FFCP PHASE1:Hg19::chr3:49059164..49059185,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25915 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29918 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BU61,Q9Y3Z0,A4FU71 | |||
|association_with_transcript=90bp_to_NM_199069,NM_199070,uc003cvq.2,uc003cvr.2,uc003cvs.2_5end | |||
|cluster_id=chr3:49059164..49059185,+ | |||
|description=CAGE_peak_3_at_NDUFAF3_5end | |||
|id=chr3:49059164..49059185,+ | |||
|ontology_enrichment_celltype=CL:0000548!9.64e-27!679;CL:0000004!9.64e-27!679;CL:0000255!9.64e-27!679;CL:0000012!2.53e-26!682;CL:0000144!7.79e-19!625;CL:0000220!1.71e-18!246;CL:0002321!5.62e-18!248;CL:0000222!1.19e-17!119;CL:0002371!1.09e-16!591;CL:0000055!6.39e-16!180;CL:0000183!4.24e-14!59;CL:0000192!6.62e-14!42;CL:0000514!6.62e-14!42;CL:0000680!8.32e-14!57;CL:0000056!8.32e-14!57;CL:0000355!8.32e-14!57;CL:0000003!1.91e-13!722;CL:0000187!3.37e-13!54;CL:0000066!4.94e-13!254;CL:0000393!5.00e-11!60;CL:0000211!5.00e-11!60;CL:0000359!9.73e-11!32;CL:0000063!3.62e-09!578 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.12e-10;32!CL:0000192;5.19e-10;43!CL:1000449;2.25e-07;15!CL:1000507;3.11e-07;10!CL:1000494;3.11e-07;10!CL:0000187;4.37e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.63e-18,121;CL:0002321,1.38e-15,250;CL:0000192,2.19e-14,43;CL:0000514,2.19e-14,43;CL:0000680,3.82e-13,58;CL:0000056,3.82e-13,58;CL:0000355,3.82e-13,58;CL:0000187,1.78e-12,55;CL:0000359,1.07e-11,32;CL:0000066,1.05e-10,253;CL:0000393,6.94e-10,61;CL:0000211,6.94e-10,61;CL:1000449,2.23e-07,15;CL:1000507,3.68e-07,10;CL:1000494,3.68e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000514;5.19e-10;43!CL:0000355;4.52e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!1.91e-13!143;UBERON:0002100!2.33e-13!216;UBERON:0002049!1.07e-12!79;UBERON:0007798!1.07e-12!79;UBERON:0003914!1.63e-12!118;UBERON:0000486!1.81e-12!82;UBERON:0000914!1.82e-11!83;UBERON:0002329!1.82e-11!83;UBERON:0003077!1.82e-11!83;UBERON:0003059!1.82e-11!83;UBERON:0007282!1.82e-11!83;UBERON:0009618!1.82e-11!83;UBERON:0007285!1.82e-11!83;UBERON:0003104!4.22e-11!238;UBERON:0009142!4.22e-11!238;UBERON:0004290!4.25e-11!70;UBERON:0000490!5.20e-11!138;UBERON:0001134!7.74e-11!61;UBERON:0002036!7.74e-11!61;UBERON:0003082!7.74e-11!61;UBERON:0000055!5.31e-10!69;UBERON:0002385!8.18e-10!63;UBERON:0001015!8.18e-10!63;UBERON:0000383!8.18e-10!63;UBERON:0001637!8.20e-10!42;UBERON:0003509!8.20e-10!42;UBERON:0004572!8.20e-10!42;UBERON:0004872!1.36e-09!84;UBERON:0001981!2.60e-09!60;UBERON:0007500!2.60e-09!60;UBERON:0004537!2.60e-09!60;UBERON:0006965!2.60e-09!60;UBERON:0001009!1.85e-07!113;UBERON:0004535!2.07e-07!110;UBERON:0004573!3.80e-07!33;UBERON:0004571!3.80e-07!33;UBERON:0006554!8.79e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.25e-07;15!UBERON:0004819;2.25e-07;15!UBERON:0001285;2.25e-07;15!UBERON:0007684;2.25e-07;15!UBERON:0004211;3.11e-07;10!UBERON:0009773;3.11e-07;10!UBERON:0001231;3.11e-07;10!UBERON:0004810;3.11e-07;10!UBERON:0001637;4.22e-07;42!UBERON:0003509;4.22e-07;42!UBERON:0004572;4.22e-07;42!UBERON:0002113;4.25e-07;24!UBERON:0011143;4.25e-07;24!UBERON:0003914;6.19e-07;74!UBERON:0004573;9.73e-07;33!UBERON:0004571;9.73e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.57e-13,78;UBERON:0002100,5.85e-13,199;UBERON:0002049,7.15e-13,78;UBERON:0007798,7.15e-13,78;UBERON:0000486,1.67e-12,83;UBERON:0003914,1.45e-11,117;UBERON:0003104,2.91e-11,160;UBERON:0009142,2.91e-11,160;UBERON:0002329,3.00e-11,71;UBERON:0003059,3.00e-11,71;UBERON:0007282,3.00e-11,71;UBERON:0004290,3.00e-11,71;UBERON:0009618,3.00e-11,71;UBERON:0001134,6.27e-11,62;UBERON:0002036,6.27e-11,62;UBERON:0003082,6.27e-11,62;UBERON:0007524,6.39e-11,73;UBERON:0003077,8.77e-11,72;UBERON:0007285,8.77e-11,72;UBERON:0001637,9.98e-11,42;UBERON:0003509,9.98e-11,42;UBERON:0004572,9.98e-11,42;UBERON:0000490,2.28e-10,148;UBERON:0002385,5.84e-10,64;UBERON:0001015,5.84e-10,64;UBERON:0000383,5.84e-10,64;UBERON:0000055,9.48e-10,68;UBERON:0005256,1.67e-09,122;UBERON:0007500,2.31e-09,59;UBERON:0001981,2.31e-09,59;UBERON:0004537,2.31e-09,59;UBERON:0006965,2.31e-09,59;UBERON:0004872,3.36e-09,83;UBERON:0006554,3.03e-08,47;UBERON:0001009,4.77e-08,112;UBERON:0004535,5.40e-08,109;UBERON:0004573,8.81e-08,33;UBERON:0004571,8.81e-08,33;UBERON:0001008,9.03e-08,48;UBERON:0004211,2.23e-07,15;UBERON:0009773,2.23e-07,15;UBERON:0001231,2.23e-07,15;UBERON:0001285,2.23e-07,15;UBERON:0007684,2.23e-07,15;UBERON:0004208,2.23e-07,15;UBERON:0004810,3.68e-07,10 | |||
|phase1_expression=3.27021082687002,4.92431204949261,2.39622486963151,2.00146596706261,1.78784437770915,0.872338524100369,7.59899634504932,3.15859936713415,3.13422753839806,4.17747692052565,6.28021051175185,3.05817920982241,2.63766978228454,3.09415882400117,0.994192127183747,1.34465029290355,4.21886169616784,1.46062018077475,1.95173119516203,1.10808952269109,2.44800829493104,3.13454721478088,1.43117993565528,2.32686522623903,1.75759695432724,0,0.246301768349837,0.157421562627358,0,0.767658796194425,0.619264493264304,0.919421224478927,1.8072355126695,0.739508020333575,0.0774672005803016,0.426507697462265,3.22960483268332,0,0.401088894940283,1.08505435357926,0.223915474239924,0,0,0.436194716338694,0.377875943688809,0,0.464858073811369,0.411167888021826,0.309706370895104,0,0.256160706529101,0.236482229888585,0.344745680736619,0,0,0,0,0.449446968890169,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0,0.290209238628584,0,0.622822248995575,0.251248665256743,1.0429658368404,0,0,0.368277635987565,0.316462387440884,0.422510572623884,1.06302149982522,0.838634582033504,1.01095768031846,0.300353785683013,0.16072558669708,1.14005097496499,0.59675003159727,0.365328307529268,1.75996244461323,0,0,0.426730222566507,0.400395987036012,0,0,0,0,0,0,0,1.12101712596307,0.790152254325231,0.196709770113833,1.17903228824749,0.205601498999509,0.167186495390678,0,0.473447805734733,0,0.445641827540694,0,0.221533894583621,0,0.128091319725675,0.520237390239513,0.657751618414705,0.276350017785848,0.289803085735052,0.14828656316206,0,0,0.226618685395132,0.383220493601921,0.34362744548263,0.253019692019503,0,0,0,0,0,0,0.236777252044017,0.821127996921047,0.604820229674197,1.06976078313403,0.434473211648397,4.87613732627923,6.03630773733273,3.06870148424473,1.80719576192283,0.50133791063589,4.05570253090306,2.3858578411533,0.973269740605272,1.89069634328136,3.99112915432615,2.89854792787316,5.30465255765736,2.5500670180478,1.48313777113772,1.9472843619281,1.74129737299267,1.72845348674525,0.238490624305342,0,0,2.78267370313387,0,1.73570250803797,2.82653970962005,3.77549492588915,1.6507082516404,2.71693456497854,1.55050055501597,1.42306505074684,0.66944122552934,3.22263453687318,1.52054421143703,1.95249646038536,2.20597848207521,4.0507097394088,1.42879565254528,0.898117490504679,1.91439516821648,3.06633274931766,2.84779697870439,2.93122790288652,0,0,3.05265836499774,3.47880366186723,4.30543739659571,1.72131935057184,0.573673241497627,3.19201543978521,0.560677600142307,4.2699598291882,6.90669135568048,2.17847724779836,0.808264032418128,0.980771418680752,1.66493170409425,1.72852777344,2.34321431833797,2.80944069147288,3.4228309292667,2.09228152772521,0.352303495931295,0.485618833104395,0.140450806702248,2.04154171254893,2.45668634623536,1.34323515528495,2.37600571456411,1.23633464639278,1.82032272387605,6.46756327634615,1.34668891163253,1.00094815897571,0.554128230968366,2.19488810440419,2.75839016219118,1.80285670687916,4.76415169272088,0.538168907066586,0.427114777637135,0.847727604638247,0.900273288253207,0.721367704669072,0.772921620136887,2.23340227597908,1.35021065793013,1.75386609290158,1.51460264546469,1.19664868234989,0.80823028409406,1.06502877754984,1.30977727695932,3.56077243852024,3.86521706326594,2.45471508531751,4.30206893083506,0.609868530647977,0.265059536642971,0.580969714347592,0.310983165046111,0.756962552626885,1.09493207722749,4.69348596989448,1.92972281457866,6.90674606762403,0.928735856063958,2.88751792667834,4.61396520155391,3.87744787179634,2.41011029883482,5.73528658208448,4.57546832594053,4.03360052488864,6.47190279168789,3.72820783738158,3.07797725557112,0,2.80483547606892,3.7041661019826,11.7606969108434,0,0.982827216677626,0.590789906681404,1.32438929824395,2.09080345523293,2.40194934417936,1.97550513735526,3.37205259772859,1.50793458617446,0.925884451585296,0.977424915930974,2.07986957055916,4.3299402607582,1.97081688457631,5.04857385214033,2.7429625074604,2.77791307545966,3.23432058798817,2.37061319387782,2.57545848628462,0.246217006087397,0.234004265139238,0.743155811443641,8.43604505880993,2.51973192298289,2.55195175036296,0.626909658919938,1.45316969256981,1.91691339582606,0.492663237895943,1.05658120815871,0.414656231081544,0.576479813667846,0.75745460055828,2.15892840593375,3.4378958300245,7.03304683260282,3.4214489204541,1.54241239054985,6.30720421472227,5.71652865261156,0.336393253036082,0.87192013766656,1.3200891447771,2.71470603091333,10.7296933755565,0.845302752556,3.72313363218819,3.12022310734098,3.34369586540785,2.83698264046557,1.8649552531127,2.28764789853036,5.96883765930587,3.29296134712308,3.25736184293735,2.48774364119782,2.37585561880029,4.52159065589379,4.35766729300147,3.59902768255405,1.2162378064119,0.502257091432126,0,2.15662369942424,3.44585807502342,2.85273810081437,2.17171960001369,5.75333703141074,1.61154866915906,0.336255431980582,0.985153801009636,0.215627574859517,0.77005821767849,1.27047312111232,1.30139853857622,0.773288812777695,0.837581326671744,0,0,0,0.4144155134360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| |||
|short_description=p3@NDUFAF3 | |||
}} |
Latest revision as of 15:39, 18 September 2015
Short description: | p3@NDUFAF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NDUFAF3_5end |
Coexpression cluster: | NA |
Association with transcript: | 90bp_to_NM_199069, NM_199070, uc003cvq.2, uc003cvr.2, uc003cvs.2_5end |
EntrezGene: | NDUFAF3 |
HGNC: | 29918 |
UniProt: | Q9BU61Q9Y3Z0A4FU71 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.63e-18 | 121 |
embryonic cell | 1.38e-15 | 250 |
smooth muscle cell | 2.19e-14 | 43 |
smooth muscle myoblast | 2.19e-14 | 43 |
muscle precursor cell | 3.82e-13 | 58 |
myoblast | 3.82e-13 | 58 |
multi-potent skeletal muscle stem cell | 3.82e-13 | 58 |
muscle cell | 1.78e-12 | 55 |
vascular associated smooth muscle cell | 1.07e-11 | 32 |
epithelial cell | 1.05e-10 | 253 |
electrically responsive cell | 6.94e-10 | 61 |
electrically active cell | 6.94e-10 | 61 |
epithelial cell of nephron | 2.23e-07 | 15 |
kidney tubule cell | 3.68e-07 | 10 |
nephron tubule epithelial cell | 3.68e-07 | 10 |