FFCP PHASE1:Hg19::chr7:3340875..3340896,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:3340875..3340896,+
|short_description=p1@SDK1
|description=CAGE_peak_1_at_SDK1_5end
|association_with_transcript=-183bp_to_ENST00000404826,ENST00000446104,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=221935 | |EntrezGene=221935 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19307 | |HGNC=19307 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z5N4,C9JV80 | |UniProt=Q7Z5N4,C9JV80 | ||
|association_with_transcript=-183bp_to_ENST00000404826,ENST00000446104,NM_152744,uc003smx.2_5end | |||
|cluster_id=chr7:3340875..3340896,+ | |||
|coexpression_cluster_id=C1282 | |||
|description=CAGE_peak_1_at_SDK1_5end | |||
|id=chr7:3340875..3340896,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!1.31e-09!22;DOID:2994!1.31e-09!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;4.94e-11;22!DOID:2994;4.94e-11;22!DOID:171;5.35e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.80e-11,22;DOID:2994,3.80e-11,22;DOID:171,5.26e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.86e-22!115;UBERON:0000073!1.21e-17!94;UBERON:0001016!1.21e-17!94;UBERON:0002346!2.34e-17!90;UBERON:0005743!4.48e-17!86;UBERON:0001017!2.11e-16!82;UBERON:0003075!3.10e-15!86;UBERON:0007284!3.10e-15!86;UBERON:0000955!2.38e-13!69;UBERON:0006238!2.38e-13!69;UBERON:0000924!2.48e-13!173;UBERON:0006601!2.48e-13!173;UBERON:0001049!1.97e-12!57;UBERON:0005068!1.97e-12!57;UBERON:0006241!1.97e-12!57;UBERON:0007135!1.97e-12!57;UBERON:0000153!3.80e-12!129;UBERON:0007811!3.80e-12!129;UBERON:0004121!9.41e-12!169;UBERON:0003056!1.04e-11!61;UBERON:0000033!1.13e-11!123;UBERON:0002616!2.11e-11!59;UBERON:0000064!8.10e-11!219;UBERON:0003080!3.86e-09!42;UBERON:0000062!9.92e-09!511;UBERON:0000468!1.13e-08!659;UBERON:0001893!1.15e-08!34;UBERON:0002780!1.20e-08!41;UBERON:0001890!1.20e-08!41;UBERON:0006240!1.20e-08!41;UBERON:0000922!1.81e-08!612;UBERON:0002020!2.03e-08!34;UBERON:0003528!2.03e-08!34;UBERON:0002791!2.10e-08!33;UBERON:0001869!3.39e-08!32;UBERON:0000481!4.42e-08!347;UBERON:0000956!6.89e-08!25;UBERON:0000203!6.89e-08!25;UBERON:0003133!1.80e-07!48;UBERON:0005156!2.88e-07!59;UBERON:0000990!2.88e-07!59;UBERON:0002050!6.36e-07!605;UBERON:0005423!6.36e-07!605;UBERON:0003886!6.80e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.82e-12;49!UBERON:0000956;2.08e-09;25!UBERON:0000203;2.08e-09;25!UBERON:0001893;4.15e-08;34!UBERON:0001869;5.57e-08;32!UBERON:0002791;5.97e-08;32!UBERON:0002619;1.19e-07;22!UBERON:0003528;1.59e-07;34!UBERON:0002020;1.59e-07;34!UBERON:0000073;3.24e-07;53!UBERON:0002616;3.24e-07;53!UBERON:0002780;5.49e-07;41!UBERON:0001890;5.49e-07;41!UBERON:0007023;6.18e-07;114!UBERON:0001016;7.68e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.34e-21,114;UBERON:0002346,1.58e-17,86;UBERON:0001016,1.02e-15,89;UBERON:0003075,5.19e-15,82;UBERON:0007284,5.19e-15,82;UBERON:0001017,1.32e-14,81;UBERON:0011216,5.23e-13,223;UBERON:0001049,3.71e-12,56;UBERON:0005068,3.71e-12,56;UBERON:0006241,3.71e-12,56;UBERON:0007135,3.71e-12,56;UBERON:0004121,1.42e-11,171;UBERON:0000924,1.42e-11,171;UBERON:0006601,1.42e-11,171;UBERON:0003056,1.75e-11,61;UBERON:0000955,4.11e-11,68;UBERON:0006238,4.11e-11,68;UBERON:0000073,6.49e-11,53;UBERON:0002616,6.49e-11,53;UBERON:0010371,2.87e-10,104;UBERON:0001893,1.44e-09,34;UBERON:0000956,1.52e-09,25;UBERON:0000203,1.52e-09,25;UBERON:0002780,5.15e-09,41;UBERON:0001890,5.15e-09,41;UBERON:0003080,5.15e-09,41;UBERON:0006240,5.15e-09,41;UBERON:0001869,5.64e-09,32;UBERON:0002791,5.91e-09,32;UBERON:0003528,8.43e-09,34;UBERON:0002020,8.43e-09,34;UBERON:0010314,7.69e-08,132;UBERON:0002619,8.41e-08,22;UBERON:0003133,2.94e-07,48;UBERON:0001950,7.24e-07,20 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0,1.0007329835313,0.893922188854576,0,0,0.631719873426831,2.08948502559871,1.22866968250754,2.79120467188971,0.218441372130172,0.527533956456907,0.74259811776028,1.32558950291166,0,0,0,0,1.35433163884467,0.816002764977012,4.70182082217132,5.43848375549008,4.37998160233229,7.03038781730896,0,0,0,0.393364276848904,0,0.309632246632152,0,0,0,0,1.27952309238679,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0.232429036905685,0,0.309706370895104,0.28769239232215,0.256160706529101,0,0,0,1.35426486594342,0,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0.521482918420201,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,2.27685187643779,0,0.764546456250458,0,0,0,0.590129310341499,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0.741432815810302,1.07016331235885,1.04535523804977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.383587685530591,0.361439152384566,0,0,0,0,1.22895262313288,1.55210578223795,2.28370442802128,4.84622579341537,0.364295288292542,0.370784442784429,1.62273696827342,2.43781632218974,0.664789802594326,0,0,0.371457501329565,0,0,0,0,0.419499436209906,0.550236083880135,0.417989933073621,0,0,0,0.402829317109147,0,0.732186172644509,0,1.62028389576352,0.267899184852239,0.22452937262617,0.337834441449967,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0.980771418680752,0.454072282934794,1.72852777344,1.87457145467037,0.312160076830321,0,0.298897361103602,0.117434498643765,0.485618833104395,0.421352420106746,0.61246251376468,1.47401180774122,0.929932030581889,0,0.741800787835671,0,0,1.68336113954066,2.00189631795143,0.554128230968366,0,0,0.150238058906597,0.340296549480063,0.179389635688862,0.213557388818567,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0.80823028409406,0,0,0,0.773043412653187,1.09098448236334,0.286804595389004,2.80539524098069,3.31324420803713,3.137236457477,3.52447587052259,2.27088765788066,2.91981887260664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,1.26755034821831,0,0,0,2.58275720940538,1.20097467208968,0.329250856225877,0,0.100528972411631,0.277765335475589,1.62904152655162,1.03993478527958,5.77325368101093,4.28942498407784,0.117408694235822,0.288732895522148,0.462985512576611,0.190254152234598,11.0628615714299,7.72637545885385,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0.144119953416961,0,2.03193261734941,1.14596527667483,1.17217447210047,1.71072446022705,0.205654985406647,0,2.5724378936752,0.224262168690721,0.43596006883328,0.22001485746285,0.904902010304444,0,0,0,0,0.257207374262142,2.83698264046557,0,0.714889968290738,2.71310802695722,0,0,1.06617584622764,0,0,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,0,0,0.579125226670317,0.61642896765115,0.537182889719687,0,0.197030760201927,0,0.128343036279748,3.81141936333695,10.4111883086097,0,0.335032530668698,3.82763250991898,0.749007023947182,0,0.414415513436035,0.36807447515742,0.500170521059677,1.35632511849868,0,0,0,0.117141414992713,0.601892199455438,0,3.10419213877515,0,0.737476674166813,0.521301686808497,1.37060810223918,1.71571711905428,0,0,0.106727557803444,0.606255142892519,3.32870879020994,0.604780586659361,0.248107807818777,0,0,0,0,0,0,0,0.177561725313127,0.0821271560138091,0,0.232420756919918,3.62578348774867,0.601519410909855,0.0920809889358963,0.229628896329213,0.910455840033585,1.57349297951309,1.35359883872224,1.38627606787947,3.13739907670742,1.46139224653261,0.211103257785751,0,0.170093705276516,0.647747748306418,1.54227252690289,4.33514300070165,5.51858751240339,1.01950509218015,0.831076008928724,2.0148727924996,0,0,1.02580050046556,1.31205858279882,0.650756789328606,1.95777922130672,0,0,0,0,0,0.96670718292122,0,0,0,0.214840489736547,0,0.255679882248303,0.0890320356467374,0,0.192190067365106,0,0.2023155617111,0,0,0,1.84820148105653,0,0,0,0.143124886741991,0.744316738719335,0.632758849437452,0.571890581771475,0.767693373934002,3.85145089230528,0,0,0.359744915166629,1.37268514868027,1.29593642580255,0,1.58510321173008,1.26377536871694,0.975267478179181,0,0,0.545999645631943,0,0,0,0,0,0,1.9676842561399,0,0,0,0.143411352204052,0.196498082026242,0,3.54761064070598,0,4.61012850143863,1.13841952129715,2.0996083214699,0.0962221127255121,0,0,1.60044461320525,0.43050537267123,0,0.443430153536676,0,0,0.764637207142375,0,0.476463550915578,0.411362273086194,0,0.540031437238115,0,0,1.92495971052672,0.735120647943095,0,0,0,0.637705090915289,0.199579371432817,0,0,0,0,0,0,0,0,0,0,4.25846237690326,0,5.8375745218607,5.14455048152557,4.50492682622153,0,0,0,0,0,0,0,5.56731081233197,0,0,17.6164411019976,1.67121139316383,0.296964680832639,0,4.97073823883149,3.37606599385231,0,0,0.211125408127993,33.2744140379286,3.86797481743607,35.0186519517444,12.0677045352543,0,0,0,0.895105873378046,0.511572370226872,8.97654991296096,0,0,0.969332746095218,1.39152147242777,27.9459317201672,6.77112178821606,0.174919999992391,8.69999490521752,0.4551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| ||
|short_description=p1@SDK1 | |||
}} | }} |
Latest revision as of 08:23, 18 September 2015
Short description: | p1@SDK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SDK1_5end |
Coexpression cluster: | C1282_small_neuroectodermal_occipital_argyrophil_neuroblastoma_aorta_neuroepithelioma |
Association with transcript: | -183bp_to_ENST00000404826, ENST00000446104, NM_152744, uc003smx.2_5end |
EntrezGene: | SDK1 |
HGNC: | 19307 |
UniProt: | Q7Z5N4C9JV80 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.80e-11 | 22 |
germ cell cancer | 3.80e-11 | 22 |
neuroectodermal tumor | 5.26e-07 | 10 |