FFCP PHASE1:Hg19::chr4:109089457..109089474,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:109089457..109089474,-
|short_description=p29@LEF1
|description=CAGE_peak_29_at_LEF1_5end
|association_with_transcript=103bp_to_ENST00000265165,uc003hyt.1,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51176 | |EntrezGene=51176 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6551 | |HGNC=6551 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UJU2 | |UniProt=Q9UJU2 | ||
|association_with_transcript=103bp_to_ENST00000265165,uc003hyt.1,uc003hyu.1,uc003hyv.1,uc010imb.1_5end | |||
|cluster_id=chr4:109089457..109089474,- | |||
|coexpression_cluster_id=C1225 | |||
|description=CAGE_peak_29_at_LEF1_5end | |||
|id=chr4:109089457..109089474,- | |||
|ontology_enrichment_celltype=CL:0000542!5.57e-17!53;CL:0000051!5.57e-17!53;CL:0000084!5.58e-17!25;CL:0000827!5.58e-17!25;CL:0000838!7.00e-16!52;CL:0000791!1.52e-15!18;CL:0000789!1.52e-15!18;CL:0002420!1.52e-15!18;CL:0002419!1.52e-15!18;CL:0000790!1.52e-15!18;CL:0000625!2.17e-09!11;CL:0000624!3.50e-09!6;CL:0000037!1.27e-07!172;CL:0000566!1.27e-07!172;CL:0000842!1.82e-07!3;CL:0000623!3.91e-07!3;CL:0000825!3.91e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.58e-23;25!CL:0000791;3.11e-11;18!CL:0000789;3.11e-11;18!CL:0002419;3.11e-11;18!CL:0000625;1.08e-10;11!CL:0000815;1.75e-07;2!CL:0000792;1.75e-07;2!CL:0002677;1.75e-07;2!CL:0000542;5.02e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.38e-23,25;CL:0000827,1.38e-23,25;CL:0000791,2.44e-11,18;CL:0000789,2.44e-11,18;CL:0002420,2.44e-11,18;CL:0002419,2.44e-11,18;CL:0000790,2.44e-11,18;CL:0000838,4.55e-11,52;CL:0000542,7.54e-11,53;CL:0000051,7.54e-11,53;CL:0000625,9.44e-11,11;CL:0000815,1.28e-07,2;CL:0000792,1.28e-07,2;CL:0002677,1.28e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.11e-11;18!CL:0000051;5.02e-07;53 | |||
|ontology_enrichment_disease=DOID:1036!1.00e-12!8;DOID:2531!7.37e-07!51;DOID:0060083!7.37e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:1036;4.28e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,4.41e-07,8 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.56e-26;2!UBERON:0005058;1.56e-26;2!UBERON:0009113;1.56e-26;2!UBERON:0004177;3.28e-11;5!UBERON:0005057;3.28e-11;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.59e-14,4;UBERON:0005058,8.59e-14,4;UBERON:0009113,8.59e-14,4;UBERON:0003295,8.59e-14,4;UBERON:0005562,8.59e-14,4;UBERON:0003351,1.68e-09,6;UBERON:0004177,2.88e-08,7;UBERON:0005057,2.88e-08,7 | |||
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| ||
|short_description=p29@LEF1 | |||
}} | }} |
Latest revision as of 15:08, 24 September 2015
Short description: | p29@LEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_29_at_LEF1_5end |
Coexpression cluster: | C1225_thymus_acute_CD4_CD8_Hodgkin_Peripheral_lymph |
Association with transcript: | 103bp_to_ENST00000265165, uc003hyt.1, uc003hyu.1, uc003hyv.1, uc010imb.1_5end |
EntrezGene: | LEF1 |
HGNC: | 6551 |
UniProt: | Q9UJU2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.38e-23 | 25 |
pro-T cell | 1.38e-23 | 25 |
mature alpha-beta T cell | 2.44e-11 | 18 |
alpha-beta T cell | 2.44e-11 | 18 |
immature T cell | 2.44e-11 | 18 |
mature T cell | 2.44e-11 | 18 |
immature alpha-beta T cell | 2.44e-11 | 18 |
lymphoid lineage restricted progenitor cell | 4.55e-11 | 52 |
lymphocyte | 7.54e-11 | 53 |
common lymphoid progenitor | 7.54e-11 | 53 |
CD8-positive, alpha-beta T cell | 9.44e-11 | 11 |
regulatory T cell | 1.28e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.28e-07 | 2 |
naive regulatory T cell | 1.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.59e-14 | 4 |
hemolymphoid system gland | 8.59e-14 | 4 |
thymic region | 8.59e-14 | 4 |
pharyngeal gland | 8.59e-14 | 4 |
thymus primordium | 8.59e-14 | 4 |
pharyngeal epithelium | 1.68e-09 | 6 |
hemopoietic organ | 2.88e-08 | 7 |
immune organ | 2.88e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 4.41e-07 | 8 |