:82602619..82602640,+p@chr6:82602619..82602640
+
Mm9::chr6:86476638..86476713,+p1@ENSMUST00000125431
p1@uc009csd.1
Mm9::chr6:99045597..99045607,-p@chr6:99045597..99045607
-
Mm9::chr6:99045714..99045725,+p@chr6:99045714..99045725
+
Mm9::chr6:99215016..99215036,+p@chr6:99215016..99215036
+
Mm9::chr7:104100352..104100391,-p1@ENSMUST00000137923
p1@uc009iiv.1
Mm9::chr7:132695822..132695825,+p4@Il4ra
Mm9::chr7:132751140..132751183,+p@chr7:132751140..132751183
+
Mm9::chr7:135519623..135519633,-p@chr7:135519623..135519633
-
Mm9::chr7:35173623..35173690,+p1@ENSMUST00000145961
Mm9::chr7:75431019..75431039,+p@chr7:75431019..75431039
+
Mm9::chr8:124430603..124430608,+p@chr8:124430603..124430608
+
Mm9::chr8:14961901..14961913,+p@chr8:14961901..14961913
+
Mm9::chr8:73134598..73134617,+p@chr8:73134598..73134617
+
Mm9::chr8:87502066..87502070,+p@chr8:87502066..87502070
+
Mm9::chr9:108954497..108954507,+p@chr9:108954497..108954507
+
Mm9::chr9:21171867..21171886,-p@chr9:21171867..21171886
-
Mm9::chr9:62191079..62191117,-p@chr9:62191079..62191117
-
Mm9::chr9:7871976..7871987,+p@chr9:7871976..7871987
+
Mm9::chr9:7871994..7872010,+p@chr9:7871994..7872010
+
Mm9::chrX:50266652..50266675,+p@chrX:50266652..50266675
+
Mm9::chrX:98469284..98469298,-p@chrX:98469284..98469298
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
lymphoid lineage restricted progenitor cell4.89e-3212
mature alpha-beta T cell1.21e-299
alpha-beta T cell1.21e-299
immature T cell1.21e-299
mature T cell1.21e-299
immature alpha-beta T cell1.21e-299
lymphocyte2.09e-2913
common lymphoid progenitor2.09e-2913
T cell5.58e-2911
pro-T cell5.58e-2911
CD4-positive, alpha-beta T cell1.58e-268
nucleate cell1.75e-2316
hematopoietic lineage restricted progenitor cell2.15e-2325
hematopoietic cell4.53e-2332
hematopoietic oligopotent progenitor cell4.53e-2332
hematopoietic stem cell4.53e-2332
angioblastic mesenchymal cell4.53e-2332
hematopoietic multipotent progenitor cell4.53e-2332
leukocyte5.68e-2217
nongranular leukocyte5.68e-2217
thymocyte3.63e-206
double negative thymocyte3.63e-206
naive T cell3.63e-206
double-positive, alpha-beta thymocyte3.63e-206
CD4-positive, alpha-beta thymocyte3.63e-206
naive thymus-derived CD4-positive, alpha-beta T cell3.63e-206
DN4 thymocyte3.63e-206
DN1 thymic pro-T cell3.63e-206
DN2 thymocyte3.63e-206
DN3 thymocyte3.63e-206
immature single positive thymocyte3.63e-206
early T lineage precursor3.63e-206
mature CD4 single-positive thymocyte3.63e-206
resting double-positive thymocyte3.63e-206
double-positive blast3.63e-206
CD69-positive double-positive thymocyte3.63e-206
CD69-positive, CD4-positive single-positive thymocyte3.63e-206
CD4-positive, CD8-intermediate double-positive thymocyte3.63e-206
CD24-positive, CD4 single-positive thymocyte3.63e-206
connective tissue cell4.54e-1746
mesenchymal cell4.54e-1746
motile cell5.25e-1454
stem cell2.56e-0997
somatic stem cell7.28e-0791
multi fate stem cell7.28e-0791

Uber Anatomy
Ontology termp-valuen
thymus9.03e-2423
neck9.03e-2423
respiratory system epithelium9.03e-2423
hemolymphoid system gland9.03e-2423
pharyngeal epithelium9.03e-2423
thymic region9.03e-2423
pharyngeal gland9.03e-2423
entire pharyngeal arch endoderm9.03e-2423
thymus primordium9.03e-2423
early pharyngeal endoderm9.03e-2423
pharynx1.16e-2224
gland of gut1.16e-2224
upper respiratory tract1.16e-2224
chordate pharynx1.16e-2224
pharyngeal arch system1.16e-2224
pharyngeal region of foregut1.16e-2224
segment of respiratory tract7.92e-2027
hemopoietic organ2.90e-1829
immune organ2.90e-1829
hemolymphoid system1.75e-1748
immune system1.75e-1748
connective tissue4.54e-1746
mixed endoderm/mesoderm-derived structure6.03e-1735
hematopoietic system1.12e-1645
blood island1.12e-1645
organ segment1.20e-1435
craniocervical region3.68e-1436
respiratory tract4.35e-1241
respiratory system9.85e-1242
anterior region of body2.15e-1143
gut epithelium1.13e-0955
endocrine gland1.29e-0860
lateral plate mesoderm5.67e-0887
gland1.01e-0765
unilaminar epithelium1.46e-0766
endo-epithelium4.19e-0769


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.81982e-06
MA0004.11.71453
MA0006.10.334093
MA0007.10.434723
MA0009.11.05543
MA0014.13.0777e-06
MA0017.10.0135246
MA0019.10.0535945
MA0024.10.134582
MA0025.10.418447
MA0027.11.31999
MA0028.10.123843
MA0029.10.527181
MA0030.13.29317
MA0031.11.95713
MA0038.10.13757
MA0040.10.71325
MA0041.10.354445
MA0042.10.30901
MA0043.10.260055
MA0046.10.200677
MA0048.10.0397208
MA0050.10.875934
MA0051.10.147897
MA0052.10.18688
MA0055.10.0884753
MA0056.10
MA0057.10.0555661
MA0058.11.92509
MA0059.11.24037
MA0060.10.0315716
MA0061.10.982974
MA0063.10
MA0066.10.0164241
MA0067.10.195365
MA0068.10.428224
MA0069.10.18718
MA0070.11.54519
MA0071.10.186938
MA0072.10.387942
MA0073.10.000981982
MA0074.10.477018
MA0076.10.0424119
MA0077.10.991259
MA0078.10.342136
MA0081.10.955838
MA0083.10.0746746
MA0084.11.09111
MA0087.10.81778
MA0088.10.0273715
MA0089.10
MA0090.10.0414326
MA0091.10.970709
MA0092.10.368248
MA0093.12.37151
MA0095.10
MA0098.10
MA0100.10.441017
MA0101.10.858902
MA0103.10.271814
MA0105.10.602905
MA0106.10.00568925
MA0107.11.20483
MA0108.20.169242
MA0109.10
MA0111.10.581254
MA0113.10.484526
MA0114.10.00396221
MA0115.10.0759986
MA0116.10.33321
MA0117.10.230349
MA0119.10.0220086
MA0122.10.534063
MA0124.10.957081
MA0125.10.398005
MA0130.10
MA0131.10.288054
MA0132.10
MA0133.10
MA0135.10.621648
MA0136.11.03825
MA0139.10.0947271
MA0140.10.440667
MA0141.10.0937155
MA0142.11.04064
MA0143.10.532302
MA0144.10.225876
MA0145.10.0119457
MA0146.10.000216054
MA0147.10.369962
MA0148.10.756872
MA0149.10.0522654
MA0062.20.442702
MA0035.20.455134
MA0039.20.000159948
MA0138.20.133868
MA0002.21.55102
MA0137.20.779557
MA0104.20.846156
MA0047.20.422731
MA0112.20.000272707
MA0065.20.00123121
MA0150.10.0540853
MA0151.10
MA0152.12.28775
MA0153.10.0958819
MA0154.10.196692
MA0155.10.025828
MA0156.10.71676
MA0157.11.27588
MA0158.10
MA0159.10.0356519
MA0160.10.0827646
MA0161.10
MA0162.10.0193306
MA0163.10.0212198
MA0164.10.771835
MA0080.21.44845
MA0018.21.40861
MA0099.20.264498
MA0079.24.66213e-05
MA0102.20.468654
MA0258.10.0745432
MA0259.10.231721
MA0442.10
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