FFCP PHASE1:Mm9::chr14:19725890..19725934,-: Difference between revisions
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{{FFCP|EntrezGene=218793|HGNC=|MCL_coexpression_id=664|UniProt=D3YXD1|association_with_transcript=0bp_to_ENSMUST00000151926_5end|description=CAGE_peak_3_at_Ube2e2_5end|id=chr14:19725890..19725934,-|ontology_enrichment_celltype=CL:0000055!1.08e-08!50;CL:0000393!2.68e-07!39;CL:0000211!2.68e-07!39;CL:0002319!4.24e-07!43;CL:0000117!5.09e-07!23;CL:0000337!5.09e-07!23;CL:0000221!7.22e-07!44;CL:0000133!7.22e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,6.19e-07,23;CL:0000337,6.19e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.63e-21!73;UBERON:0005743!2.63e-21!73;UBERON:0000073!2.50e-20!75;UBERON:0001016!2.50e-20!75;UBERON:0000033!2.14e-19!63;UBERON:0001049!3.66e-19!52;UBERON:0005068!3.66e-19!52;UBERON:0006241!3.66e-19!52;UBERON:0007135!3.66e-19!52;UBERON:0000955!3.15e-18!50;UBERON:0006238!3.15e-18!50;UBERON:0004121!8.72e-18!102;UBERON:0000924!8.72e-18!102;UBERON:0006601!8.72e-18!102;UBERON:0002616!1.04e-17!49;UBERON:0002346!1.76e-17!71;UBERON:0003075!1.76e-17!71;UBERON:0007284!1.76e-17!71;UBERON:0003056!1.85e-14!49;UBERON:0003080!1.14e-12!40;UBERON:0002780!4.79e-12!39;UBERON:0001890!4.79e-12!39;UBERON:0006240!4.79e-12!39;UBERON:0000025!7.82e-12!114;UBERON:0002020!1.66e-11!34;UBERON:0004111!1.66e-11!122;UBERON:0002791!3.89e-09!29;UBERON:0003528!3.89e-09!29;UBERON:0001893!3.89e-09!29;UBERON:0007811!9.89e-08!86;UBERON:0003076!1.44e-07!12;UBERON:0003057!1.44e-07!12;UBERON:0000153!5.20e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.23e-22,54;UBERON:0001017,1.46e-21,73;UBERON:0002346,4.79e-21,64;UBERON:0003075,4.79e-21,64;UBERON:0007284,4.79e-21,64;UBERON:0001049,1.55e-20,52;UBERON:0005068,1.55e-20,52;UBERON:0006241,1.55e-20,52;UBERON:0007135,1.55e-20,52;UBERON:0001016,3.10e-20,75;UBERON:0004121,5.20e-18,95;UBERON:0000924,5.20e-18,95;UBERON:0006601,5.20e-18,95;UBERON:0000955,2.47e-17,47;UBERON:0006238,2.47e-17,47;UBERON:0010371,6.66e-17,73;UBERON:0002616,9.31e-17,46;UBERON:0003056,4.31e-15,49;UBERON:0003080,3.73e-13,40;UBERON:0010314,6.41e-13,92;UBERON:0002780,1.88e-12,39;UBERON:0001890,1.88e-12,39;UBERON:0006240,1.88e-12,39;UBERON:0002020,8.79e-12,34;UBERON:0000025,6.57e-11,114;UBERON:0004111,3.65e-10,122;UBERON:0003528,4.09e-09,29;UBERON:0002791,4.09e-09,29;UBERON:0001893,4.09e-09,29;UBERON:0003076,1.52e-08,12;UBERON:0003057,1.52e-08,12;UBERON:0002021,3.30e-07,10;UBERON:0000411,3.30e-07,10;UBERON:0001950,3.30e-07,10|phase1_expression=1.76163731815273,0,0,0,0,0,0,0,0,0,0,0.0797721589953364,0,0,0,0,0,0,0.137114433605739,0,1.9559956734746,0,0,0,0.22940928106717,0.57423196411502,0,0,0,0.252030129759931,0.221730510655305,0,0,0,0.288851619751275,0.166234645358492,0.204169356262369,0,0,0,0,0,0,2.26614272356039,1.92616169317078,0.917733760808408,4.69434806608824,1.52617609466313,1.5378032791413,1.94429899074283,1.39986421625363,2.87505128729943,0,0,0,5.65970759279083,5.15760191889762,3.6097046459421,2.02316460859598,0.528990979272033,2.53532561402472,2.03306719241479,4.4464739805557,2.2497492932035,0,0,2.09720077362883,11.1423308543251,1.14058573539325,0.540023753326763,1.26194976810829,5.71301968807607,6.18431914664518,1.10241719293459,0.670918297127655,0.919218786610021,4.40463523997555,6.89511625660014,7.37311359629969,3.16527090552465,3.38504281328916,3.12548022334056,7.81712397203867,7.31591393041184,8.70950012327818,2.06240009831567,4.27115042397309,2.60959224155421,0.605809546665472,0.453429360640713,1.44932244350839,0.860423876981386,0,1.07940638327563,0,0,0.280888840263504,1.70430322578058,4.93593408745451,4.59341446863442,0.704217098883403,1.28326477414318,5.09610479413291,0,0.432982082022428,0.253359865475099,0,0.5709193985953,0.258937883647172,1.03909497345377,0.867426633830679,0.304465478312141,0.230615497256059,0.904335843315735,0.587943535678524,1.0053327306374,0.494389935468748,1.87979163995885,0.884610551949874,1.45590164952668,1.32504911076236,0.969750506270444,0,5.5628351432194,5.02672096352292,0.255457055208591,0,0,0.127070227073065,8.38827580667007,4.11750542536764,0.879580464790051,4.17178368461463,5.11430914660661,9.3504620051802,4.70499662896497,1.73126918545538,1.11966273549084,0.758168275301024,1.68353484709179,1.69156575851515,1.14951052216736,2.34080768746954,2.26057226753573,2.58538696775046,2.43416068541215,2.81105173679186,0.517406741478031,0.862271971731369,1.51284864134255,0.527853372491847,0.43839146485515,0.278047249225598,2.089512999133,1.02891068203972,0.995171334092466,0,0,0,0,0.469052119962192,0.36012412292203,0.710234206755631,0.787056926989615,0.925602677324269,0.930135779001631,0.804820204198858,0.467061369468678,0.822799249567402,0.820837320395476,0.810688095458557,1.02339991197733,2.19550115291051,1.20785776884335,3.57492912559016,1.3377599609307,0.330418782983798,0.264450566663544,0.853153002140936,0.464473343720877,0.902072229254653,1.00841762311671,1.33426826306922,1.14135375667535,0.474529061544512,1.15289268306808,0.251335208800269,0.596869416123452,0.38992817423824,0,0.864552199498777,0.398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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=218793 | |||
|HGNC= | |||
|MCL_coexpression_id=664 | |||
|TSSclassifier=NA | |||
|UniProt=D3YXD1 | |||
|association_with_transcript=0bp_to_ENSMUST00000151926_5end | |||
|cluster_id=chr14:19725890..19725934,- | |||
|description=CAGE_peak_3_at_Ube2e2_5end | |||
|id=chr14:19725890..19725934,- | |||
|ontology_enrichment_celltype=CL:0000055!1.08e-08!50;CL:0000393!2.68e-07!39;CL:0000211!2.68e-07!39;CL:0002319!4.24e-07!43;CL:0000117!5.09e-07!23;CL:0000337!5.09e-07!23;CL:0000221!7.22e-07!44;CL:0000133!7.22e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.19e-07,23;CL:0000337,6.19e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.63e-21!73;UBERON:0005743!2.63e-21!73;UBERON:0000073!2.50e-20!75;UBERON:0001016!2.50e-20!75;UBERON:0000033!2.14e-19!63;UBERON:0001049!3.66e-19!52;UBERON:0005068!3.66e-19!52;UBERON:0006241!3.66e-19!52;UBERON:0007135!3.66e-19!52;UBERON:0000955!3.15e-18!50;UBERON:0006238!3.15e-18!50;UBERON:0004121!8.72e-18!102;UBERON:0000924!8.72e-18!102;UBERON:0006601!8.72e-18!102;UBERON:0002616!1.04e-17!49;UBERON:0002346!1.76e-17!71;UBERON:0003075!1.76e-17!71;UBERON:0007284!1.76e-17!71;UBERON:0003056!1.85e-14!49;UBERON:0003080!1.14e-12!40;UBERON:0002780!4.79e-12!39;UBERON:0001890!4.79e-12!39;UBERON:0006240!4.79e-12!39;UBERON:0000025!7.82e-12!114;UBERON:0002020!1.66e-11!34;UBERON:0004111!1.66e-11!122;UBERON:0002791!3.89e-09!29;UBERON:0003528!3.89e-09!29;UBERON:0001893!3.89e-09!29;UBERON:0007811!9.89e-08!86;UBERON:0003076!1.44e-07!12;UBERON:0003057!1.44e-07!12;UBERON:0000153!5.20e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.23e-22,54;UBERON:0001017,1.46e-21,73;UBERON:0002346,4.79e-21,64;UBERON:0003075,4.79e-21,64;UBERON:0007284,4.79e-21,64;UBERON:0001049,1.55e-20,52;UBERON:0005068,1.55e-20,52;UBERON:0006241,1.55e-20,52;UBERON:0007135,1.55e-20,52;UBERON:0001016,3.10e-20,75;UBERON:0004121,5.20e-18,95;UBERON:0000924,5.20e-18,95;UBERON:0006601,5.20e-18,95;UBERON:0000955,2.47e-17,47;UBERON:0006238,2.47e-17,47;UBERON:0010371,6.66e-17,73;UBERON:0002616,9.31e-17,46;UBERON:0003056,4.31e-15,49;UBERON:0003080,3.73e-13,40;UBERON:0010314,6.41e-13,92;UBERON:0002780,1.88e-12,39;UBERON:0001890,1.88e-12,39;UBERON:0006240,1.88e-12,39;UBERON:0002020,8.79e-12,34;UBERON:0000025,6.57e-11,114;UBERON:0004111,3.65e-10,122;UBERON:0003528,4.09e-09,29;UBERON:0002791,4.09e-09,29;UBERON:0001893,4.09e-09,29;UBERON:0003076,1.52e-08,12;UBERON:0003057,1.52e-08,12;UBERON:0002021,3.30e-07,10;UBERON:0000411,3.30e-07,10;UBERON:0001950,3.30e-07,10 | |||
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| |||
|short_description=p3@Ube2e2 | |||
}} |
Latest revision as of 18:15, 25 September 2015
Short description: | p3@Ube2e2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ube2e2_5end |
Coexpression cluster: | MCL_coexpression_mm9:664 |
Association with transcript: | 0bp_to_ENSMUST00000151926_5end |
EntrezGene: | Ube2e2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.19e-07 | 23 |
neuroblast (sensu Vertebrata) | 6.19e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.23e-22 | 54 |
central nervous system | 1.46e-21 | 73 |
neurectoderm | 4.79e-21 | 64 |
neural plate | 4.79e-21 | 64 |
presumptive neural plate | 4.79e-21 | 64 |
neural tube | 1.55e-20 | 52 |
neural rod | 1.55e-20 | 52 |
future spinal cord | 1.55e-20 | 52 |
neural keel | 1.55e-20 | 52 |
nervous system | 3.10e-20 | 75 |
ectoderm-derived structure | 5.20e-18 | 95 |
ectoderm | 5.20e-18 | 95 |
presumptive ectoderm | 5.20e-18 | 95 |
brain | 2.47e-17 | 47 |
future brain | 2.47e-17 | 47 |
ecto-epithelium | 6.66e-17 | 73 |
regional part of brain | 9.31e-17 | 46 |
pre-chordal neural plate | 4.31e-15 | 49 |
anterior neural tube | 3.73e-13 | 40 |
structure with developmental contribution from neural crest | 6.41e-13 | 92 |
regional part of forebrain | 1.88e-12 | 39 |
forebrain | 1.88e-12 | 39 |
future forebrain | 1.88e-12 | 39 |
gray matter | 8.79e-12 | 34 |
tube | 6.57e-11 | 114 |
anatomical conduit | 3.65e-10 | 122 |
brain grey matter | 4.09e-09 | 29 |
regional part of telencephalon | 4.09e-09 | 29 |
telencephalon | 4.09e-09 | 29 |
posterior neural tube | 1.52e-08 | 12 |
chordal neural plate | 1.52e-08 | 12 |
occipital lobe | 3.30e-07 | 10 |
visual cortex | 3.30e-07 | 10 |
neocortex | 3.30e-07 | 10 |