FFCP PHASE1:Hg19::chr4:176708533..176708544,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2823 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4460 | |||
|TSSclassifier=strong | |||
|UniProt=D6RBM6 | |||
|association_with_transcript=0bp_to_ENST00000507520_5end | |||
|cluster_id=chr4:176708533..176708544,- | |||
|coexpression_cluster_id=C199 | |||
|description=CAGE_peak_28_at_GPM6A_5end | |||
|id=chr4:176708533..176708544,- | |||
|ontology_enrichment_celltype=CL:0000047!3.01e-15!8;CL:0002319!6.00e-13!25;CL:0000540!7.67e-08!6;CL:0000031!7.67e-08!6;CL:0000404!7.67e-08!6;CL:0002605!6.14e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.27e-37;2!CL:0002319;4.55e-24;25!CL:0000540;6.31e-13;6!CL:0000404;6.31e-13;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.15e-36,8;CL:0002319,4.46e-24,25;CL:0000540,6.12e-13,6;CL:0000031,6.12e-13,6;CL:0000404,6.12e-13,6;CL:0000133,1.31e-10,59;CL:0000221,1.03e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;6.31e-13;6!UBERON:0006238;1.24e-07;10!CL:0000133;4.65e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:154;2.27e-10;2!DOID:4236;2.27e-10;2!DOID:3093;4.57e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:154,2.07e-10,2;DOID:4236,2.07e-10,2;DOID:3093,4.57e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.20e-67!82;UBERON:0005743!3.16e-64!86;UBERON:0000073!1.47e-57!94;UBERON:0001016!1.47e-57!94;UBERON:0001893!2.74e-57!34;UBERON:0001869!1.48e-55!32;UBERON:0000955!6.64e-55!69;UBERON:0006238!6.64e-55!69;UBERON:0001049!8.91e-55!57;UBERON:0005068!8.91e-55!57;UBERON:0006241!8.91e-55!57;UBERON:0007135!8.91e-55!57;UBERON:0002791!1.06e-53!33;UBERON:0002020!3.07e-52!34;UBERON:0003528!3.07e-52!34;UBERON:0002616!9.89e-49!59;UBERON:0002780!7.05e-47!41;UBERON:0001890!7.05e-47!41;UBERON:0006240!7.05e-47!41;UBERON:0000956!1.26e-46!25;UBERON:0000203!1.26e-46!25;UBERON:0003080!1.14e-45!42;UBERON:0001950!1.84e-45!20;UBERON:0002619!3.27e-41!22;UBERON:0003075!4.40e-37!86;UBERON:0007284!4.40e-37!86;UBERON:0002346!3.65e-35!90;UBERON:0003056!4.88e-33!61;UBERON:0000033!1.64e-32!123;UBERON:0004121!5.90e-31!169;UBERON:0000153!1.08e-30!129;UBERON:0007811!1.08e-30!129;UBERON:0000924!4.49e-30!173;UBERON:0006601!4.49e-30!173;UBERON:0001871!4.87e-20!7;UBERON:0007023!1.25e-18!115;UBERON:0000200!1.61e-18!6;UBERON:0001872!7.17e-15!5;UBERON:0000025!5.28e-13!194;UBERON:0002420!2.09e-12!9;UBERON:0007245!2.09e-12!9;UBERON:0010009!2.09e-12!9;UBERON:0010011!2.09e-12!9;UBERON:0000454!2.09e-12!9;UBERON:0003076!2.01e-10!15;UBERON:0003057!2.01e-10!15;UBERON:0001870!2.79e-10!2;UBERON:0001876!3.21e-10!2;UBERON:0000064!8.37e-10!219;UBERON:0004733!2.59e-09!12;UBERON:0002028!2.59e-09!12;UBERON:0007277!2.59e-09!12;UBERON:0004111!3.03e-09!241;UBERON:0000349!1.24e-08!5;UBERON:0004732!1.42e-08!13;UBERON:0002680!2.09e-08!9;UBERON:0001895!2.09e-08!9;UBERON:0010092!2.09e-08!9;UBERON:0002308!3.27e-08!9;UBERON:0000125!3.27e-08!9;UBERON:0000475!9.17e-08!365;UBERON:0000477!1.46e-07!286;UBERON:0000988!5.96e-07!3;UBERON:0002771!7.81e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;2.71e-08;20!UBERON:0001016;8.18e-08;83!UBERON:0002619;1.27e-07;22!UBERON:0002114;3.06e-07;2!UBERON:0000922;6.33e-07;49!UBERON:0000956;8.37e-07;25!UBERON:0000203;8.37e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.67e-17,81;UBERON:0001016,2.45e-15,89;UBERON:0001950,2.85e-08,20;UBERON:0004121,8.24e-08,171;UBERON:0000924,8.24e-08,171;UBERON:0006601,8.24e-08,171;UBERON:0002619,1.33e-07,22;UBERON:0011216,2.89e-07,223;UBERON:0002114,2.97e-07,2;UBERON:0000956,8.71e-07,25;UBERON:0000203,8.71e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.31960861178188,7.8083912314573,0.773288812777695,1.34013012267479,2.55175500661265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0.278304294485554,0,0,0,0,0,0,0,0,0,2.95162491386597,0,0,0,0.552896299656123,0.886642856860642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0.182454789215666,0,0,0,0,1.22429104652196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0,0,6.52340189153347,9.41425616810999,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303747783290123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0.250381861413,0,0,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.0642292250964595,0,0,0,1.26035848110859,0.0691572524642179,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202612753855184,0,0.413373593002368,0.19024743058172,2.7348740450911,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.131545547125698,0,0,0,0.471346769748006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0.203974470572744,1.30905207102113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p28@GPM6A | |||
}} |
Latest revision as of 21:44, 16 September 2015
Short description: | p28@GPM6A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_GPM6A_5end |
Coexpression cluster: | C199_glioblastoma_B_osteosarcoma_Fibroblast_heart_rhabdomyosarcoma_myxofibrosarcoma |
Association with transcript: | 0bp_to_ENST00000507520_5end |
EntrezGene: | GPM6A |
HGNC: | 4460 |
UniProt: | D6RBM6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.15e-36 | 8 |
neural cell | 4.46e-24 | 25 |
neuron | 6.12e-13 | 6 |
neuroblast | 6.12e-13 | 6 |
electrically signaling cell | 6.12e-13 | 6 |
neurectodermal cell | 1.31e-10 | 59 |
ectodermal cell | 1.03e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.67e-17 | 81 |
nervous system | 2.45e-15 | 89 |
neocortex | 2.85e-08 | 20 |
ectoderm-derived structure | 8.24e-08 | 171 |
ectoderm | 8.24e-08 | 171 |
presumptive ectoderm | 8.24e-08 | 171 |
regional part of cerebral cortex | 1.33e-07 | 22 |
organ system subdivision | 2.89e-07 | 223 |
duodenum | 2.97e-07 | 2 |
cerebral cortex | 8.71e-07 | 25 |
pallium | 8.71e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 2.07e-10 | 2 |
carcinosarcoma | 2.07e-10 | 2 |
nervous system cancer | 4.57e-07 | 11 |