FFCP PHASE1:Hg19::chr7:766320..766358,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54919 | |EntrezGene=54919 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26013 | |HGNC=26013 | ||
|TSSclassifier=strong | |||
|UniProt=Q86Y56,B3KPE2 | |UniProt=Q86Y56,B3KPE2 | ||
|association_with_transcript=0bp_to_ENST00000297440,ENST00000313147,NM_017802,uc003siz.2,uc010krz.1_5end | |association_with_transcript=0bp_to_ENST00000297440,ENST00000313147,NM_017802,uc003siz.2,uc010krz.1_5end | ||
|cluster_id=chr7:766320..766358,+ | |||
|description=CAGE_peak_1_at_HEATR2_5end | |description=CAGE_peak_1_at_HEATR2_5end | ||
|id=chr7:766320..766358,+ | |id=chr7:766320..766358,+ | ||
Latest revision as of 14:10, 19 September 2015
| Short description: | p1@HEATR2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_HEATR2_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000297440, ENST00000313147, NM_017802, uc003siz.2, uc010krz.1_5end |
| EntrezGene: | HEATR2 |
| HGNC: | 26013 |
| UniProt: | Q86Y56B3KPE2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@HEATR2 |
|---|
0
25
50
75
100
125
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 2.04e-31 | 253 |
| embryonic cell | 9.69e-16 | 250 |
| squamous epithelial cell | 1.24e-12 | 63 |
| lining cell | 6.97e-10 | 58 |
| barrier cell | 6.97e-10 | 58 |
| meso-epithelial cell | 2.21e-09 | 45 |
| endothelial cell | 2.51e-08 | 36 |
| epithelial cell of nephron | 3.12e-08 | 15 |
| mesodermal cell | 3.97e-08 | 121 |
| kidney cell | 6.06e-08 | 17 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| trunk region element | 8.73e-14 | 101 |
| trunk | 4.10e-11 | 199 |
| kidney | 4.40e-09 | 26 |
| kidney mesenchyme | 4.40e-09 | 26 |
| upper urinary tract | 4.40e-09 | 26 |
| kidney rudiment | 4.40e-09 | 26 |
| kidney field | 4.40e-09 | 26 |
| subdivision of trunk | 5.61e-09 | 112 |
| abdomen element | 2.69e-08 | 54 |
| abdominal segment element | 2.69e-08 | 54 |
Showing 1 to 10 of 31 entries
| Ontology term | p-value | n |
|---|---|---|
| cancer | 3.57e-25 | 235 |
| disease of cellular proliferation | 1.26e-24 | 239 |
| cell type cancer | 8.48e-20 | 143 |
| carcinoma | 1.30e-15 | 106 |
| organ system cancer | 2.87e-07 | 137 |
Showing 1 to 5 of 5 entries
