FFCP PHASE1:Hg19::chr6:17706378..17706411,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:17706378..17706411,+
|short_description=p3@NUP153
|description=CAGE_peak_3_at_NUP153_5end
|association_with_transcript=-76bp_to_BC035502_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9972 | |EntrezGene=9972 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=8062 | |HGNC=8062 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-76bp_to_BC035502_5end | |||
|cluster_id=chr6:17706378..17706411,+ | |||
|description=CAGE_peak_3_at_NUP153_5end | |||
|id=chr6:17706378..17706411,+ | |||
|ontology_enrichment_celltype=CL:0000012!4.10e-34!682;CL:0000548!6.97e-32!679;CL:0000004!6.97e-32!679;CL:0000255!6.97e-32!679;CL:0000003!2.34e-31!722;CL:0000144!1.07e-29!625;CL:0002371!1.13e-27!591;CL:0000063!1.26e-25!578;CL:0000988!7.87e-18!182;CL:0000542!2.53e-16!53;CL:0000051!2.53e-16!53;CL:0000037!4.92e-16!172;CL:0000566!4.92e-16!172;CL:0000838!5.57e-16!52;CL:0002032!1.26e-14!165;CL:0000837!1.26e-14!165;CL:0000115!4.76e-12!35;CL:0002139!1.68e-11!24;CL:0000945!2.60e-11!24;CL:0000826!2.60e-11!24;CL:0000738!2.89e-11!140;CL:0000213!3.25e-11!57;CL:0000215!3.25e-11!57;CL:0000048!8.50e-11!430;CL:0002078!8.91e-11!44;CL:0002087!1.07e-10!119;CL:0000723!1.39e-10!436;CL:0002031!1.88e-10!124;CL:0000034!2.47e-10!444;CL:0000222!6.56e-10!119;CL:0000071!1.79e-09!18;CL:0002546!1.79e-09!18;CL:0000134!2.06e-09!358;CL:0002320!2.22e-09!365;CL:0000076!3.93e-08!62;CL:0000219!1.68e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.38e-12;24!CL:0000945;1.83e-11;24!CL:0000115;5.51e-11;36!CL:0000542;1.39e-10;53!CL:0000071;9.61e-10;18!CL:0002078;7.31e-08;45!CL:0000213;4.35e-07;58!CL:0000215;4.35e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,4.47e-18,177;CL:0000037,9.39e-17,168;CL:0000542,1.87e-16,53;CL:0000051,1.87e-16,53;CL:0000838,4.20e-16,52;CL:0002032,2.70e-15,161;CL:0000837,2.70e-15,161;CL:0000115,1.01e-12,36;CL:0000213,4.88e-12,58;CL:0000215,4.88e-12,58;CL:0000738,6.12e-12,136;CL:0002139,9.43e-12,24;CL:0002087,1.16e-11,115;CL:0000945,1.47e-11,24;CL:0000826,1.47e-11,24;CL:0002078,2.00e-11,45;CL:0002031,2.99e-11,120;CL:0000222,3.13e-10,121;CL:0000071,1.13e-09,18;CL:0002546,1.13e-09,18;CL:0000048,2.15e-09,427;CL:0000723,2.82e-09,433;CL:0000034,5.18e-09,441;CL:0000076,1.53e-08,63;CL:0000134,4.21e-08,354;CL:0002320,5.25e-08,361 | |||
|ontology_enrichment_development_v019=CL:0000051;1.39e-10;53!CL:0002546;9.61e-10;18 | |||
|ontology_enrichment_disease=DOID:2531!1.60e-11!51;DOID:0060083!1.60e-11!51;DOID:1240!6.05e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:2531;8.14e-08;51!DOID:0060083;8.14e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,2.01e-11,51;DOID:0060083,2.01e-11,51;DOID:1240,8.69e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001986!1.79e-09!18;UBERON:0004638!1.79e-09!18;UBERON:0004852!1.79e-09!18;UBERON:0002384!1.81e-08!375;UBERON:0000487!5.20e-08!22;UBERON:0006914!5.05e-07!25;UBERON:0000055!5.72e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;9.61e-10;18!UBERON:0001986;9.61e-10;18!UBERON:0004852;9.61e-10;18!UBERON:0000487;3.81e-08;22!UBERON:0006914;4.98e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.13e-09,18;UBERON:0001986,1.13e-09,18;UBERON:0004852,1.13e-09,18;UBERON:0000487,3.57e-08,22;UBERON:0000055,1.28e-07,68;UBERON:0002049,2.67e-07,78;UBERON:0007798,2.67e-07,78;UBERON:0006914,3.40e-07,25;UBERON:0002384,3.48e-07,371;UBERON:0004535,4.20e-07,109 | |||
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| ||
|short_description=p3@NUP153 | |||
}} | }} |
Latest revision as of 00:54, 17 September 2015
Short description: | p3@NUP153 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NUP153_5end |
Coexpression cluster: | NA |
Association with transcript: | -76bp_to_BC035502_5end |
EntrezGene: | NUP153 |
HGNC: | 8062 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 4.47e-18 | 177 |
hematopoietic stem cell | 9.39e-17 | 168 |
lymphocyte | 1.87e-16 | 53 |
common lymphoid progenitor | 1.87e-16 | 53 |
lymphoid lineage restricted progenitor cell | 4.20e-16 | 52 |
hematopoietic oligopotent progenitor cell | 2.70e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.70e-15 | 161 |
endothelial cell | 1.01e-12 | 36 |
lining cell | 4.88e-12 | 58 |
barrier cell | 4.88e-12 | 58 |
leukocyte | 6.12e-12 | 136 |
endothelial cell of vascular tree | 9.43e-12 | 24 |
nongranular leukocyte | 1.16e-11 | 115 |
lymphocyte of B lineage | 1.47e-11 | 24 |
pro-B cell | 1.47e-11 | 24 |
meso-epithelial cell | 2.00e-11 | 45 |
hematopoietic lineage restricted progenitor cell | 2.99e-11 | 120 |
mesodermal cell | 3.13e-10 | 121 |
blood vessel endothelial cell | 1.13e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.13e-09 | 18 |
multi fate stem cell | 2.15e-09 | 427 |
somatic stem cell | 2.82e-09 | 433 |
stem cell | 5.18e-09 | 441 |
squamous epithelial cell | 1.53e-08 | 63 |
mesenchymal cell | 4.21e-08 | 354 |
connective tissue cell | 5.25e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.13e-09 | 18 |
endothelium | 1.13e-09 | 18 |
cardiovascular system endothelium | 1.13e-09 | 18 |
simple squamous epithelium | 3.57e-08 | 22 |
vessel | 1.28e-07 | 68 |
vasculature | 2.67e-07 | 78 |
vascular system | 2.67e-07 | 78 |
squamous epithelium | 3.40e-07 | 25 |
connective tissue | 3.48e-07 | 371 |
cardiovascular system | 4.20e-07 | 109 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 2.01e-11 | 51 |
immune system cancer | 2.01e-11 | 51 |
leukemia | 8.69e-07 | 39 |