FFCP PHASE1:Hg19::chr4:109088089..109088101,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:109088089..109088101,-
|short_description=p11@LEF1
|description=CAGE_peak_11_at_LEF1_5end
|association_with_transcript=-136bp_to_ENST00000515500,NM_0011661...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt=D6RAB1,B7Z8E2,E9PDK3,Q659G9,Q9UJU2 | |UniProt=D6RAB1,B7Z8E2,E9PDK3,Q659G9,Q9UJU2 | ||
|association_with_transcript=-136bp_to_ENST00000515500,NM_001166119_5end | |||
|cluster_id=chr4:109088089..109088101,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_11_at_LEF1_5end | |||
|id=chr4:109088089..109088101,- | |||
|ontology_enrichment_celltype=CL:0000791!1.77e-20!18;CL:0000789!1.77e-20!18;CL:0002420!1.77e-20!18;CL:0002419!1.77e-20!18;CL:0000790!1.77e-20!18;CL:0000542!1.92e-20!53;CL:0000051!1.92e-20!53;CL:0000838!1.51e-19!52;CL:0000084!7.52e-19!25;CL:0000827!7.52e-19!25;CL:0000625!1.23e-14!11;CL:0000037!1.45e-09!172;CL:0000566!1.45e-09!172;CL:0000738!1.63e-09!140;CL:0002087!1.78e-09!119;CL:0000624!4.67e-09!6;CL:0000988!1.17e-08!182;CL:0002032!3.15e-08!165;CL:0000837!3.15e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.44e-46;18!CL:0000789;6.44e-46;18!CL:0002419;6.44e-46;18!CL:0000084;2.21e-44;25!CL:0000625;1.10e-31;11!CL:0000624;8.90e-19;6!CL:0000542;3.21e-18;53!CL:0000898;2.28e-10;3!CL:0000226;2.46e-09;3!CL:0000842;2.46e-09;3!CL:0000623;6.88e-09;3!CL:0000815;9.61e-08;2!CL:0000792;9.61e-08;2!CL:0002677;9.61e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,8.94e-46,18;CL:0000789,8.94e-46,18;CL:0002420,8.94e-46,18;CL:0002419,8.94e-46,18;CL:0000790,8.94e-46,18;CL:0000084,3.02e-44,25;CL:0000827,3.02e-44,25;CL:0000542,1.06e-33,53;CL:0000051,1.06e-33,53;CL:0000838,7.84e-32,52;CL:0000625,1.42e-31,11;CL:0000624,9.76e-19,6;CL:0002087,3.44e-16,115;CL:0000738,8.96e-16,136;CL:0000037,4.73e-13,168;CL:0000988,6.05e-12,177;CL:0002031,1.00e-10,120;CL:0000898,2.36e-10,3;CL:0002032,3.38e-10,161;CL:0000837,3.38e-10,161;CL:0000226,2.29e-09,3;CL:0000842,2.29e-09,3;CL:0000623,7.18e-09,3;CL:0000825,7.18e-09,3;CL:0000815,9.77e-08,2;CL:0000792,9.77e-08,2;CL:0002677,9.77e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000790;6.44e-46;18!CL:0000051;3.21e-18;53 | |||
|ontology_enrichment_disease=DOID:1036!9.77e-07!8 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.21e-11!115;UBERON:0000178!5.99e-09!15;UBERON:0000179!5.99e-09!15;UBERON:0000463!5.99e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.72e-17;15!UBERON:0000179;4.72e-17;15!UBERON:0000463;4.72e-17;15!UBERON:0002390;2.16e-09;32!UBERON:0002193;2.22e-07;42!UBERON:0002370;2.53e-07;2!UBERON:0005058;2.53e-07;2!UBERON:0009113;2.53e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.24e-17,15;UBERON:0000179,4.24e-17,15;UBERON:0000463,4.24e-17,15;UBERON:0002370,1.52e-07,4;UBERON:0005058,1.52e-07,4;UBERON:0009113,1.52e-07,4;UBERON:0003295,1.52e-07,4;UBERON:0005562,1.52e-07,4 | |||
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| ||
|short_description=p11@LEF1 | |||
}} | }} |
Latest revision as of 14:54, 24 September 2015
Short description: | p11@LEF1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_LEF1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -136bp_to_ENST00000515500, NM_001166119_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | D6RAB1B7Z8E2E9PDK3Q659G9Q9UJU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 8.94e-46 | 18 |
alpha-beta T cell | 8.94e-46 | 18 |
immature T cell | 8.94e-46 | 18 |
mature T cell | 8.94e-46 | 18 |
immature alpha-beta T cell | 8.94e-46 | 18 |
T cell | 3.02e-44 | 25 |
pro-T cell | 3.02e-44 | 25 |
lymphocyte | 1.06e-33 | 53 |
common lymphoid progenitor | 1.06e-33 | 53 |
lymphoid lineage restricted progenitor cell | 7.84e-32 | 52 |
CD8-positive, alpha-beta T cell | 1.42e-31 | 11 |
CD4-positive, alpha-beta T cell | 9.76e-19 | 6 |
nongranular leukocyte | 3.44e-16 | 115 |
leukocyte | 8.96e-16 | 136 |
hematopoietic stem cell | 4.73e-13 | 168 |
hematopoietic cell | 6.05e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 1.00e-10 | 120 |
naive T cell | 2.36e-10 | 3 |
hematopoietic oligopotent progenitor cell | 3.38e-10 | 161 |
hematopoietic multipotent progenitor cell | 3.38e-10 | 161 |
single nucleate cell | 2.29e-09 | 3 |
mononuclear cell | 2.29e-09 | 3 |
natural killer cell | 7.18e-09 | 3 |
pro-NK cell | 7.18e-09 | 3 |
regulatory T cell | 9.77e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 9.77e-08 | 2 |
naive regulatory T cell | 9.77e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 4.24e-17 | 15 |
haemolymphatic fluid | 4.24e-17 | 15 |
organism substance | 4.24e-17 | 15 |
thymus | 1.52e-07 | 4 |
hemolymphoid system gland | 1.52e-07 | 4 |
thymic region | 1.52e-07 | 4 |
pharyngeal gland | 1.52e-07 | 4 |
thymus primordium | 1.52e-07 | 4 |