FFCP PHASE1:Hg19::chr1:153581503..153581520,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset= | |DHSsupport=supported | ||
|DPIdataset=robust | |||
|EntrezGene=140576 | |EntrezGene=140576 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=20441 | |HGNC=20441 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=Q96FQ6 | |UniProt=Q96FQ6 | ||
|association_with_transcript=-22bp_to_uc001fcc.2_5end | |association_with_transcript=-22bp_to_uc001fcc.2_5end | ||
|cluster_id=chr1:153581503..153581520,- | |||
|description=CAGE_peak_5_at_S100A16_5end | |description=CAGE_peak_5_at_S100A16_5end | ||
|id=chr1:153581503..153581520,- | |id=chr1:153581503..153581520,- | ||
Latest revision as of 06:24, 17 September 2015
| Short description: | p5@S100A16 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_5_at_S100A16_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -22bp_to_uc001fcc.2_5end |
| EntrezGene: | S100A16 |
| HGNC: | 20441 |
| UniProt: | Q96FQ6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p5@S100A16 |
|---|
0
50
100
150
200
250
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mesodermal cell | 3.22e-35 | 121 |
| embryonic cell | 2.04e-33 | 250 |
| epithelial cell | 4.27e-28 | 253 |
| lining cell | 1.11e-18 | 58 |
| barrier cell | 1.11e-18 | 58 |
| meso-epithelial cell | 1.05e-17 | 45 |
| endothelial cell | 6.62e-16 | 36 |
| endothelial cell of vascular tree | 4.51e-14 | 24 |
| muscle precursor cell | 1.67e-13 | 58 |
| myoblast | 1.67e-13 | 58 |
Showing 1 to 10 of 28 entries
| Ontology term | p-value | n |
|---|---|---|
| epithelial tube | 1.23e-26 | 117 |
| vasculature | 5.54e-24 | 78 |
| vascular system | 5.54e-24 | 78 |
| vessel | 6.36e-24 | 68 |
| trunk | 6.50e-23 | 199 |
| unilaminar epithelium | 1.69e-21 | 148 |
| splanchnic layer of lateral plate mesoderm | 3.90e-21 | 83 |
| epithelial tube open at both ends | 1.21e-20 | 59 |
| blood vessel | 1.21e-20 | 59 |
| blood vasculature | 1.21e-20 | 59 |
Showing 1 to 10 of 69 entries
