FFCP PHASE1:Mm9::chr11:82834290..82834345,-: Difference between revisions
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{{FFCP|EntrezGene=100505399,276950|HGNC=|MCL_coexpression_id=918|UniProt=B1ARD8,Q7TMF1,Q7TMF0|association_with_transcript=0bp_to_ENSMUST00000038141,ENSMUST00000092838,NM_181545,uc007kod.2,uc011yba.1_5end|description=CAGE_peak_1_at_LOC100505399_5end,CAGE_peak_1_at_Slfn8_5end|id=chr11:82834290..82834345,-|ontology_enrichment_celltype=CL:0000838!8.97e-08!12;CL:0002031!1.16e-07!25;CL:0000988!1.56e-07!32;CL:0002032!1.56e-07!32;CL:0000037!1.56e-07!32;CL:0000566!1.56e-07!32;CL:0000837!1.56e-07!32;CL:0000084!3.70e-07!11;CL:0000827!3.70e-07!11|ontology_enrichment_celltype_v019_2=CL:0002031,1.11e-08,25;CL:0000988,1.71e-08,32;CL:0002032,1.71e-08,32;CL:0000037,1.71e-08,32;CL:0000837,1.71e-08,32;CL:0000838,3.23e-08,12;CL:0000084,1.47e-07,11;CL:0000827,1.47e-07,11;CL:0000542,4.68e-07,13;CL:0000051,4.68e-07,13;CL:0000738,5.15e-07,17;CL:0002087,5.15e-07,17;CL:0002320,6.63e-07,46;CL:0000134,6.63e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.07e-16!48;UBERON:0002390!2.34e-16!45;UBERON:0003061!2.34e-16!45;UBERON:0002405!4.58e-16!70;UBERON:0003081!4.06e-12!88;UBERON:0004177!1.07e-11!29;UBERON:0005057!1.04e-10!51;UBERON:0000926!7.82e-10!193;UBERON:0004120!7.82e-10!193;UBERON:0006603!7.82e-10!193;UBERON:0003104!1.13e-09!131;UBERON:0009142!1.13e-09!131;UBERON:0003408!1.67e-09!24;UBERON:0006562!3.51e-09!24;UBERON:0001557!3.51e-09!24;UBERON:0001042!3.51e-09!24;UBERON:0008814!3.51e-09!24;UBERON:0009145!3.51e-09!24;UBERON:0002370!5.24e-09!23;UBERON:0000974!5.24e-09!23;UBERON:0004807!5.24e-09!23;UBERON:0005058!5.24e-09!23;UBERON:0003351!5.24e-09!23;UBERON:0009113!5.24e-09!23;UBERON:0003295!5.24e-09!23;UBERON:0009722!5.24e-09!23;UBERON:0005562!5.24e-09!23;UBERON:0007690!5.24e-09!23;UBERON:0000077!5.31e-09!97;UBERON:0001041!3.05e-08!92;UBERON:0002530!1.85e-07!65;UBERON:0002204!8.24e-07!32|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.31e-18,48;UBERON:0002405,6.31e-18,48;UBERON:0002390,1.45e-17,45;UBERON:0003061,1.45e-17,45;UBERON:0000077,2.04e-13,35;UBERON:0004177,1.10e-12,29;UBERON:0005057,1.10e-12,29;UBERON:0003081,2.82e-11,87;UBERON:0003408,2.51e-10,24;UBERON:0006562,5.64e-10,24;UBERON:0001557,5.64e-10,24;UBERON:0001042,5.64e-10,24;UBERON:0008814,5.64e-10,24;UBERON:0009145,5.64e-10,24;UBERON:0002370,8.61e-10,23;UBERON:0000974,8.61e-10,23;UBERON:0004807,8.61e-10,23;UBERON:0005058,8.61e-10,23;UBERON:0003351,8.61e-10,23;UBERON:0009113,8.61e-10,23;UBERON:0003295,8.61e-10,23;UBERON:0009722,8.61e-10,23;UBERON:0005562,8.61e-10,23;UBERON:0007690,8.61e-10,23;UBERON:0001041,1.09e-08,80;UBERON:0000926,1.14e-08,120;UBERON:0004120,1.14e-08,120;UBERON:0006603,1.14e-08,120;UBERON:0002530,4.48e-08,65;UBERON:0000072,1.39e-07,27;UBERON:0002204,5.52e-07,32;UBERON:0001004,6.04e-07,42;UBERON:0002384,6.63e-07,46|phase1_expression=0.480446541314382,0,0,0,0,0,0,83.4136669432583,10.4183654392233,13.5757425266756,8.04724450659873,9.97151987441705,139.357394164001,105.953527731825,24.650122374359,27.941586899796,6.29605690315332,107.099405139122,108.731745849351,53.0487064747538,3.14660173558958,13.5035693633204,19.3287843962812,2.3998863419011,1.14704640533585,0,0,0,0,0.252030129759931,0.665191531965914,0,0,0,0,0,0,32.2269355667419,31.253413780952,59.1581830690392,38.2350467220159,29.3709558532132,37.86980753643,5.41356317294982,3.14268486780495,0.734187008646726,0.782391344348039,0,0,0.194429899074283,0.699932108126813,0,39.5966950296258,60.2050577869416,54.7832892602216,2.05807548828758,2.57880095944881,3.09403255366465,0,0,0,0.338844532069132,0.889294796111139,4.04954872776629,6.92206453796882,7.8152812644071,1.19840044207362,0.384218305321555,0,0.135005938331691,0,0,0.220868540951614,0,0,0,0,1.0214987046815,0.768032666281217,0,0,0,0.558365998002762,0,0.763991238884051,0,0.711858403995515,0,2.12033341332915,2.11600368298999,4.92769630792852,4.30211938490693,0,0,0,1.34408066129201,6.03911006566533,3.2381761289831,1.03914401841148,2.12003744706204,0,2.56652954828636,15.2883143823987,0,0,0,0,5.48082622651488,183.586959505845,13.5082346548991,0.867426633830679,0.304465478312141,0.691846491768175,3.16517545160507,2.58695155698551,6.40899615781345,1.97755974187499,21.8345028949067,36.2690326299448,1.94120219936891,2.65009822152472,7.75800405016355,3.72783522436244,0.878342391034642,0.209446706813455,4.85368404896324,4.31334448221313,1.79970819298022,3.43089613097275,2.24685959107234,1.37250180845588,0.125654352112864,1.21677024134594,1.53429274398198,2.28566849015516,0.973447578406546,1.2220723662038,9.08170885453679,4.80173241023982,3.15662783829711,0.260240885925407,0.229902104433473,0.180062129805349,0.90422890701429,0.408218994907967,1.2811372028485,0.281105173679186,1.29351685369508,0.215567992932842,0.189106080167819,0.351902248327898,0.657587197282725,0,1.0447564995665,1.85203922767149,0,5.61770549850588,2.57347907114715,1.70498099637356,0,0,0.36012412292203,0.946978942340841,0.393528463494808,0.771335564436891,0.697601834251224,0.804820204198858,0.817357396570186,0.493679549740441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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100505399,276950 | |||
|HGNC= | |||
|MCL_coexpression_id=918 | |||
|TSSclassifier=NA | |||
|UniProt=B1ARD8,Q7TMF1,Q7TMF0 | |||
|association_with_transcript=0bp_to_ENSMUST00000038141,ENSMUST00000092838,NM_181545,uc007kod.2,uc011yba.1_5end | |||
|cluster_id=chr11:82834290..82834345,- | |||
|description=CAGE_peak_1_at_LOC100505399_5end,CAGE_peak_1_at_Slfn8_5end | |||
|id=chr11:82834290..82834345,- | |||
|ontology_enrichment_celltype=CL:0000838!8.97e-08!12;CL:0002031!1.16e-07!25;CL:0000988!1.56e-07!32;CL:0002032!1.56e-07!32;CL:0000037!1.56e-07!32;CL:0000566!1.56e-07!32;CL:0000837!1.56e-07!32;CL:0000084!3.70e-07!11;CL:0000827!3.70e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,1.11e-08,25;CL:0000988,1.71e-08,32;CL:0002032,1.71e-08,32;CL:0000037,1.71e-08,32;CL:0000837,1.71e-08,32;CL:0000838,3.23e-08,12;CL:0000084,1.47e-07,11;CL:0000827,1.47e-07,11;CL:0000542,4.68e-07,13;CL:0000051,4.68e-07,13;CL:0000738,5.15e-07,17;CL:0002087,5.15e-07,17;CL:0002320,6.63e-07,46;CL:0000134,6.63e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.07e-16!48;UBERON:0002390!2.34e-16!45;UBERON:0003061!2.34e-16!45;UBERON:0002405!4.58e-16!70;UBERON:0003081!4.06e-12!88;UBERON:0004177!1.07e-11!29;UBERON:0005057!1.04e-10!51;UBERON:0000926!7.82e-10!193;UBERON:0004120!7.82e-10!193;UBERON:0006603!7.82e-10!193;UBERON:0003104!1.13e-09!131;UBERON:0009142!1.13e-09!131;UBERON:0003408!1.67e-09!24;UBERON:0006562!3.51e-09!24;UBERON:0001557!3.51e-09!24;UBERON:0001042!3.51e-09!24;UBERON:0008814!3.51e-09!24;UBERON:0009145!3.51e-09!24;UBERON:0002370!5.24e-09!23;UBERON:0000974!5.24e-09!23;UBERON:0004807!5.24e-09!23;UBERON:0005058!5.24e-09!23;UBERON:0003351!5.24e-09!23;UBERON:0009113!5.24e-09!23;UBERON:0003295!5.24e-09!23;UBERON:0009722!5.24e-09!23;UBERON:0005562!5.24e-09!23;UBERON:0007690!5.24e-09!23;UBERON:0000077!5.31e-09!97;UBERON:0001041!3.05e-08!92;UBERON:0002530!1.85e-07!65;UBERON:0002204!8.24e-07!32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.31e-18,48;UBERON:0002405,6.31e-18,48;UBERON:0002390,1.45e-17,45;UBERON:0003061,1.45e-17,45;UBERON:0000077,2.04e-13,35;UBERON:0004177,1.10e-12,29;UBERON:0005057,1.10e-12,29;UBERON:0003081,2.82e-11,87;UBERON:0003408,2.51e-10,24;UBERON:0006562,5.64e-10,24;UBERON:0001557,5.64e-10,24;UBERON:0001042,5.64e-10,24;UBERON:0008814,5.64e-10,24;UBERON:0009145,5.64e-10,24;UBERON:0002370,8.61e-10,23;UBERON:0000974,8.61e-10,23;UBERON:0004807,8.61e-10,23;UBERON:0005058,8.61e-10,23;UBERON:0003351,8.61e-10,23;UBERON:0009113,8.61e-10,23;UBERON:0003295,8.61e-10,23;UBERON:0009722,8.61e-10,23;UBERON:0005562,8.61e-10,23;UBERON:0007690,8.61e-10,23;UBERON:0001041,1.09e-08,80;UBERON:0000926,1.14e-08,120;UBERON:0004120,1.14e-08,120;UBERON:0006603,1.14e-08,120;UBERON:0002530,4.48e-08,65;UBERON:0000072,1.39e-07,27;UBERON:0002204,5.52e-07,32;UBERON:0001004,6.04e-07,42;UBERON:0002384,6.63e-07,46 | |||
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| |||
|short_description=p1@LOC100505399,p1@Slfn8 | |||
}} |
Latest revision as of 19:47, 25 September 2015
Short description: | p1@LOC100505399, p1@Slfn8 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC100505399_5end, CAGE_peak_1_at_Slfn8_5end |
Coexpression cluster: | MCL_coexpression_mm9:918 |
Association with transcript: | 0bp_to_ENSMUST00000038141, ENSMUST00000092838, NM_181545, uc007kod.2, uc011yba.1_5end |
EntrezGene: | 100505399,276950 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 1.11e-08 | 25 |
hematopoietic cell | 1.71e-08 | 32 |
hematopoietic oligopotent progenitor cell | 1.71e-08 | 32 |
hematopoietic stem cell | 1.71e-08 | 32 |
hematopoietic multipotent progenitor cell | 1.71e-08 | 32 |
lymphoid lineage restricted progenitor cell | 3.23e-08 | 12 |
T cell | 1.47e-07 | 11 |
pro-T cell | 1.47e-07 | 11 |
lymphocyte | 4.68e-07 | 13 |
common lymphoid progenitor | 4.68e-07 | 13 |
leukocyte | 5.15e-07 | 17 |
nongranular leukocyte | 5.15e-07 | 17 |
connective tissue cell | 6.63e-07 | 46 |
mesenchymal cell | 6.63e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.31e-18 | 48 |
immune system | 6.31e-18 | 48 |
hematopoietic system | 1.45e-17 | 45 |
blood island | 1.45e-17 | 45 |
mixed endoderm/mesoderm-derived structure | 2.04e-13 | 35 |
hemopoietic organ | 1.10e-12 | 29 |
immune organ | 1.10e-12 | 29 |
lateral plate mesoderm | 2.82e-11 | 87 |
gland of gut | 2.51e-10 | 24 |
pharynx | 5.64e-10 | 24 |
upper respiratory tract | 5.64e-10 | 24 |
chordate pharynx | 5.64e-10 | 24 |
pharyngeal arch system | 5.64e-10 | 24 |
pharyngeal region of foregut | 5.64e-10 | 24 |
thymus | 8.61e-10 | 23 |
neck | 8.61e-10 | 23 |
respiratory system epithelium | 8.61e-10 | 23 |
hemolymphoid system gland | 8.61e-10 | 23 |
pharyngeal epithelium | 8.61e-10 | 23 |
thymic region | 8.61e-10 | 23 |
pharyngeal gland | 8.61e-10 | 23 |
entire pharyngeal arch endoderm | 8.61e-10 | 23 |
thymus primordium | 8.61e-10 | 23 |
early pharyngeal endoderm | 8.61e-10 | 23 |
foregut | 1.09e-08 | 80 |
mesoderm | 1.14e-08 | 120 |
mesoderm-derived structure | 1.14e-08 | 120 |
presumptive mesoderm | 1.14e-08 | 120 |
gland | 4.48e-08 | 65 |
segment of respiratory tract | 1.39e-07 | 27 |
musculoskeletal system | 5.52e-07 | 32 |
respiratory system | 6.04e-07 | 42 |
connective tissue | 6.63e-07 | 46 |