FFCP PHASE1:Hg19::chr5:179233376..179233428,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8878 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11280 | |||
|TSSclassifier=strong | |||
|UniProt=E9PFW8,Q13501 | |||
|association_with_transcript=0bp_to_ENST00000376929,ENST00000506042,ENST00000514093,NM_001142298,uc011dgr.1_5end | |||
|cluster_id=chr5:179233376..179233428,+ | |||
|description=CAGE_peak_2_at_SQSTM1_5end | |||
|id=chr5:179233376..179233428,+ | |||
|ontology_enrichment_celltype=CL:1000497!1.07e-07!18;CL:0002518!1.07e-07!18;CL:1000449!2.57e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.42e-07;17!CL:0002518;2.42e-07;17!CL:1000449;5.30e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.06e-07,17;CL:0002518,2.06e-07,17;CL:1000449,4.92e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.13e-10!32;UBERON:0002619!2.17e-10!22;UBERON:0000956!2.38e-10!25;UBERON:0000203!2.38e-10!25;UBERON:0001950!1.40e-09!20;UBERON:0000064!3.49e-09!219;UBERON:0002020!4.37e-09!34;UBERON:0003528!4.37e-09!34;UBERON:0001893!5.16e-09!34;UBERON:0000955!7.10e-09!69;UBERON:0006238!7.10e-09!69;UBERON:0005743!1.12e-08!86;UBERON:0002791!1.38e-08!33;UBERON:0001017!4.19e-08!82;UBERON:0000073!1.65e-07!94;UBERON:0001016!1.65e-07!94;UBERON:0002616!1.89e-07!59;UBERON:0004211!2.57e-07!16;UBERON:0001285!2.57e-07!16;UBERON:0007684!2.57e-07!16;UBERON:0003220!2.57e-07!16;UBERON:0004208!2.57e-07!16;UBERON:0001049!4.69e-07!57;UBERON:0005068!4.69e-07!57;UBERON:0006241!4.69e-07!57;UBERON:0007135!4.69e-07!57;UBERON:0006555!5.74e-07!17;UBERON:0005103!5.74e-07!17;UBERON:0000083!5.74e-07!17;UBERON:0009201!5.74e-07!17;UBERON:0004819!5.74e-07!17;UBERON:0006553!5.74e-07!17;UBERON:0003074!5.74e-07!17;UBERON:0003060!5.74e-07!17;UBERON:0003080!7.48e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.92e-10;25!UBERON:0000203;1.92e-10;25!UBERON:0002619;2.07e-10;22!UBERON:0001869;8.09e-10;32!UBERON:0001950;1.29e-09;20!UBERON:0002791;1.16e-08;32!UBERON:0003528;2.99e-08;34!UBERON:0002020;2.99e-08;34!UBERON:0001893;3.87e-08;34!UBERON:0006555;5.30e-07;15!UBERON:0004819;5.30e-07;15!UBERON:0001285;5.30e-07;15!UBERON:0007684;5.30e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.13e-10,32;UBERON:0002619,2.17e-10,22;UBERON:0000956,2.38e-10,25;UBERON:0000203,2.38e-10,25;UBERON:0001950,1.40e-09,20;UBERON:0002791,2.11e-09,32;UBERON:0003528,4.37e-09,34;UBERON:0002020,4.37e-09,34;UBERON:0001893,5.16e-09,34;UBERON:0000955,1.45e-08,68;UBERON:0006238,1.45e-08,68;UBERON:0001017,8.09e-08,81;UBERON:0000073,2.02e-07,53;UBERON:0002616,2.02e-07,53;UBERON:0004211,4.92e-07,15;UBERON:0009773,4.92e-07,15;UBERON:0001231,4.92e-07,15;UBERON:0001285,4.92e-07,15;UBERON:0007684,4.92e-07,15;UBERON:0004208,4.92e-07,15;UBERON:0001049,9.34e-07,56;UBERON:0005068,9.34e-07,56;UBERON:0006241,9.34e-07,56;UBERON:0007135,9.34e-07,56 | |||
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| |||
|short_description=p2@SQSTM1 | |||
}} |
Latest revision as of 09:26, 17 September 2015
Short description: | p2@SQSTM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SQSTM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000376929, ENST00000506042, ENST00000514093, NM_001142298, uc011dgr.1_5end |
EntrezGene: | SQSTM1 |
HGNC: | 11280 |
UniProt: | E9PFW8Q13501 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.06e-07 | 17 |
kidney epithelial cell | 2.06e-07 | 17 |
epithelial cell of nephron | 4.92e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.13e-10 | 32 |
regional part of cerebral cortex | 2.17e-10 | 22 |
cerebral cortex | 2.38e-10 | 25 |
pallium | 2.38e-10 | 25 |
neocortex | 1.40e-09 | 20 |
regional part of telencephalon | 2.11e-09 | 32 |
brain grey matter | 4.37e-09 | 34 |
gray matter | 4.37e-09 | 34 |
telencephalon | 5.16e-09 | 34 |
brain | 1.45e-08 | 68 |
future brain | 1.45e-08 | 68 |
central nervous system | 8.09e-08 | 81 |
regional part of nervous system | 2.02e-07 | 53 |
regional part of brain | 2.02e-07 | 53 |
nephron epithelium | 4.92e-07 | 15 |
renal tubule | 4.92e-07 | 15 |
nephron tubule | 4.92e-07 | 15 |
nephron | 4.92e-07 | 15 |
uriniferous tubule | 4.92e-07 | 15 |
nephrogenic mesenchyme | 4.92e-07 | 15 |
neural tube | 9.34e-07 | 56 |
neural rod | 9.34e-07 | 56 |
future spinal cord | 9.34e-07 | 56 |
neural keel | 9.34e-07 | 56 |