FFCP PHASE1:Mm9::chr15:84818452..84818461,-: Difference between revisions
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{{FFCP|EntrezGene=223739|HGNC=|UniProt=Q3UE31,E9Q1W1|association_with_transcript=-22bp_to_ENSMUST00000047144,ENSMUST00000143585_5end|description=CAGE_peak_3_at_5031439G07Rik_5end|id=chr15:84818452..84818461,-|ontology_enrichment_celltype=CL:0000221!1.17e-10!44;CL:0000133!1.17e-10!44;CL:0000117!1.83e-10!23;CL:0000337!1.83e-10!23;CL:0002319!2.61e-10!43;CL:0000055!1.87e-09!50;CL:0000540!4.62e-09!33;CL:0000047!4.62e-09!33;CL:0000031!4.62e-09!33;CL:0000404!4.62e-09!33;CL:0000393!7.97e-09!39;CL:0000211!7.97e-09!39|ontology_enrichment_celltype_v019_2=CL:0002319,1.92e-17,43;CL:0000117,4.33e-17,23;CL:0000337,4.33e-17,23;CL:0000221,7.04e-17,44;CL:0000133,7.04e-17,44;CL:0000540,9.45e-12,33;CL:0000047,9.45e-12,33;CL:0000031,9.45e-12,33;CL:0000404,9.45e-12,33;CL:0000393,3.51e-09,39;CL:0000211,3.51e-09,39;CL:0002321,4.96e-09,70;CL:0000333,6.05e-07,10;CL:0000095,6.05e-07,10;CL:0000243,6.05e-07,10;CL:0000123,6.05e-07,10;CL:0000125,6.05e-07,10;CL:0000030,6.05e-07,10;CL:0000339,6.05e-07,10;CL:0002194,9.36e-07,4;CL:0000766,9.36e-07,4;CL:0000234,9.36e-07,4;CL:0000576,9.36e-07,4;CL:0000235,9.36e-07,4;CL:0000864,9.36e-07,4;CL:0002009,9.36e-07,4;CL:0000040,9.36e-07,4;CL:0000559,9.36e-07,4|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.03e-13!75;UBERON:0001016!1.03e-13!75;UBERON:0004121!5.68e-13!102;UBERON:0000924!5.68e-13!102;UBERON:0006601!5.68e-13!102;UBERON:0001017!1.16e-12!73;UBERON:0005743!1.16e-12!73;UBERON:0000033!6.25e-10!63;UBERON:0001049!6.30e-09!52;UBERON:0005068!6.30e-09!52;UBERON:0006241!6.30e-09!52;UBERON:0007135!6.30e-09!52;UBERON:0002346!8.44e-09!71;UBERON:0003075!8.44e-09!71;UBERON:0007284!8.44e-09!71;UBERON:0000955!5.78e-08!50;UBERON:0006238!5.78e-08!50;UBERON:0002616!1.15e-07!49;UBERON:0003056!4.03e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.02e-18,75;UBERON:0001017,5.96e-16,73;UBERON:0004121,3.08e-15,95;UBERON:0000924,3.08e-15,95;UBERON:0006601,3.08e-15,95;UBERON:0000073,2.78e-12,54;UBERON:0001049,9.74e-12,52;UBERON:0005068,9.74e-12,52;UBERON:0006241,9.74e-12,52;UBERON:0007135,9.74e-12,52;UBERON:0002346,2.50e-11,64;UBERON:0003075,2.50e-11,64;UBERON:0007284,2.50e-11,64;UBERON:0002020,2.54e-09,34;UBERON:0010371,4.90e-09,73;UBERON:0002616,1.25e-07,46;UBERON:0000955,2.29e-07,47;UBERON:0006238,2.29e-07,47;UBERON:0003076,2.42e-07,12;UBERON:0003057,2.42e-07,12;UBERON:0002240,2.71e-07,6;UBERON:0005174,2.71e-07,6;UBERON:0001137,2.71e-07,6;UBERON:0003056,4.39e-07,49;UBERON:0002780,8.88e-07,39;UBERON:0001890,8.88e-07,39;UBERON:0006240,8.88e-07,39|phase1_expression=0.80074423552397,0,0.909998478779072,0,0,0.503637815735669,0.467225281191051,0.258246646883153,0.140788722151667,0.234064526321993,0,0.0797721589953364,0.342401459862411,0,0,0,0,0.315462165358238,0.274228867211478,0.42438965179803,0.510259740906419,0.695036658406197,0.261199789138935,0.159992422793407,0.68822784320151,0.57423196411502,0,0.215471232685889,0.380046838912748,0.252030129759931,0,0,0,0,0,0,0.204169356262369,1.25559489221072,0.7813353445238,0,0.588231488031014,0.683045484958446,0.971020706062307,0.251793635951155,0.405507724878058,0.734187008646726,0,1.30815093828268,1.5378032791413,0.194429899074283,1.25987779462826,0,0.167782606057736,0,0.672187598284928,0.514518872071894,0.85960031981627,0.515672092277442,1.82084814773638,3.1739458756322,5.07065122804943,0.677689064138264,1.77858959222228,1.7997994345628,0,1.4209602298922,2.69640099466564,1.15265491596466,0.622137673850866,1.35005938331691,2.10324961351382,0.571301968807607,1.76694832761291,0.857435594504678,1.53352753629178,0.919218786610021,2.20231761998777,1.53224805702225,0.921639199537461,2.2420668914133,2.56165402086747,1.04182674111352,1.11673199600552,0,1.22238598221448,2.65165726926301,2.27794689278565,1.86399445825301,1.74170244666323,2.04043212288321,0.579728977403356,0,0.679971333707751,0,0,0,0.561777680527007,0.681721290312231,0.259786004602869,0.35333957451034,0.985903938436763,0,2.54805239706646,0,0,0,0,0.5709193985953,0,0.29688427812965,0.346970653532272,0,0.461230994512117,0.452167921657868,0.23517741427141,0.879666139307728,0.741584903203122,0.433798070759735,0.884610551949874,0.647067399789637,0.220841518460394,0.484875253135222,1.86391761218122,0.585561594023094,1.04723353406728,0.255457055208591,0.239630249011841,0,0.127070227073065,0.748953197024114,0.457500602818626,1.38219787324151,0.521472960576829,0.511430914660661,0.62336413367868,0.973447578406546,0.712875546952214,0.497627882440372,0.505445516867349,1.68353484709179,0.390361328888111,2.06911893990126,1.0803727788321,0.150704817835715,0.748401490664606,0.512454881139399,0.843315521037559,0.776110112217047,0.431135985865684,0.945530400839096,0.351902248327898,1.09597866213787,0.556094498451196,0.348252166522167,0.61734640922383,0.995171334092466,0,0.257347907114715,0.284163499395593,2.07125772535502,0.234526059981096,0.180062061461015,0.473489471170421,0,0.617068451549513,0,0.268273401399619,0.233530684734339,0.16455984991348,0.164167464079095,0.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=223739 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q3UE31,E9Q1W1 | |||
|association_with_transcript=-22bp_to_ENSMUST00000047144,ENSMUST00000143585_5end | |||
|cluster_id=chr15:84818452..84818461,- | |||
|description=CAGE_peak_3_at_5031439G07Rik_5end | |||
|id=chr15:84818452..84818461,- | |||
|ontology_enrichment_celltype=CL:0000221!1.17e-10!44;CL:0000133!1.17e-10!44;CL:0000117!1.83e-10!23;CL:0000337!1.83e-10!23;CL:0002319!2.61e-10!43;CL:0000055!1.87e-09!50;CL:0000540!4.62e-09!33;CL:0000047!4.62e-09!33;CL:0000031!4.62e-09!33;CL:0000404!4.62e-09!33;CL:0000393!7.97e-09!39;CL:0000211!7.97e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.92e-17,43;CL:0000117,4.33e-17,23;CL:0000337,4.33e-17,23;CL:0000221,7.04e-17,44;CL:0000133,7.04e-17,44;CL:0000540,9.45e-12,33;CL:0000047,9.45e-12,33;CL:0000031,9.45e-12,33;CL:0000404,9.45e-12,33;CL:0000393,3.51e-09,39;CL:0000211,3.51e-09,39;CL:0002321,4.96e-09,70;CL:0000333,6.05e-07,10;CL:0000095,6.05e-07,10;CL:0000243,6.05e-07,10;CL:0000123,6.05e-07,10;CL:0000125,6.05e-07,10;CL:0000030,6.05e-07,10;CL:0000339,6.05e-07,10;CL:0002194,9.36e-07,4;CL:0000766,9.36e-07,4;CL:0000234,9.36e-07,4;CL:0000576,9.36e-07,4;CL:0000235,9.36e-07,4;CL:0000864,9.36e-07,4;CL:0002009,9.36e-07,4;CL:0000040,9.36e-07,4;CL:0000559,9.36e-07,4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.03e-13!75;UBERON:0001016!1.03e-13!75;UBERON:0004121!5.68e-13!102;UBERON:0000924!5.68e-13!102;UBERON:0006601!5.68e-13!102;UBERON:0001017!1.16e-12!73;UBERON:0005743!1.16e-12!73;UBERON:0000033!6.25e-10!63;UBERON:0001049!6.30e-09!52;UBERON:0005068!6.30e-09!52;UBERON:0006241!6.30e-09!52;UBERON:0007135!6.30e-09!52;UBERON:0002346!8.44e-09!71;UBERON:0003075!8.44e-09!71;UBERON:0007284!8.44e-09!71;UBERON:0000955!5.78e-08!50;UBERON:0006238!5.78e-08!50;UBERON:0002616!1.15e-07!49;UBERON:0003056!4.03e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.02e-18,75;UBERON:0001017,5.96e-16,73;UBERON:0004121,3.08e-15,95;UBERON:0000924,3.08e-15,95;UBERON:0006601,3.08e-15,95;UBERON:0000073,2.78e-12,54;UBERON:0001049,9.74e-12,52;UBERON:0005068,9.74e-12,52;UBERON:0006241,9.74e-12,52;UBERON:0007135,9.74e-12,52;UBERON:0002346,2.50e-11,64;UBERON:0003075,2.50e-11,64;UBERON:0007284,2.50e-11,64;UBERON:0002020,2.54e-09,34;UBERON:0010371,4.90e-09,73;UBERON:0002616,1.25e-07,46;UBERON:0000955,2.29e-07,47;UBERON:0006238,2.29e-07,47;UBERON:0003076,2.42e-07,12;UBERON:0003057,2.42e-07,12;UBERON:0002240,2.71e-07,6;UBERON:0005174,2.71e-07,6;UBERON:0001137,2.71e-07,6;UBERON:0003056,4.39e-07,49;UBERON:0002780,8.88e-07,39;UBERON:0001890,8.88e-07,39;UBERON:0006240,8.88e-07,39 | |||
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| |||
|short_description=p3@5031439G07Rik | |||
}} |
Latest revision as of 06:09, 27 September 2015
Short description: | p3@5031439G07Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_5031439G07Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | -22bp_to_ENSMUST00000047144, ENSMUST00000143585_5end |
EntrezGene: | 5031439G07Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.92e-17 | 43 |
CNS neuron (sensu Vertebrata) | 4.33e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.33e-17 | 23 |
ectodermal cell | 7.04e-17 | 44 |
neurectodermal cell | 7.04e-17 | 44 |
neuron | 9.45e-12 | 33 |
neuronal stem cell | 9.45e-12 | 33 |
neuroblast | 9.45e-12 | 33 |
electrically signaling cell | 9.45e-12 | 33 |
electrically responsive cell | 3.51e-09 | 39 |
electrically active cell | 3.51e-09 | 39 |
embryonic cell | 4.96e-09 | 70 |
migratory neural crest cell | 6.05e-07 | 10 |
neuron associated cell | 6.05e-07 | 10 |
glial cell (sensu Vertebrata) | 6.05e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 6.05e-07 | 10 |
glial cell | 6.05e-07 | 10 |
glioblast | 6.05e-07 | 10 |
glioblast (sensu Vertebrata) | 6.05e-07 | 10 |
monopoietic cell | 9.36e-07 | 4 |
myeloid leukocyte | 9.36e-07 | 4 |
phagocyte | 9.36e-07 | 4 |
monocyte | 9.36e-07 | 4 |
macrophage | 9.36e-07 | 4 |
tissue-resident macrophage | 9.36e-07 | 4 |
macrophage dendritic cell progenitor | 9.36e-07 | 4 |
monoblast | 9.36e-07 | 4 |
promonocyte | 9.36e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.02e-18 | 75 |
central nervous system | 5.96e-16 | 73 |
ectoderm-derived structure | 3.08e-15 | 95 |
ectoderm | 3.08e-15 | 95 |
presumptive ectoderm | 3.08e-15 | 95 |
regional part of nervous system | 2.78e-12 | 54 |
neural tube | 9.74e-12 | 52 |
neural rod | 9.74e-12 | 52 |
future spinal cord | 9.74e-12 | 52 |
neural keel | 9.74e-12 | 52 |
neurectoderm | 2.50e-11 | 64 |
neural plate | 2.50e-11 | 64 |
presumptive neural plate | 2.50e-11 | 64 |
gray matter | 2.54e-09 | 34 |
ecto-epithelium | 4.90e-09 | 73 |
regional part of brain | 1.25e-07 | 46 |
brain | 2.29e-07 | 47 |
future brain | 2.29e-07 | 47 |
posterior neural tube | 2.42e-07 | 12 |
chordal neural plate | 2.42e-07 | 12 |
spinal cord | 2.71e-07 | 6 |
dorsal region element | 2.71e-07 | 6 |
dorsum | 2.71e-07 | 6 |
pre-chordal neural plate | 4.39e-07 | 49 |
regional part of forebrain | 8.88e-07 | 39 |
forebrain | 8.88e-07 | 39 |
future forebrain | 8.88e-07 | 39 |