FFCP PHASE1:Mm9::chr16:18876802..18876832,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15260 | |EntrezGene=15260 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |MCL_coexpression_id=22 | ||
|TSSclassifier=NA | |||
|UniProt=Q61666 | |UniProt=Q61666 | ||
|association_with_transcript=-10bp_to_NM_010435,uc007yoq.1,uc012acm.1_5end | |association_with_transcript=-10bp_to_NM_010435,uc007yoq.1,uc012acm.1_5end | ||
|cluster_id=chr16:18876802..18876832,+ | |||
|description=CAGE_peak_3_at_Hira_5end | |description=CAGE_peak_3_at_Hira_5end | ||
|id=chr16:18876802..18876832,+ | |id=chr16:18876802..18876832,+ | ||
|ontology_enrichment_celltype=CL:0000540!4.60e-14!33;CL:0000047!4.60e-14!33;CL:0000031!4.60e-14!33;CL:0000404!4.60e-14!33;CL:0000117!3.84e-10!23;CL:0000337!3.84e-10!23;CL:0000393!1.50e-09!39;CL:0000211!1.50e-09!39;CL:0002319!5.10e-08!43;CL:0000221!9.88e-08!44;CL:0000133!9.88e-08!44 | |ontology_enrichment_celltype=CL:0000540!4.60e-14!33;CL:0000047!4.60e-14!33;CL:0000031!4.60e-14!33;CL:0000404!4.60e-14!33;CL:0000117!3.84e-10!23;CL:0000337!3.84e-10!23;CL:0000393!1.50e-09!39;CL:0000211!1.50e-09!39;CL:0002319!5.10e-08!43;CL:0000221!9.88e-08!44;CL:0000133!9.88e-08!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.19e-14,33;CL:0000047,4.19e-14,33;CL:0000031,4.19e-14,33;CL:0000404,4.19e-14,33;CL:0000117,3.60e-10,23;CL:0000337,3.60e-10,23;CL:0000393,1.15e-09,39;CL:0000211,1.15e-09,39;CL:0002319,4.78e-08,43;CL:0000221,9.29e-08,44;CL:0000133,9.29e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.79e-15!71;UBERON:0003075!3.79e-15!71;UBERON:0007284!3.79e-15!71;UBERON:0001017!1.33e-14!73;UBERON:0005743!1.33e-14!73;UBERON:0000073!7.97e-14!75;UBERON:0001016!7.97e-14!75;UBERON:0003056!9.58e-13!49;UBERON:0004121!1.82e-12!102;UBERON:0000924!1.82e-12!102;UBERON:0006601!1.82e-12!102;UBERON:0001049!8.28e-12!52;UBERON:0005068!8.28e-12!52;UBERON:0006241!8.28e-12!52;UBERON:0007135!8.28e-12!52;UBERON:0002020!4.58e-11!34;UBERON:0002780!1.71e-10!39;UBERON:0001890!1.71e-10!39;UBERON:0006240!1.71e-10!39;UBERON:0003080!2.71e-10!40;UBERON:0000033!7.26e-10!63;UBERON:0000955!1.03e-08!50;UBERON:0006238!1.03e-08!50;UBERON:0000153!1.03e-08!94;UBERON:0002616!1.43e-08!49;UBERON:0002791!1.83e-08!29;UBERON:0003528!1.83e-08!29;UBERON:0001893!1.83e-08!29;UBERON:0007811!1.67e-07!86 | |ontology_enrichment_uberon=UBERON:0002346!3.79e-15!71;UBERON:0003075!3.79e-15!71;UBERON:0007284!3.79e-15!71;UBERON:0001017!1.33e-14!73;UBERON:0005743!1.33e-14!73;UBERON:0000073!7.97e-14!75;UBERON:0001016!7.97e-14!75;UBERON:0003056!9.58e-13!49;UBERON:0004121!1.82e-12!102;UBERON:0000924!1.82e-12!102;UBERON:0006601!1.82e-12!102;UBERON:0001049!8.28e-12!52;UBERON:0005068!8.28e-12!52;UBERON:0006241!8.28e-12!52;UBERON:0007135!8.28e-12!52;UBERON:0002020!4.58e-11!34;UBERON:0002780!1.71e-10!39;UBERON:0001890!1.71e-10!39;UBERON:0006240!1.71e-10!39;UBERON:0003080!2.71e-10!40;UBERON:0000033!7.26e-10!63;UBERON:0000955!1.03e-08!50;UBERON:0006238!1.03e-08!50;UBERON:0000153!1.03e-08!94;UBERON:0002616!1.43e-08!49;UBERON:0002791!1.83e-08!29;UBERON:0003528!1.83e-08!29;UBERON:0001893!1.83e-08!29;UBERON:0007811!1.67e-07!86 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,9.29e-16,64;UBERON:0003075,9.29e-16,64;UBERON:0007284,9.29e-16,64;UBERON:0001017,1.18e-14,73;UBERON:0001016,7.15e-14,75;UBERON:0003056,7.65e-13,49;UBERON:0010371,1.12e-12,73;UBERON:0004121,1.62e-12,95;UBERON:0000924,1.62e-12,95;UBERON:0006601,1.62e-12,95;UBERON:0001049,7.67e-12,52;UBERON:0005068,7.67e-12,52;UBERON:0006241,7.67e-12,52;UBERON:0007135,7.67e-12,52;UBERON:0002020,4.27e-11,34;UBERON:0000073,5.73e-11,54;UBERON:0002780,1.60e-10,39;UBERON:0001890,1.60e-10,39;UBERON:0006240,1.60e-10,39;UBERON:0010314,1.92e-10,92;UBERON:0003080,2.54e-10,40;UBERON:0000955,2.47e-09,47;UBERON:0006238,2.47e-09,47;UBERON:0002616,3.43e-09,46;UBERON:0003528,1.74e-08,29;UBERON:0002791,1.74e-08,29;UBERON:0001893,1.74e-08,29 | |||
|phase1_expression=4.32401887182944,0.697950815278722,2.27499619694768,1.20985684522732,3.50627010962443,0.33575854382378,0,2.32421982194837,1.12630977721333,0.234064526321993,0.68487187290202,0.717949430958028,2.56801094896809,2.01066925563694,3.66420737997229,3.03712901084739,6.29605690315332,2.5236973228659,2.74228867211478,2.54633791078818,2.38121212422995,0.992909512008853,1.82839852397255,0.799962113967033,0.45881856213434,1.14846392823004,2.15380998079537,0.646413698057667,0.570070258369122,0.252030129759931,1.77384408524244,5.08024538767705,2.46025915033828,0,0.577703239502549,1.99481574430191,2.85837098767317,2.09265815368454,0.7813353445238,0.523523743973798,1.76469446409304,1.36609096991689,1.45653105909346,1.6366586336825,1.82478476195126,1.10128051297009,2.34717403304412,1.52617609466313,1.09843091367236,1.55543919259427,1.81982348112971,1.43752564364972,2.51673909086605,2.90144856804538,4.03312558970957,1.28629718017973,1.14613375975503,0,9.71119012126069,12.6957835025288,9.50747105259269,2.03306719241479,1.77858959222228,0.899899717281399,0.988866362566974,0,0.898800331555214,0,8.39885859698669,8.10035629990144,9.25429829946081,6.85562362569129,4.63823935998388,9.92175473641128,9.4887016308054,9.19218786610021,1.10115880999389,2.80912143787413,2.61131106535614,9.10015385338338,8.78281378583133,9.89735404057844,2.23346399201105,3.93933827022176,3.20876320331301,5.59794312399969,8.54230084794618,8.38797506213853,1.36307147999731,1.96486056277642,4.92769630792852,0.860423876981386,0.679971333707751,1.07940638327563,0,0.448026887097336,1.26399978118577,1.1930122580464,1.81850203222008,2.82671659608272,1.83096445709685,0,0,0,1.5154372870785,1.26679932737549,2.02209778005913,1.1418387971906,1.8125651855302,1.33597925158342,3.29622120855658,5.48037860961854,2.7673859670727,3.16517545160507,2.11659672844269,1.38233250462643,3.21353458054686,0.86759614151947,3.5384422077995,1.94120219936891,2.87093973998512,4.363877278217,5.59175283654366,2.04946557908083,4.1889341362691,1.53274233125155,2.39630249011841,1.79970819298022,0.762421362438388,2.39665023047716,3.66000482254901,9.04711335212624,2.9550134432687,4.85859368927628,2.28566849015516,4.54275536589721,2.95334155165917,1.7416975885413,0.252722758433675,0.210441855886474,5.85541993332167,7.58676944630461,5.22180176435513,8.43946979880004,6.39543092022482,5.63700369253339,3.84177070694888,2.84573707812917,5.6047678162539,4.34943984385984,6.15828934573821,3.5071317188412,2.22437799380478,4.52727816478817,2.26360350048738,5.17489093728082,0.702213187313235,1.28673953557358,1.13665399758237,2.48550927042602,3.04883877975425,2.70093092191522,3.55117103377815,2.55793501271625,2.93107514486019,3.48800917125612,2.41446061259657,1.16765342367169,1.97471819896177,1.31333971263276,1.62137619091711,0.584799949701329,0.439100230582101,2.01309628140558,4.41608891984667,8.12946437796347,1.65209391491899,1.58670339998127,3.41261200856374,5.34144345279009,3.22168653305233,1.00841762311671,1.11189021922435,1.71203063501303,2.37264530772256,1.64698954724011,1.50801125280162,1.1937388322469,1.36474860983384,4.49409704327111,1.29682829924817,1.1948476395262,3.60369011810855,3.77020091612105,1.1270773567308,3.05476991767971,3.49114476901726,2.45475369616115,1.70738650235495,1.62371162777562,0.784993639206874,1.60416313098341,0.296452627087149,4.33797274861845,2.75182593158484,3.37293168577281,3.24576194221605,0.72353147925725,3.05551022137704,1.72617682470486,0.972811360650212,1.09824565275233,0,0.372140947668503,0.936113019343682,1.01031551178845,1.4351793081753,0.964887042726734,1.10851914099963,4.35830247072115,2.44447464663039,3.90413697282933,2.34690248288502,2.68010011906905,2.85652369063216,3.31727201358258,3.78324345854858,1.55025282754142,2.07291199254733,2.29408640602033,3.28101465545202,2.60368305446721,0,0,0.491764273019036,0.551873492609465,2.0871576698413,2.34423373184406,2.95082901678016,1.00988370881749,4.41711507182759,4.29482618726302,4.95473814785438,3.58453196928828,4.01037613348309,4.24614796183249,6.07216052512342,5.84511715822624,4.34816555741176,3.21321316421807,2.98074178937364,3.02711526234334,3.74640006513225,3.29940245945071,2.65490276679926,2.91336763385978,3.32555912661226,2.64047111658257,2.06711325016541,1.22974059177571,2.58428293168221,2.18120237686503,1.78248689192361,1.26414703174326,1.05418608574999,1.03135543248187,4.08527526904546,5.94201610303324,4.13947788104814,4.50107773566344,2.83744373827638,3.21063871683727,4.60737257685939,2.43571959291679,1.40803024838226,0.63549621259146,1.32317038832977,1.31909002353184,2.26050197374268,2.0506394475573,2.86493625607528,1.14898629821543,0.874442509889552,3.33765543618917,4.10090113914846,2.88941615148511,2.03713980106683,3.01389531207506,4.37421528707281,3.43167259809784,0.169978429993855,0.419854356970974,0.967399816630967,0,6.95939185878498,2.84647253977588,2.37611749807963,2.50905955217362,2.40198820120795,2.02296519577231,1.32245529160537,2.09404753587224,1.8146096260851,0.6213393130869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| |phase1_expression=4.32401887182944,0.697950815278722,2.27499619694768,1.20985684522732,3.50627010962443,0.33575854382378,0,2.32421982194837,1.12630977721333,0.234064526321993,0.68487187290202,0.717949430958028,2.56801094896809,2.01066925563694,3.66420737997229,3.03712901084739,6.29605690315332,2.5236973228659,2.74228867211478,2.54633791078818,2.38121212422995,0.992909512008853,1.82839852397255,0.799962113967033,0.45881856213434,1.14846392823004,2.15380998079537,0.646413698057667,0.570070258369122,0.252030129759931,1.77384408524244,5.08024538767705,2.46025915033828,0,0.577703239502549,1.99481574430191,2.85837098767317,2.09265815368454,0.7813353445238,0.523523743973798,1.76469446409304,1.36609096991689,1.45653105909346,1.6366586336825,1.82478476195126,1.10128051297009,2.34717403304412,1.52617609466313,1.09843091367236,1.55543919259427,1.81982348112971,1.43752564364972,2.51673909086605,2.90144856804538,4.03312558970957,1.28629718017973,1.14613375975503,0,9.71119012126069,12.6957835025288,9.50747105259269,2.03306719241479,1.77858959222228,0.899899717281399,0.988866362566974,0,0.898800331555214,0,8.39885859698669,8.10035629990144,9.25429829946081,6.85562362569129,4.63823935998388,9.92175473641128,9.4887016308054,9.19218786610021,1.10115880999389,2.80912143787413,2.61131106535614,9.10015385338338,8.78281378583133,9.89735404057844,2.23346399201105,3.93933827022176,3.20876320331301,5.59794312399969,8.54230084794618,8.38797506213853,1.36307147999731,1.96486056277642,4.92769630792852,0.860423876981386,0.679971333707751,1.07940638327563,0,0.448026887097336,1.26399978118577,1.1930122580464,1.81850203222008,2.82671659608272,1.83096445709685,0,0,0,1.5154372870785,1.26679932737549,2.02209778005913,1.1418387971906,1.8125651855302,1.33597925158342,3.29622120855658,5.48037860961854,2.7673859670727,3.16517545160507,2.11659672844269,1.38233250462643,3.21353458054686,0.86759614151947,3.5384422077995,1.94120219936891,2.87093973998512,4.363877278217,5.59175283654366,2.04946557908083,4.1889341362691,1.53274233125155,2.39630249011841,1.79970819298022,0.762421362438388,2.39665023047716,3.66000482254901,9.04711335212624,2.9550134432687,4.85859368927628,2.28566849015516,4.54275536589721,2.95334155165917,1.7416975885413,0.252722758433675,0.210441855886474,5.85541993332167,7.58676944630461,5.22180176435513,8.43946979880004,6.39543092022482,5.63700369253339,3.84177070694888,2.84573707812917,5.6047678162539,4.34943984385984,6.15828934573821,3.5071317188412,2.22437799380478,4.52727816478817,2.26360350048738,5.17489093728082,0.702213187313235,1.28673953557358,1.13665399758237,2.48550927042602,3.04883877975425,2.70093092191522,3.55117103377815,2.55793501271625,2.93107514486019,3.48800917125612,2.41446061259657,1.16765342367169,1.97471819896177,1.31333971263276,1.62137619091711,0.584799949701329,0.439100230582101,2.01309628140558,4.41608891984667,8.12946437796347,1.65209391491899,1.58670339998127,3.41261200856374,5.34144345279009,3.22168653305233,1.00841762311671,1.11189021922435,1.71203063501303,2.37264530772256,1.64698954724011,1.50801125280162,1.1937388322469,1.36474860983384,4.49409704327111,1.29682829924817,1.1948476395262,3.60369011810855,3.77020091612105,1.1270773567308,3.05476991767971,3.49114476901726,2.45475369616115,1.70738650235495,1.62371162777562,0.784993639206874,1.60416313098341,0.296452627087149,4.33797274861845,2.75182593158484,3.37293168577281,3.24576194221605,0.72353147925725,3.05551022137704,1.72617682470486,0.972811360650212,1.09824565275233,0,0.372140947668503,0.936113019343682,1.01031551178845,1.4351793081753,0.964887042726734,1.10851914099963,4.35830247072115,2.44447464663039,3.90413697282933,2.34690248288502,2.68010011906905,2.85652369063216,3.31727201358258,3.78324345854858,1.55025282754142,2.07291199254733,2.29408640602033,3.28101465545202,2.60368305446721,0,0,0.491764273019036,0.551873492609465,2.0871576698413,2.34423373184406,2.95082901678016,1.00988370881749,4.41711507182759,4.29482618726302,4.95473814785438,3.58453196928828,4.01037613348309,4.24614796183249,6.07216052512342,5.84511715822624,4.34816555741176,3.21321316421807,2.98074178937364,3.02711526234334,3.74640006513225,3.29940245945071,2.65490276679926,2.91336763385978,3.32555912661226,2.64047111658257,2.06711325016541,1.22974059177571,2.58428293168221,2.18120237686503,1.78248689192361,1.26414703174326,1.05418608574999,1.03135543248187,4.08527526904546,5.94201610303324,4.13947788104814,4.50107773566344,2.83744373827638,3.21063871683727,4.60737257685939,2.43571959291679,1.40803024838226,0.63549621259146,1.32317038832977,1.31909002353184,2.26050197374268,2.0506394475573,2.86493625607528,1.14898629821543,0.874442509889552,3.33765543618917,4.10090113914846,2.88941615148511,2.03713980106683,3.01389531207506,4.37421528707281,3.43167259809784,0.169978429993855,0.419854356970974,0.967399816630967,0,6.95939185878498,2.84647253977588,2.37611749807963,2.50905955217362,2.40198820120795,2.02296519577231,1.32245529160537,2.09404753587224,1.8146096260851,0.6213393130869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| ||
|short_description=p3@Hira | |short_description=p3@Hira | ||
}} | }} |
Latest revision as of 17:24, 1 October 2015
Short description: | p3@Hira |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hira_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -10bp_to_NM_010435, uc007yoq.1, uc012acm.1_5end |
EntrezGene: | Hira |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.19e-14 | 33 |
neuronal stem cell | 4.19e-14 | 33 |
neuroblast | 4.19e-14 | 33 |
electrically signaling cell | 4.19e-14 | 33 |
CNS neuron (sensu Vertebrata) | 3.60e-10 | 23 |
neuroblast (sensu Vertebrata) | 3.60e-10 | 23 |
electrically responsive cell | 1.15e-09 | 39 |
electrically active cell | 1.15e-09 | 39 |
neural cell | 4.78e-08 | 43 |
ectodermal cell | 9.29e-08 | 44 |
neurectodermal cell | 9.29e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 9.29e-16 | 64 |
neural plate | 9.29e-16 | 64 |
presumptive neural plate | 9.29e-16 | 64 |
central nervous system | 1.18e-14 | 73 |
nervous system | 7.15e-14 | 75 |
pre-chordal neural plate | 7.65e-13 | 49 |
ecto-epithelium | 1.12e-12 | 73 |
ectoderm-derived structure | 1.62e-12 | 95 |
ectoderm | 1.62e-12 | 95 |
presumptive ectoderm | 1.62e-12 | 95 |
neural tube | 7.67e-12 | 52 |
neural rod | 7.67e-12 | 52 |
future spinal cord | 7.67e-12 | 52 |
neural keel | 7.67e-12 | 52 |
gray matter | 4.27e-11 | 34 |
regional part of nervous system | 5.73e-11 | 54 |
regional part of forebrain | 1.60e-10 | 39 |
forebrain | 1.60e-10 | 39 |
future forebrain | 1.60e-10 | 39 |
structure with developmental contribution from neural crest | 1.92e-10 | 92 |
anterior neural tube | 2.54e-10 | 40 |
brain | 2.47e-09 | 47 |
future brain | 2.47e-09 | 47 |
regional part of brain | 3.43e-09 | 46 |
brain grey matter | 1.74e-08 | 29 |
regional part of telencephalon | 1.74e-08 | 29 |
telencephalon | 1.74e-08 | 29 |