FFCP PHASE1:Hg19::chr11:18416103..18416118,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6535 | |||
|TSSclassifier=strong | |||
|UniProt=A8MXQ4,B4DKQ2,E9PH51,F5GZQ4,F5GXC7,F5H6W8,F5H5J4,F5H308,F5GXY2,F5GXU1,F5GWW2,F5H8H6 | |||
|association_with_transcript=0bp_to_ENST00000396222,ENST00000430553,ENST00000445376,ENST00000469976,ENST00000494573,ENST00000535451,ENST00000536528,ENST00000539814,ENST00000541097,ENST00000541620,ENST00000543445,ENST00000543695,ENST00000545215,ENST00000545467_5end | |||
|cluster_id=chr11:18416103..18416118,+ | |||
|coexpression_cluster_id=C3123 | |||
|description=CAGE_peak_1_at_LDHA_5end | |||
|id=chr11:18416103..18416118,+ | |||
|ontology_enrichment_celltype=CL:0000548!2.85e-26!679;CL:0000004!2.85e-26!679;CL:0000255!2.85e-26!679;CL:0000012!4.27e-26!682;CL:0000055!7.25e-23!180;CL:0000144!4.48e-20!625;CL:0002371!3.38e-19!591;CL:0000003!1.74e-14!722;CL:0000057!5.95e-14!75;CL:0000063!4.27e-12!578;CL:0000359!3.83e-10!32;CL:0000220!1.00e-09!246;CL:0002321!2.07e-09!248;CL:0000680!4.26e-09!57;CL:0000056!4.26e-09!57;CL:0000355!4.26e-09!57;CL:0002620!5.77e-09!23;CL:0000723!1.25e-08!436;CL:0000048!2.12e-08!430;CL:0000034!2.25e-08!444;CL:0000187!3.34e-08!54;CL:0000192!5.35e-08!42;CL:0000514!5.35e-08!42;CL:0000393!4.13e-07!60;CL:0000211!4.13e-07!60;CL:0000183!8.88e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.54e-09;32!CL:0002620;5.76e-09;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.19e-14,76;CL:0000359,3.83e-10,32;CL:0002321,3.16e-09,250;CL:0002620,5.77e-09,23;CL:0000680,1.09e-08,58;CL:0000056,1.09e-08,58;CL:0000355,1.09e-08,58;CL:0000723,5.15e-08,433;CL:0000187,8.18e-08,55;CL:0000048,8.49e-08,427;CL:0000034,9.05e-08,441;CL:0000192,1.50e-07,43;CL:0000514,1.50e-07,43;CL:0000393,8.76e-07,61;CL:0000211,8.76e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.90e-12!83;UBERON:0002329!6.90e-12!83;UBERON:0003077!6.90e-12!83;UBERON:0003059!6.90e-12!83;UBERON:0007282!6.90e-12!83;UBERON:0009618!6.90e-12!83;UBERON:0007285!6.90e-12!83;UBERON:0000486!2.02e-11!82;UBERON:0004290!7.86e-11!70;UBERON:0001637!1.16e-10!42;UBERON:0003509!1.16e-10!42;UBERON:0004572!1.16e-10!42;UBERON:0002100!2.22e-10!216;UBERON:0002199!4.37e-10!45;UBERON:0002416!4.37e-10!45;UBERON:0005256!1.82e-09!143;UBERON:0002097!6.30e-09!40;UBERON:0001134!1.40e-08!61;UBERON:0002036!1.40e-08!61;UBERON:0003082!1.40e-08!61;UBERON:0000490!1.85e-08!138;UBERON:0004573!1.86e-08!33;UBERON:0004571!1.86e-08!33;UBERON:0002385!2.12e-08!63;UBERON:0001015!2.12e-08!63;UBERON:0000383!2.12e-08!63;UBERON:0003102!2.31e-08!95;UBERON:0004872!2.55e-07!84;UBERON:0003104!2.62e-07!238;UBERON:0009142!2.62e-07!238;UBERON:0001981!4.18e-07!60;UBERON:0007500!4.18e-07!60;UBERON:0004537!4.18e-07!60;UBERON:0006965!4.18e-07!60;UBERON:0001737!6.84e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.50e-07;33!UBERON:0004571;1.50e-07;33!UBERON:0002097;1.58e-07;41!UBERON:0001637;1.92e-07;42!UBERON:0003509;1.92e-07;42!UBERON:0004572;1.92e-07;42!UBERON:0002199;6.20e-07;46!UBERON:0002416;6.20e-07;46!UBERON:0001737;6.84e-07;9!UBERON:0001557;6.84e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,4.90e-11,83;UBERON:0001637,1.16e-10,42;UBERON:0003509,1.16e-10,42;UBERON:0004572,1.16e-10,42;UBERON:0002329,2.01e-10,71;UBERON:0003059,2.01e-10,71;UBERON:0007282,2.01e-10,71;UBERON:0004290,2.01e-10,71;UBERON:0009618,2.01e-10,71;UBERON:0002199,2.95e-10,46;UBERON:0002416,2.95e-10,46;UBERON:0000490,4.32e-10,148;UBERON:0007524,4.62e-10,73;UBERON:0003077,6.69e-10,72;UBERON:0007285,6.69e-10,72;UBERON:0002100,7.86e-10,199;UBERON:0003102,2.46e-09,99;UBERON:0002097,4.27e-09,41;UBERON:0007503,9.82e-09,78;UBERON:0004573,1.86e-08,33;UBERON:0004571,1.86e-08,33;UBERON:0005256,3.04e-08,122;UBERON:0001134,3.31e-08,62;UBERON:0002036,3.31e-08,62;UBERON:0003082,3.31e-08,62;UBERON:0002385,4.86e-08,64;UBERON:0001015,4.86e-08,64;UBERON:0000383,4.86e-08,64;UBERON:0004872,5.27e-07,83;UBERON:0001737,6.84e-07,9;UBERON:0003914,8.26e-07,117;UBERON:0007500,9.31e-07,59;UBERON:0001981,9.31e-07,59;UBERON:0004537,9.31e-07,59;UBERON:0006965,9.31e-07,59 | |||
|phase1_expression=9372.96926494729,4839.74234255567,7125.94989907182,4584.3577975569,3880.51622181771,7417.49447042543,1996.00303996629,3022.77959434739,1227.57245253924,1963.90562052006,753.625261410222,755.588706198266,526.742655522222,932.455703200991,780.109422463514,765.10601666212,723.233433628772,790.195517799138,771.421754887792,864.186706640974,489.193657603719,497.452642985725,534.402587973683,710.241391703196,573.22769238987,2289.72770323736,1764.25956668988,2049.47132384558,424.440054719967,608.753425382179,354.374106270498,1895.84656487555,2123.80293330544,1414.67884289813,1124.90121962656,2157.7024414616,537.28880398277,409.402606905057,361.381094341195,292.9646754664,106.359850263964,134.415871397877,121.060516788068,439.102681114285,315.148537036467,354.172729334212,327.260083963204,248.345404365183,260.772764293677,336.887791409238,242.328028376529,295.366305130843,560.901222558478,316.932979639659,381.902692196044,432.769138608448,335.128752271035,355.287828907679,569.316039809879,405.333361197106,430.273885662755,275.095984355721,265.685591952014,227.177792033926,376.691591739902,241.706105718426,223.593187389411,332.904481465185,308.196404786339,304.281571431868,391.088078701156,325.18915257702,278.170438560537,507.223942434972,466.453834123306,443.008717959198,376.076257078466,372.739048032619,263.750687769908,408.423261781209,437.417773160799,401.313145820901,207.675568464361,177.495048660193,196.581545103846,198.856283715992,167.365522581053,163.804445387028,193.686147725965,186.040482134396,100.750695532372,155.617855183299,129.972897562578,375.366573164433,857.017592798769,583.659131861571,394.206379308121,338.77527748978,480.490703161853,426.994309227792,219.997529977674,194.587048156975,118.844304328826,776.085242662119,332.610069539091,344.485206077531,293.822192185042,558.221971364492,485.771663136145,472.430099926361,470.347730271514,601.631205985969,260.242918349416,222.861509798731,247.749191417795,1078.02508642464,405.830502724435,370.430386230275,388.132207557917,225.54431334146,207.044538326341,214.802162045333,275.85361815048,250.469798029197,256.107989432309,223.99128043364,239.769375100946,688.890241598911,535.415271958582,355.254262724506,334.015406850128,754.538467166591,3722.20703782701,2309.59618373738,3063.17463398529,1885.611983832,3701.26079757582,2296.42995295814,574.393549088876,549.888905707159,558.717071793975,340.807554445048,951.903588308413,1487.58718445113,603.658152197711,554.080824086268,605.357594242393,197.708727549128,177.89041725262,227.331990813694,1325.14896991382,1067.5511325267,892.498229633125,794.822966345158,856.617848740628,1000.05408245215,1107.46432767856,609.605134880447,625.792856065923,832.7848845585,663.057055961656,726.820133066898,224.781155001864,1518.08085874809,660.265687523634,809.323437438615,470.838094397078,667.898690746584,804.912346695887,1392.57272258645,841.628811616291,282.010093313175,314.102013960144,1817.20391527794,3974.28469770746,2040.77732598637,2415.67309475636,1082.52140670602,1176.43502375195,2432.78010701747,3323.09623706572,1729.87951704954,1023.88430646523,867.536728128791,1351.17609113585,1255.81257717,1019.25521040512,413.811648618485,1566.41926553455,1949.87268603893,1391.51666461782,1661.93302480656,1702.25588297527,1955.63703252211,1455.61924104739,1222.93846315596,1106.20581326774,835.166008669284,701.990812221823,1083.09202070625,359.309070908119,1462.50415803293,1180.8685905516,1848.84884262595,1078.12903688334,1619.48151300202,785.444571963688,2585.45975076636,3381.67402237074,2967.37991763399,3865.21401334809,2240.78021446223,3409.0807197368,3467.84166901417,3096.79837250132,2751.22299186488,4534.81565720734,4012.68727538444,2881.99027659175,1092.40405198153,2419.03536340821,3454.99095242224,4258.5142758779,1514.19878453443,2004.95673246323,1732.29975614958,417.272048669346,463.854189125198,1347.03637968633,660.424581502925,1149.82611744024,1105.88139799976,2274.77620007552,1900.13373142178,3056.92580953039,1616.46475747932,1487.07173223935,3982.44350294123,3730.77919142839,3919.32136796518,4025.06824089598,3978.69652857143,4208.23170055441,4074.06280736753,3963.08493113661,4083.70632382899,472.419490959775,771.329755918952,467.136502861139,283.726812974096,1522.32796821019,2568.12751717864,1071.10210081339,1037.43828362443,581.612325870384,2959.37315983927,3976.80159178155,1529.7878618362,2427.67415476847,1266.98028354932,236.536829655296,644.759566873339,1948.47311734119,1278.36457566017,683.553417840954,578.620722626384,593.547427123215,385.074404122827,614.779021612316,660.175858650957,719.692308793462,719.095106772877,749.992844908923,2737.02795241389,1615.65210901663,2934.46096272292,2757.05912140718,3392.27933033496,3663.22149942359,820.284291096746,486.995888527153,313.687438813188,223.38592779629,246.803957348573,951.198456496692,641.358566512348,638.835087294756,875.890923636251,1436.19159058732,899.527458242533,633.391374709361,1419.69165889661,1209.78919101235,2627.49076610718,647.52202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| |||
|short_description=p1@LDHA | |||
}} |
Latest revision as of 02:29, 17 September 2015
Short description: | p1@LDHA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LDHA_5end |
Coexpression cluster: | C3123_basal_Adipocyte_Preadipocyte_Olfactory_serous_mesenchymal_Smooth |
Association with transcript: | 0bp_to_ENST00000396222, ENST00000430553, ENST00000445376, ENST00000469976, ENST00000494573, ENST00000535451, ENST00000536528, ENST00000539814, ENST00000541097, ENST00000541620, ENST00000543445, ENST00000543695, ENST00000545215, ENST00000545467_5end |
EntrezGene: | LDHA |
HGNC: | 6535 |
UniProt: | A8MXQ4B4DKQ2E9PH51F5GZQ4F5GXC7F5H6W8F5H5J4F5H308F5GXY2F5GXU1F5GWW2F5H8H6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.19e-14 | 76 |
vascular associated smooth muscle cell | 3.83e-10 | 32 |
embryonic cell | 3.16e-09 | 250 |
skin fibroblast | 5.77e-09 | 23 |
muscle precursor cell | 1.09e-08 | 58 |
myoblast | 1.09e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.09e-08 | 58 |
somatic stem cell | 5.15e-08 | 433 |
muscle cell | 8.18e-08 | 55 |
multi fate stem cell | 8.49e-08 | 427 |
stem cell | 9.05e-08 | 441 |
smooth muscle cell | 1.50e-07 | 43 |
smooth muscle myoblast | 1.50e-07 | 43 |
electrically responsive cell | 8.76e-07 | 61 |
electrically active cell | 8.76e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 4.90e-11 | 83 |
artery | 1.16e-10 | 42 |
arterial blood vessel | 1.16e-10 | 42 |
arterial system | 1.16e-10 | 42 |
somite | 2.01e-10 | 71 |
presomitic mesoderm | 2.01e-10 | 71 |
presumptive segmental plate | 2.01e-10 | 71 |
dermomyotome | 2.01e-10 | 71 |
trunk paraxial mesoderm | 2.01e-10 | 71 |
integument | 2.95e-10 | 46 |
integumental system | 2.95e-10 | 46 |
unilaminar epithelium | 4.32e-10 | 148 |
dense mesenchyme tissue | 4.62e-10 | 73 |
paraxial mesoderm | 6.69e-10 | 72 |
presumptive paraxial mesoderm | 6.69e-10 | 72 |
trunk | 7.86e-10 | 199 |
surface structure | 2.46e-09 | 99 |
skin of body | 4.27e-09 | 41 |
epithelial vesicle | 9.82e-09 | 78 |
systemic artery | 1.86e-08 | 33 |
systemic arterial system | 1.86e-08 | 33 |
trunk mesenchyme | 3.04e-08 | 122 |
skeletal muscle tissue | 3.31e-08 | 62 |
striated muscle tissue | 3.31e-08 | 62 |
myotome | 3.31e-08 | 62 |
muscle tissue | 4.86e-08 | 64 |
musculature | 4.86e-08 | 64 |
musculature of body | 4.86e-08 | 64 |
splanchnic layer of lateral plate mesoderm | 5.27e-07 | 83 |
larynx | 6.84e-07 | 9 |
epithelial tube | 8.26e-07 | 117 |
epithelial tube open at both ends | 9.31e-07 | 59 |
blood vessel | 9.31e-07 | 59 |
blood vasculature | 9.31e-07 | 59 |
vascular cord | 9.31e-07 | 59 |