FFCP PHASE1:Hg19::chr6:90790583..90790604,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:90790583..90790604,-
|short_description=p@chr6:90790583..90790604,-
|description=CAGE_peak_at_chr6:90790583..90790604,-
|association_with_transcript=NA
|E...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:90790583..90790604,- | |||
|coexpression_cluster_id=C911 | |||
|description=CAGE_peak_at_chr6:90790583..90790604,- | |||
|id=chr6:90790583..90790604,- | |||
|ontology_enrichment_celltype=CL:0000738!2.73e-32!140;CL:0000838!4.36e-32!52;CL:0000542!2.68e-31!53;CL:0000051!2.68e-31!53;CL:0000791!6.88e-28!18;CL:0000789!6.88e-28!18;CL:0002420!6.88e-28!18;CL:0002419!6.88e-28!18;CL:0000790!6.88e-28!18;CL:0002087!8.76e-28!119;CL:0000084!2.05e-27!25;CL:0000827!2.05e-27!25;CL:0000988!3.44e-26!182;CL:0000037!1.42e-24!172;CL:0000566!1.42e-24!172;CL:0002031!3.33e-24!124;CL:0002032!2.56e-21!165;CL:0000837!2.56e-21!165;CL:0000625!2.01e-14!11;CL:0000080!2.33e-14!6;CL:0000624!4.33e-14!6;CL:0000898!8.10e-08!3;CL:0000842!8.10e-08!3;CL:0000623!9.88e-08!3;CL:0000825!9.88e-08!3;CL:0000767!2.30e-07!3;CL:0000081!8.05e-07!11;CL:0000094!9.95e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000624;4.56e-27;6!CL:0000084;9.25e-24;25!CL:0000791;1.77e-23;18!CL:0000789;1.77e-23;18!CL:0002419;1.77e-23;18!CL:0000542;9.86e-18;53!CL:0000898;2.69e-14;3!CL:0000226;3.08e-14;3!CL:0000842;3.08e-14;3!CL:0000623;4.40e-14;3!CL:0000081;1.30e-13;11!CL:0000767;2.23e-13;3!CL:0000094;5.11e-13;8!CL:0000815;3.66e-10;2!CL:0000792;3.66e-10;2!CL:0002677;3.66e-10;2!CL:0002087;2.83e-08;104!CL:0000625;9.16e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.36e-29,52;CL:0000542,6.09e-29,53;CL:0000051,6.09e-29,53;CL:0000624,4.66e-27,6;CL:0000084,9.15e-24,25;CL:0000827,9.15e-24,25;CL:0000738,9.84e-24,136;CL:0000791,1.85e-23,18;CL:0000789,1.85e-23,18;CL:0002420,1.85e-23,18;CL:0002419,1.85e-23,18;CL:0000790,1.85e-23,18;CL:0000988,9.98e-23,177;CL:0002087,1.16e-19,115;CL:0000037,2.61e-19,168;CL:0002032,5.96e-16,161;CL:0000837,5.96e-16,161;CL:0000226,2.75e-14,3;CL:0000898,2.75e-14,3;CL:0000842,2.75e-14,3;CL:0000623,4.12e-14,3;CL:0000825,4.12e-14,3;CL:0002031,7.76e-14,120;CL:0000081,1.34e-13,11;CL:0000767,2.28e-13,3;CL:0000094,5.32e-13,8;CL:0000815,3.83e-10,2;CL:0000792,3.83e-10,2;CL:0002677,3.83e-10,2;CL:0000625,9.37e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;1.77e-23;18!CL:0000051;9.86e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!1.29e-12!7;UBERON:0002390!2.55e-10!102;UBERON:0003061!2.55e-10!102;UBERON:0002193!1.68e-09!112;UBERON:0000178!1.40e-08!15;UBERON:0000179!1.40e-08!15;UBERON:0000463!1.40e-08!15;UBERON:0002370!1.99e-08!4;UBERON:0005058!1.99e-08!4;UBERON:0009113!1.99e-08!4;UBERON:0003295!1.99e-08!4;UBERON:0005562!1.99e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.24e-10;15!UBERON:0000179;1.24e-10;15!UBERON:0000463;1.24e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.19e-10,15;UBERON:0000179,1.19e-10,15;UBERON:0000463,1.19e-10,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,3.54027849164014,5.37361157336098,1.70297735647684,0,0,0,0,0,0,1.66198622559563,2.4065333696417,0.868043482863407,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0.28769239232215,0,0,0.344745680736619,0,0,0,0,0,0,1.28371610830437,0.639337125799041,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0,0,0,0.954053754535364,1.70763890732835,5.87237189370939,3.44045905312706,0,5.60508562981536,0,10.8190373562608,9.03924754323079,8.42966145897988,0.167186495390678,17.5998023982139,15.6237775892462,15.5861382726329,0.557052284425868,4.12448270464772,2.65840673500345,2.16643091012012,0.25618263945135,0.390178042679635,0.986627427622057,0.552700035571697,3.47763702882063,13.1975041214234,8.56130649887082,4.18142095219907,0.339928028092699,6.89796888483458,4.12352934579156,6.07247260846807,0.637130828648193,0,0,0.150575119077773,0.511946444617674,3.74792179657038,0.710331756132051,0.821127996921047,14.7172922554055,10.4301676355568,8.25499102131954,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,7.68419964787516,8.62510299438069,4.2353201972317,0.254094624222463,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3384013061444,8.62856803274467,4.69601254335155,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0,0,0,0,0,0.711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.2042959378529,14.9512366125268,17.2296216684001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.73197237702766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9678373206639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1987900020733,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.128915775947154,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516711278688049,0.372448285775147,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0.641136984606466 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,3.54027849164014,5.37361157336098,1.70297735647684,0,0,0,0,0,0,1.66198622559563,2.4065333696417,0.868043482863407,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0.28769239232215,0,0,0.344745680736619,0,0,0,0,0,0,1.28371610830437,0.639337125799041,0,0.199463657621632,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0,0,0,0.954053754535364,1.70763890732835,5.87237189370939,3.44045905312706,0,5.60508562981536,0,10.8190373562608,9.03924754323079,8.42966145897988,0.167186495390678,17.5998023982139,15.6237775892462,15.5861382726329,0.557052284425868,4.12448270464772,2.65840673500345,2.16643091012012,0.25618263945135,0.390178042679635,0.986627427622057,0.552700035571697,3.47763702882063,13.1975041214234,8.56130649887082,4.18142095219907,0.339928028092699,6.89796888483458,4.12352934579156,6.07247260846807,0.637130828648193,0,0,0.150575119077773,0.511946444617674,3.74792179657038,0.710331756132051,0.821127996921047,14.7172922554055,10.4301676355568,8.25499102131954,0,0,0,0,0,0,0,0,0,0,0,0,0.364295288292542,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,7.68419964787516,8.62510299438069,4.2353201972317,0.254094624222463,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.3384013061444,8.62856803274467,4.69601254335155,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0.540031437238115,0,0,0,0,0,0,0.711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.2042959378529,14.9512366125268,17.2296216684001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.73197237702766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.9678373206639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1987900020733,0,0,0,0,0,0,0,0.107824811396682,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.128915775947154,0.0999411559249289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516711278688049,0.372448285775147,0,0,0,0,0,0.26940821205835,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0.641136984606466 | ||
|short_description=p@chr6:90790583..90790604,- | |||
}} | }} |
Latest revision as of 03:48, 31 July 2015
Short description: | p@chr6:90790583..90790604, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:90790583..90790604, - |
Coexpression cluster: | C911_cord_CD8_Natural_mycosis_Basophils_Peripheral_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.36e-29 | 52 |
lymphocyte | 6.09e-29 | 53 |
common lymphoid progenitor | 6.09e-29 | 53 |
CD4-positive, alpha-beta T cell | 4.66e-27 | 6 |
T cell | 9.15e-24 | 25 |
pro-T cell | 9.15e-24 | 25 |
leukocyte | 9.84e-24 | 136 |
mature alpha-beta T cell | 1.85e-23 | 18 |
alpha-beta T cell | 1.85e-23 | 18 |
immature T cell | 1.85e-23 | 18 |
mature T cell | 1.85e-23 | 18 |
immature alpha-beta T cell | 1.85e-23 | 18 |
hematopoietic cell | 9.98e-23 | 177 |
nongranular leukocyte | 1.16e-19 | 115 |
hematopoietic stem cell | 2.61e-19 | 168 |
hematopoietic oligopotent progenitor cell | 5.96e-16 | 161 |
hematopoietic multipotent progenitor cell | 5.96e-16 | 161 |
single nucleate cell | 2.75e-14 | 3 |
naive T cell | 2.75e-14 | 3 |
mononuclear cell | 2.75e-14 | 3 |
natural killer cell | 4.12e-14 | 3 |
pro-NK cell | 4.12e-14 | 3 |
hematopoietic lineage restricted progenitor cell | 7.76e-14 | 120 |
blood cell | 1.34e-13 | 11 |
basophil | 2.28e-13 | 3 |
granulocyte | 5.32e-13 | 8 |
regulatory T cell | 3.83e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.83e-10 | 2 |
naive regulatory T cell | 3.83e-10 | 2 |
CD8-positive, alpha-beta T cell | 9.37e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
blood | 1.19e-10 | 15 |
haemolymphatic fluid | 1.19e-10 | 15 |
organism substance | 1.19e-10 | 15 |