FFCP PHASE1:Hg19::chr4:83934078..83934108,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=132660 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25397 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000505397_5end | |||
|cluster_id=chr4:83934078..83934108,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_LIN54_5end | |||
|id=chr4:83934078..83934108,- | |||
|ontology_enrichment_celltype=CL:0000763!2.00e-23!112;CL:0000049!2.00e-23!112;CL:0002032!4.65e-18!165;CL:0000837!4.65e-18!165;CL:0000037!2.50e-17!172;CL:0000566!2.50e-17!172;CL:0000988!4.78e-15!182;CL:0000766!1.11e-13!76;CL:0000557!6.95e-12!71;CL:0000839!1.78e-11!70;CL:0002009!9.53e-11!65;CL:0002194!7.37e-10!63;CL:0000576!7.37e-10!63;CL:0000040!7.37e-10!63;CL:0000559!7.37e-10!63;CL:0000738!2.70e-09!140;CL:0002031!2.26e-08!124;CL:0000860!4.31e-07!45 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,7.11e-24,108;CL:0000049,7.11e-24,108;CL:0002032,4.14e-18,161;CL:0000837,4.14e-18,161;CL:0000037,1.71e-17,168;CL:0000988,3.15e-15,177;CL:0000766,3.34e-14,72;CL:0000557,2.62e-12,67;CL:0000839,7.10e-12,66;CL:0002009,4.03e-11,61;CL:0002194,3.53e-10,59;CL:0000576,3.53e-10,59;CL:0000040,3.53e-10,59;CL:0000559,3.53e-10,59;CL:0000738,2.46e-09,136;CL:0002031,2.04e-08,120;CL:0000473,1.06e-07,48;CL:0000234,1.06e-07,48 | |||
|ontology_enrichment_development_v019=CL:0000049;5.06e-07;108 | |||
|ontology_enrichment_disease=DOID:2531!7.06e-17!51;DOID:0060083!7.06e-17!51;DOID:1240!1.70e-13!39;DOID:0050686!6.39e-13!137;DOID:162!5.64e-12!235;DOID:14566!1.87e-11!239;DOID:8692!3.18e-10!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;2.63e-11;39!DOID:2531;6.69e-11;51!DOID:0060083;6.69e-11;51!DOID:8692;9.45e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.89e-17,51;DOID:0060083,3.89e-17,51;DOID:1240,1.03e-13,39;DOID:0050686,2.71e-12,137;DOID:162,9.68e-11,235;DOID:8692,2.60e-10,31;DOID:14566,3.90e-10,239 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.81e-15!102;UBERON:0003061!2.81e-15!102;UBERON:0002193!3.84e-13!112;UBERON:0001474!3.32e-11!86;UBERON:0002371!4.98e-11!80;UBERON:0004765!5.66e-09!101;UBERON:0001434!5.66e-09!101;UBERON:0002405!8.85e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.77e-15,98;UBERON:0003061,1.77e-15,98;UBERON:0002193,1.59e-13,108;UBERON:0001474,2.54e-11,82;UBERON:0002371,4.29e-11,76;UBERON:0002405,6.07e-11,93;UBERON:0004765,6.24e-08,90;UBERON:0001434,9.61e-08,100 | |||
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| |||
|short_description=p3@LIN54 | |||
}} |
Latest revision as of 01:37, 19 September 2015
Short description: | p3@LIN54 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LIN54_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000505397_5end |
EntrezGene: | LIN54 |
HGNC: | 25397 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 7.11e-24 | 108 |
common myeloid progenitor | 7.11e-24 | 108 |
hematopoietic oligopotent progenitor cell | 4.14e-18 | 161 |
hematopoietic multipotent progenitor cell | 4.14e-18 | 161 |
hematopoietic stem cell | 1.71e-17 | 168 |
hematopoietic cell | 3.15e-15 | 177 |
myeloid leukocyte | 3.34e-14 | 72 |
granulocyte monocyte progenitor cell | 2.62e-12 | 67 |
myeloid lineage restricted progenitor cell | 7.10e-12 | 66 |
macrophage dendritic cell progenitor | 4.03e-11 | 61 |
monopoietic cell | 3.53e-10 | 59 |
monocyte | 3.53e-10 | 59 |
monoblast | 3.53e-10 | 59 |
promonocyte | 3.53e-10 | 59 |
leukocyte | 2.46e-09 | 136 |
hematopoietic lineage restricted progenitor cell | 2.04e-08 | 120 |
defensive cell | 1.06e-07 | 48 |
phagocyte | 1.06e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.77e-15 | 98 |
blood island | 1.77e-15 | 98 |
hemolymphoid system | 1.59e-13 | 108 |
bone element | 2.54e-11 | 82 |
bone marrow | 4.29e-11 | 76 |
immune system | 6.07e-11 | 93 |
skeletal element | 6.24e-08 | 90 |
skeletal system | 9.61e-08 | 100 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.89e-17 | 51 |
immune system cancer | 3.89e-17 | 51 |
leukemia | 1.03e-13 | 39 |
organ system cancer | 2.71e-12 | 137 |
cancer | 9.68e-11 | 235 |
myeloid leukemia | 2.60e-10 | 31 |
disease of cellular proliferation | 3.90e-10 | 239 |