FFCP PHASE1:Hg19::chr3:49059510..49059579,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:49059510..49059579,+
|short_description=p1@NDUFAF3
|description=CAGE_peak_1_at_NDUFAF3_5end
|association_with_transcript=0bp_to_ENST00000480392,ENST0000049...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25915 | |EntrezGene=25915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29918 | |HGNC=29918 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000480392,ENST00000496152_5end | |||
|cluster_id=chr3:49059510..49059579,+ | |||
|coexpression_cluster_id=C685 | |||
|description=CAGE_peak_1_at_NDUFAF3_5end | |||
|id=chr3:49059510..49059579,+ | |||
|ontology_enrichment_celltype=CL:0000183!5.15e-17!59;CL:0000187!1.83e-14!54;CL:0000680!1.31e-13!57;CL:0000056!1.31e-13!57;CL:0000355!1.31e-13!57;CL:0000192!1.37e-12!42;CL:0000514!1.37e-12!42;CL:0000393!1.67e-11!60;CL:0000211!1.67e-11!60;CL:0000220!6.33e-11!246;CL:0000222!7.78e-11!119;CL:0002321!2.17e-10!248;CL:0000055!3.54e-10!180;CL:0000359!7.49e-09!32;CL:1000449!5.25e-08!16 | |||
|ontology_enrichment_celltype_v019=CL:0000192;6.06e-09;43!CL:1000449;1.19e-08;15!CL:0000187;1.47e-08;55!CL:0000359;1.47e-08;32!CL:0002681;2.61e-07;12!CL:0002584;2.61e-07;12!CL:1000497;6.79e-07;17!CL:0002518;6.79e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,4.44e-14,55;CL:0000680,2.95e-13,58;CL:0000056,2.95e-13,58;CL:0000355,2.95e-13,58;CL:0000192,3.56e-12,43;CL:0000514,3.56e-12,43;CL:0000393,3.27e-11,61;CL:0000211,3.27e-11,61;CL:0000222,6.74e-11,121;CL:0002321,1.73e-10,250;CL:0000359,7.49e-09,32;CL:1000449,1.17e-08,15;CL:0002681,2.61e-07,12;CL:0002584,2.61e-07,12;CL:1000497,6.57e-07,17;CL:0002518,6.57e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000514;6.06e-09;43!CL:0000355;2.08e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!6.62e-19!238;UBERON:0009142!6.62e-19!238;UBERON:0005256!1.80e-17!143;UBERON:0000481!9.60e-17!347;UBERON:0004290!1.73e-16!70;UBERON:0000914!5.32e-16!83;UBERON:0002329!5.32e-16!83;UBERON:0003077!5.32e-16!83;UBERON:0003059!5.32e-16!83;UBERON:0007282!5.32e-16!83;UBERON:0009618!5.32e-16!83;UBERON:0007285!5.32e-16!83;UBERON:0002100!8.98e-16!216;UBERON:0000486!2.12e-15!82;UBERON:0001134!8.48e-15!61;UBERON:0002036!8.48e-15!61;UBERON:0003082!8.48e-15!61;UBERON:0000119!8.48e-14!312;UBERON:0002385!1.80e-13!63;UBERON:0001015!1.80e-13!63;UBERON:0000383!1.80e-13!63;UBERON:0000483!2.15e-13!309;UBERON:0000490!5.34e-12!138;UBERON:0003103!7.17e-11!69;UBERON:0000475!9.04e-11!365;UBERON:0003914!1.21e-10!118;UBERON:0000477!3.18e-09!286;UBERON:0006554!2.26e-08!44;UBERON:0004211!5.25e-08!16;UBERON:0001285!5.25e-08!16;UBERON:0007684!5.25e-08!16;UBERON:0003220!5.25e-08!16;UBERON:0004208!5.25e-08!16;UBERON:0000080!7.18e-08!18;UBERON:0002120!7.18e-08!18;UBERON:0004875!7.18e-08!18;UBERON:0005721!7.18e-08!18;UBERON:0005754!7.18e-08!18;UBERON:0007297!7.18e-08!18;UBERON:0000353!8.58e-08!17;UBERON:0001008!1.01e-07!45;UBERON:0004872!1.07e-07!84;UBERON:0004876!1.09e-07!20;UBERON:0002049!1.31e-07!79;UBERON:0007798!1.31e-07!79;UBERON:0006555!1.51e-07!17;UBERON:0005103!1.51e-07!17;UBERON:0000083!1.51e-07!17;UBERON:0009201!1.51e-07!17;UBERON:0004819!1.51e-07!17;UBERON:0006553!1.51e-07!17;UBERON:0003074!1.51e-07!17;UBERON:0003060!1.51e-07!17;UBERON:0002113!3.67e-07!27;UBERON:0003918!3.67e-07!27;UBERON:0005095!3.67e-07!27;UBERON:0007687!3.67e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.19e-08;15!UBERON:0004819;1.19e-08;15!UBERON:0001285;1.19e-08;15!UBERON:0007684;1.19e-08;15!UBERON:0000353;3.24e-08;15!UBERON:0002113;1.62e-07;24!UBERON:0011143;1.62e-07;24!UBERON:0006554;2.50e-07;30!UBERON:0001008;2.50e-07;30!UBERON:0001225;2.61e-07;12!UBERON:0008987;2.61e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.63e-19,78;UBERON:0003104,1.04e-16,160;UBERON:0009142,1.04e-16,160;UBERON:0002329,3.88e-16,71;UBERON:0003059,3.88e-16,71;UBERON:0007282,3.88e-16,71;UBERON:0004290,3.88e-16,71;UBERON:0009618,3.88e-16,71;UBERON:0007524,5.18e-16,73;UBERON:0003077,7.83e-16,72;UBERON:0007285,7.83e-16,72;UBERON:0000119,1.06e-15,309;UBERON:0002100,1.41e-15,199;UBERON:0000483,2.85e-15,306;UBERON:0000486,4.17e-15,83;UBERON:0001134,1.93e-14,62;UBERON:0002036,1.93e-14,62;UBERON:0003082,1.93e-14,62;UBERON:0005256,3.61e-14,122;UBERON:0000490,1.87e-13,148;UBERON:0002385,3.77e-13,64;UBERON:0001015,3.77e-13,64;UBERON:0000383,3.77e-13,64;UBERON:0003103,3.96e-11,68;UBERON:0003914,8.22e-11,117;UBERON:0006554,3.77e-09,47;UBERON:0004211,1.17e-08,15;UBERON:0009773,1.17e-08,15;UBERON:0001231,1.17e-08,15;UBERON:0001285,1.17e-08,15;UBERON:0007684,1.17e-08,15;UBERON:0004208,1.17e-08,15;UBERON:0001008,1.74e-08,48;UBERON:0000353,3.28e-08,15;UBERON:0006555,3.92e-08,16;UBERON:0004819,3.92e-08,16;UBERON:0002113,1.55e-07,26;UBERON:0003918,1.55e-07,26;UBERON:0011143,1.55e-07,26;UBERON:0005095,1.55e-07,26;UBERON:0007687,1.55e-07,26;UBERON:0004872,1.68e-07,83;UBERON:0002049,2.05e-07,78;UBERON:0007798,2.05e-07,78;UBERON:0001225,2.61e-07,12;UBERON:0008987,2.61e-07,12 | |||
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| ||
|short_description=p1@NDUFAF3 | |||
}} | }} |
Latest revision as of 15:41, 18 September 2015
Short description: | p1@NDUFAF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NDUFAF3_5end |
Coexpression cluster: | C685_Alveolar_Mesenchymal_Renal_Smooth_Hepatic_Fibroblast_Keratocytes |
Association with transcript: | 0bp_to_ENST00000480392, ENST00000496152_5end |
EntrezGene: | NDUFAF3 |
HGNC: | 29918 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 4.44e-14 | 55 |
muscle precursor cell | 2.95e-13 | 58 |
myoblast | 2.95e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.95e-13 | 58 |
smooth muscle cell | 3.56e-12 | 43 |
smooth muscle myoblast | 3.56e-12 | 43 |
electrically responsive cell | 3.27e-11 | 61 |
electrically active cell | 3.27e-11 | 61 |
mesodermal cell | 6.74e-11 | 121 |
embryonic cell | 1.73e-10 | 250 |
vascular associated smooth muscle cell | 7.49e-09 | 32 |
epithelial cell of nephron | 1.17e-08 | 15 |
kidney cortical cell | 2.61e-07 | 12 |
renal cortical epithelial cell | 2.61e-07 | 12 |
kidney cell | 6.57e-07 | 17 |
kidney epithelial cell | 6.57e-07 | 17 |