FFCP PHASE1:Mm9::chr10:115910601..115910617,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:115910601..115910617,-
|short_description=p5@Kcnmb4
|description=CAGE_peak_5_at_Kcnmb4_5end
|association_with_transcript=-22bp_to_NM_021452,uc007hbw.1,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=58802 | |EntrezGene=58802 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JIN6 | |UniProt=Q9JIN6 | ||
|association_with_transcript=-22bp_to_NM_021452,uc007hbw.1,uc007hby.1_5end | |||
|cluster_id=chr10:115910601..115910617,- | |||
|description=CAGE_peak_5_at_Kcnmb4_5end | |||
|id=chr10:115910601..115910617,- | |||
|ontology_enrichment_celltype=CL:0000117!6.52e-09!23;CL:0000337!6.52e-09!23;CL:0000540!2.67e-08!33;CL:0000047!2.67e-08!33;CL:0000031!2.67e-08!33;CL:0000404!2.67e-08!33;CL:0000221!3.31e-07!44;CL:0000133!3.31e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.54e-16,23;CL:0000337,4.54e-16,23;CL:0000540,1.30e-12,33;CL:0000047,1.30e-12,33;CL:0000031,1.30e-12,33;CL:0000404,1.30e-12,33;CL:0002612,1.34e-11,3;CL:0000221,1.51e-10,44;CL:0000133,1.51e-10,44;CL:0000393,2.55e-10,39;CL:0000211,2.55e-10,39;CL:0002319,3.79e-09,43;CL:0002611,1.15e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.80e-14!75;UBERON:0001016!9.80e-14!75;UBERON:0001017!1.85e-13!73;UBERON:0005743!1.85e-13!73;UBERON:0000153!1.64e-12!94;UBERON:0004121!2.27e-12!102;UBERON:0000924!2.27e-12!102;UBERON:0006601!2.27e-12!102;UBERON:0002346!4.12e-12!71;UBERON:0003075!4.12e-12!71;UBERON:0007284!4.12e-12!71;UBERON:0001049!7.50e-11!52;UBERON:0005068!7.50e-11!52;UBERON:0006241!7.50e-11!52;UBERON:0007135!7.50e-11!52;UBERON:0000033!2.08e-10!63;UBERON:0007811!2.21e-10!86;UBERON:0003056!5.40e-10!49;UBERON:0002020!1.55e-09!34;UBERON:0002780!2.46e-09!39;UBERON:0001890!2.46e-09!39;UBERON:0006240!2.46e-09!39;UBERON:0000955!5.31e-09!50;UBERON:0006238!5.31e-09!50;UBERON:0003080!8.25e-09!40;UBERON:0002616!1.47e-08!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,1.29e-17,5;UBERON:0002315,1.29e-17,5;UBERON:0002020,1.29e-16,34;UBERON:0002240,1.23e-14,6;UBERON:0005174,1.23e-14,6;UBERON:0001137,1.23e-14,6;UBERON:0001049,2.33e-13,52;UBERON:0005068,2.33e-13,52;UBERON:0006241,2.33e-13,52;UBERON:0007135,2.33e-13,52;UBERON:0001017,7.26e-13,73;UBERON:0000073,9.56e-13,54;UBERON:0001016,2.01e-12,75;UBERON:0002257,1.34e-11,3;UBERON:0002346,2.94e-10,64;UBERON:0003075,2.94e-10,64;UBERON:0007284,2.94e-10,64;UBERON:0004121,3.11e-10,95;UBERON:0000924,3.11e-10,95;UBERON:0006601,3.11e-10,95;UBERON:0010371,6.51e-10,73;UBERON:0002780,3.54e-08,39;UBERON:0001890,3.54e-08,39;UBERON:0006240,3.54e-08,39;UBERON:0003080,6.33e-08,40;UBERON:0003528,1.13e-07,29;UBERON:0002791,1.13e-07,29;UBERON:0001893,1.13e-07,29;UBERON:0002256,1.15e-07,2;UBERON:0010314,3.58e-07,92;UBERON:0003076,3.63e-07,12;UBERON:0003057,3.63e-07,12 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0.281577444303333,0.234064526321993,0,0,0.342401459862411,0.174840804837995,0,0,0,0,0,0,2.8064285749853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61853168687678,0.528990979272033,2.53532561402472,0.338844532069132,0,0,0,0,0.898800331555214,0.768436610643109,0.414758449233911,0.135005938331691,1.26194976810829,2.28520787523043,1.54607978666129,0.61245399607477,0.670918297127655,1.83843757322004,0,0.383062014255563,0.46081959976873,1.71452174049252,1.73826522844578,0,0,0,0.916789486660861,2.94628585473668,3.27454865837937,4.28718725398191,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.140444420131752,0,0,0,1.69012103732017,0,0,0,0,0,0,0.45673551887624,0,0,0.693941307064543,0,0.461230994512117,0.452167921657868,0,0,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0,0,1.13088916901578,0.173824320192276,1.02286182932132,0,0.162241263067758,0.203678727700633,0.124406970610093,0.252722758433675,0,0,0.689706313300419,0.540186389416048,0.60281927134286,0.204109497453984,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.567318240503458,0.703804496655795,1.09597866213787,0.556094498451196,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,0,0.938104239924385,0,0,0,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0.420579897128254,0.411618449517138,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0,0,0.380451252225118,0,0.164698954724011,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0.631016438832513,0,0.861693590931196,0,1.33679204449436,0.566153061577665,0,0,0,0.642642632843614,0,0.35613120733451,0.162886959353576,0,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0.36012218806262,0.646793418913773,0.214337035031592,0.709360934569094,1.78368817602071,1.64549020602121,0.913394847343798,0,0,0,0,0,0.120625849856312,0,0.164140899745061,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0,0,0,0,24.8024893021044,0.598066184175915,1.32366792365678,0.388902376688095,0.774958940866387,0.506868376472335,0.117357238645754,0.2604087696879,0.104859344425711,8.45544422891021,10.9451402377989,0,0.405450430580328,0.205421914329655,0.129920822977795,0.179026695667481,0.39736270956253,0.600977247599844,0.147689527174577,0,0,0.100826185136841,0.38983152295901,0.384847366561318,0.116876902181569,0,0,0,0,0.19318959403219,0,0,0,0,1.6942555278512,1.38097570952153,0,1.89038500578056,0.685082519770642,0.755393897389701,0,0.45032120322422,0.453142408984205,1.03552062350364,0.103787347584177,0.399024873401031,0.512200817262403,0.243106717068294,0.209613162627982,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0.50695859978048,0.377252682772152,0.280924522409647,0.128050304809739,0.287177344778066,0,0.463537303779422,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.436039249896986,0.282328141245992,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.830445126869219,0.394017929502254,0.818462086339379,0.309873682371932,0,0,0.233931608445408,0.214871054048298,0,0,0 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|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0.281577444303333,0.234064526321993,0,0,0.342401459862411,0.174840804837995,0,0,0,0,0,0,2.8064285749853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61853168687678,0.528990979272033,2.53532561402472,0.338844532069132,0,0,0,0,0.898800331555214,0.768436610643109,0.414758449233911,0.135005938331691,1.26194976810829,2.28520787523043,1.54607978666129,0.61245399607477,0.670918297127655,1.83843757322004,0,0.383062014255563,0.46081959976873,1.71452174049252,1.73826522844578,0,0,0,0.916789486660861,2.94628585473668,3.27454865837937,4.28718725398191,0.075726193333184,0.302286240427142,0,0,0,0,0,0,0.140444420131752,0,0,0,1.69012103732017,0,0,0,0,0,0,0.45673551887624,0,0,0.693941307064543,0,0.461230994512117,0.452167921657868,0,0,0,0,0,0.161766849947409,0,0,0,0.292780797011547,0.209446706813455,0,0,0,0,0,0,1.13088916901578,0.173824320192276,1.02286182932132,0,0.162241263067758,0.203678727700633,0.124406970610093,0.252722758433675,0,0,0.689706313300419,0.540186389416048,0.60281927134286,0.204109497453984,0.2562274405697,0.281105173679186,0.258703370739016,0.215567992932842,0.567318240503458,0.703804496655795,1.09597866213787,0.556094498451196,0.348252166522167,0.205782136407943,0.398068533636986,0,0,0,0,0.938104239924385,0,0,0,0,0,0,0.116765342367169,0.16455984991348,0,0,0,0,0,0.420579897128254,0.411618449517138,0,0,0.213288250535234,0.232236671860439,0.128867461322093,0,0,0.380451252225118,0,0.164698954724011,0,0.198956472041151,0,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0.0701358198903186,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.162964976442026,0,0,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0.631016438832513,0,0.861693590931196,0,1.33679204449436,0.566153061577665,0,0,0,0.642642632843614,0,0.35613120733451,0.162886959353576,0,0,0,0.302323556964751,0,0,0,0,0,0.356497378384721,0,0,0,0.340439605753788,0.36012218806262,0.646793418913773,0.214337035031592,0.709360934569094,1.78368817602071,1.64549020602121,0.913394847343798,0,0,0,0,0,0.120625849856312,0,0.164140899745061,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0.316335993581135,0,0.216010681643603,0.209088296014469,0.218362563746178,0.134864346384821,0,0,0,0,24.8024893021044,0.598066184175915,1.32366792365678,0.388902376688095,0.774958940866387,0.506868376472335,0.117357238645754,0.2604087696879,0.104859344425711,8.45544422891021,10.9451402377989,0,0.405450430580328,0.205421914329655,0.129920822977795,0.179026695667481,0.39736270956253,0.600977247599844,0.147689527174577,0,0,0.100826185136841,0.38983152295901,0.384847366561318,0.116876902181569,0,0,0,0,0.19318959403219,0,0,0,0,1.6942555278512,1.38097570952153,0,1.89038500578056,0.685082519770642,0.755393897389701,0,0.45032120322422,0.453142408984205,1.03552062350364,0.103787347584177,0.399024873401031,0.512200817262403,0.243106717068294,0.209613162627982,0.183843508450014,0,0,0.320919209591815,0.252697211763798,0.50695859978048,0.377252682772152,0.280924522409647,0.128050304809739,0.287177344778066,0,0.463537303779422,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0.238436189947321,0.436039249896986,0.282328141245992,0.0846146078916765,0.182927972872773,0,0.135804113845862,0,0.830445126869219,0.394017929502254,0.818462086339379,0.309873682371932,0,0,0.233931608445408,0.214871054048298,0,0,0 | ||
|short_description=p5@Kcnmb4 | |||
}} | }} |
Latest revision as of 15:15, 25 September 2015
Short description: | p5@Kcnmb4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Kcnmb4_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -22bp_to_NM_021452, uc007hbw.1, uc007hby.1_5end |
EntrezGene: | Kcnmb4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.54e-16 | 23 |
neuroblast (sensu Vertebrata) | 4.54e-16 | 23 |
neuron | 1.30e-12 | 33 |
neuronal stem cell | 1.30e-12 | 33 |
neuroblast | 1.30e-12 | 33 |
electrically signaling cell | 1.30e-12 | 33 |
neuron of the ventral spinal cord | 1.34e-11 | 3 |
ectodermal cell | 1.51e-10 | 44 |
neurectodermal cell | 1.51e-10 | 44 |
electrically responsive cell | 2.55e-10 | 39 |
electrically active cell | 2.55e-10 | 39 |
neural cell | 3.79e-09 | 43 |
neuron of the dorsal spinal cord | 1.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 1.29e-17 | 5 |
gray matter of spinal cord | 1.29e-17 | 5 |
gray matter | 1.29e-16 | 34 |
spinal cord | 1.23e-14 | 6 |
dorsal region element | 1.23e-14 | 6 |
dorsum | 1.23e-14 | 6 |
neural tube | 2.33e-13 | 52 |
neural rod | 2.33e-13 | 52 |
future spinal cord | 2.33e-13 | 52 |
neural keel | 2.33e-13 | 52 |
central nervous system | 7.26e-13 | 73 |
regional part of nervous system | 9.56e-13 | 54 |
nervous system | 2.01e-12 | 75 |
ventral horn of spinal cord | 1.34e-11 | 3 |
neurectoderm | 2.94e-10 | 64 |
neural plate | 2.94e-10 | 64 |
presumptive neural plate | 2.94e-10 | 64 |
ectoderm-derived structure | 3.11e-10 | 95 |
ectoderm | 3.11e-10 | 95 |
presumptive ectoderm | 3.11e-10 | 95 |
ecto-epithelium | 6.51e-10 | 73 |
regional part of forebrain | 3.54e-08 | 39 |
forebrain | 3.54e-08 | 39 |
future forebrain | 3.54e-08 | 39 |
anterior neural tube | 6.33e-08 | 40 |
brain grey matter | 1.13e-07 | 29 |
regional part of telencephalon | 1.13e-07 | 29 |
telencephalon | 1.13e-07 | 29 |
dorsal horn of spinal cord | 1.15e-07 | 2 |
structure with developmental contribution from neural crest | 3.58e-07 | 92 |
posterior neural tube | 3.63e-07 | 12 |
chordal neural plate | 3.63e-07 | 12 |