FFCP PHASE1:Mm9::chr3:129763768..129763783,-: Difference between revisions
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{{FFCP|EntrezGene=99683|HGNC=|MCL_coexpression_id=425|UniProt=Q80ZX0,Q3U882|association_with_transcript=41bp_to_ENSMUST00000001079,ENSMUST00000098616,NM_207209,uc008rit.1_5end|description=CAGE_peak_3_at_Sec24b_5end|id=chr3:129763768..129763783,-|ontology_enrichment_celltype=CL:0000540!8.20e-14!33;CL:0000047!8.20e-14!33;CL:0000031!8.20e-14!33;CL:0000404!8.20e-14!33;CL:0000221!2.39e-12!44;CL:0000133!2.39e-12!44;CL:0002319!5.54e-12!43;CL:0000393!1.62e-10!39;CL:0000211!1.62e-10!39;CL:0000117!6.52e-10!23;CL:0000337!6.52e-10!23;CL:0000055!8.10e-09!50|ontology_enrichment_celltype_v019_2=CL:0000540,1.53e-14,33;CL:0000047,1.53e-14,33;CL:0000031,1.53e-14,33;CL:0000404,1.53e-14,33;CL:0000221,9.86e-12,44;CL:0000133,9.86e-12,44;CL:0002319,2.47e-11,43;CL:0000393,1.41e-10,39;CL:0000211,1.41e-10,39;CL:0000117,2.23e-10,23;CL:0000337,2.23e-10,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.62e-18!73;UBERON:0005743!5.62e-18!73;UBERON:0000073!2.08e-17!75;UBERON:0001016!2.08e-17!75;UBERON:0004121!1.37e-16!102;UBERON:0000924!1.37e-16!102;UBERON:0006601!1.37e-16!102;UBERON:0002346!4.50e-13!71;UBERON:0003075!4.50e-13!71;UBERON:0007284!4.50e-13!71;UBERON:0000033!4.47e-11!63;UBERON:0003056!1.04e-10!49;UBERON:0001049!1.05e-10!52;UBERON:0005068!1.05e-10!52;UBERON:0006241!1.05e-10!52;UBERON:0007135!1.05e-10!52;UBERON:0002020!4.35e-10!34;UBERON:0000955!7.26e-10!50;UBERON:0006238!7.26e-10!50;UBERON:0002616!1.99e-09!49;UBERON:0003080!1.02e-08!40;UBERON:0002780!1.19e-08!39;UBERON:0001890!1.19e-08!39;UBERON:0006240!1.19e-08!39;UBERON:0000153!4.23e-08!94;UBERON:0002791!9.08e-08!29;UBERON:0003528!9.08e-08!29;UBERON:0001893!9.08e-08!29;UBERON:0000468!5.04e-07!333;UBERON:0007811!9.21e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.24e-18,73;UBERON:0001016,5.26e-17,75;UBERON:0004121,9.79e-16,95;UBERON:0000924,9.79e-16,95;UBERON:0006601,9.79e-16,95;UBERON:0002346,4.52e-14,64;UBERON:0003075,4.52e-14,64;UBERON:0007284,4.52e-14,64;UBERON:0000073,2.11e-12,54;UBERON:0010371,1.05e-11,73;UBERON:0010314,3.23e-11,92;UBERON:0001049,4.60e-11,52;UBERON:0005068,4.60e-11,52;UBERON:0006241,4.60e-11,52;UBERON:0007135,4.60e-11,52;UBERON:0003056,1.39e-10,49;UBERON:0002020,1.85e-10,34;UBERON:0000955,1.26e-09,47;UBERON:0006238,1.26e-09,47;UBERON:0002616,3.78e-09,46;UBERON:0003080,8.44e-09,40;UBERON:0002780,1.02e-08,39;UBERON:0001890,1.02e-08,39;UBERON:0006240,1.02e-08,39;UBERON:0003528,6.87e-08,29;UBERON:0002791,6.87e-08,29;UBERON:0001893,6.87e-08,29;UBERON:0000956,8.32e-07,21;UBERON:0001869,8.32e-07,21;UBERON:0000203,8.32e-07,21|phase1_expression=0.640595388419176,0,0.454999239389536,0,0,0.16787927191189,0,0.387369970324729,0,0.234064526321993,0.171217968225505,0.159544317990673,0.171200729931206,0.437102012094987,0,0,0,0.157731082679119,0.274228867211478,0,0.765389611359628,0.397163804803541,0.522399578277871,0.159992422793407,0.22940928106717,0,0,0.215471232685889,0,0,0,0.635030673459631,1.84519436275371,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.811015449756117,0.734187008646726,0,2.39827672018491,0.659058548203415,1.55543919259427,0.979904951377538,4.31257693094915,0.167782606057736,0,0.336093799142464,1.28629718017973,0.573066879877513,0,3.64169629547276,3.1739458756322,5.70448263155561,0.677689064138264,1.77858959222228,0,0,0,2.09720077362883,0.768436610643109,6.0139975138917,5.53524347159932,3.36519938162211,1.99955689082663,3.3130281142742,3.91970557487853,3.45043695665651,4.5960939330501,3.30347642998166,1.91531007127782,1.53606533256243,4.87979264601717,4.39140689291566,3.64639359389732,1.11673199600552,0.56276261003168,0.916789486660861,4.41942878210502,3.98640706237488,4.28718725398191,0.757261933331841,0.831287161174641,0.579728977403356,0,0.679971333707751,0,0,0.448026887097336,0.421333260395256,0.170430322578058,0,0,2.67602497575693,0,0,0,0.865964164044856,0.253359865475099,0.505524445014783,0.11418387971906,0.258937883647172,0.29688427812965,1.04091196059682,1.82679286987285,0.691846491768175,1.20578112442098,2.93971767839262,0.628332956648377,0.247194967734374,1.01219549843938,0,0.808834249737046,0,0.484875253135222,0,2.63502717310392,1.46612694769419,0,0.11981512450592,0.599902730993408,0.254140454146129,1.64769703345305,1.83000241127451,4.52355667606312,1.21677024134594,1.53429274398198,1.0389402227978,1.62241263067758,3.86989582631202,0.124406970610093,0,0.631325567659422,2.99277018814219,2.06911893990126,2.88099407688559,2.10986744970001,3.74200745332303,2.94661556655154,3.18585863503078,0.776110112217047,3.01795190105979,2.26927296201383,2.99116911078713,2.6303487891309,1.66828349535359,2.089512999133,1.85203922767149,3.18454826909589,0,0,0.284163499395593,3.52113813310353,2.57978665979206,1.98068267607116,3.07768156260773,2.36117078096885,0.925602677324269,1.16266972375204,1.87791380979733,1.86824547787471,0.658239399653922,1.31333971263276,0.810688095458557,0.730999937126662,0.878200461164203,0.536825675041487,1.05144974282064,4.21908910755066,0,0,2.77274725695804,3.71578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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=99683 | |||
|HGNC= | |||
|MCL_coexpression_id=425 | |||
|TSSclassifier=NA | |||
|UniProt=Q80ZX0,Q3U882 | |||
|association_with_transcript=41bp_to_ENSMUST00000001079,ENSMUST00000098616,NM_207209,uc008rit.1_5end | |||
|cluster_id=chr3:129763768..129763783,- | |||
|description=CAGE_peak_3_at_Sec24b_5end | |||
|id=chr3:129763768..129763783,- | |||
|ontology_enrichment_celltype=CL:0000540!8.20e-14!33;CL:0000047!8.20e-14!33;CL:0000031!8.20e-14!33;CL:0000404!8.20e-14!33;CL:0000221!2.39e-12!44;CL:0000133!2.39e-12!44;CL:0002319!5.54e-12!43;CL:0000393!1.62e-10!39;CL:0000211!1.62e-10!39;CL:0000117!6.52e-10!23;CL:0000337!6.52e-10!23;CL:0000055!8.10e-09!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.53e-14,33;CL:0000047,1.53e-14,33;CL:0000031,1.53e-14,33;CL:0000404,1.53e-14,33;CL:0000221,9.86e-12,44;CL:0000133,9.86e-12,44;CL:0002319,2.47e-11,43;CL:0000393,1.41e-10,39;CL:0000211,1.41e-10,39;CL:0000117,2.23e-10,23;CL:0000337,2.23e-10,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.62e-18!73;UBERON:0005743!5.62e-18!73;UBERON:0000073!2.08e-17!75;UBERON:0001016!2.08e-17!75;UBERON:0004121!1.37e-16!102;UBERON:0000924!1.37e-16!102;UBERON:0006601!1.37e-16!102;UBERON:0002346!4.50e-13!71;UBERON:0003075!4.50e-13!71;UBERON:0007284!4.50e-13!71;UBERON:0000033!4.47e-11!63;UBERON:0003056!1.04e-10!49;UBERON:0001049!1.05e-10!52;UBERON:0005068!1.05e-10!52;UBERON:0006241!1.05e-10!52;UBERON:0007135!1.05e-10!52;UBERON:0002020!4.35e-10!34;UBERON:0000955!7.26e-10!50;UBERON:0006238!7.26e-10!50;UBERON:0002616!1.99e-09!49;UBERON:0003080!1.02e-08!40;UBERON:0002780!1.19e-08!39;UBERON:0001890!1.19e-08!39;UBERON:0006240!1.19e-08!39;UBERON:0000153!4.23e-08!94;UBERON:0002791!9.08e-08!29;UBERON:0003528!9.08e-08!29;UBERON:0001893!9.08e-08!29;UBERON:0000468!5.04e-07!333;UBERON:0007811!9.21e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.24e-18,73;UBERON:0001016,5.26e-17,75;UBERON:0004121,9.79e-16,95;UBERON:0000924,9.79e-16,95;UBERON:0006601,9.79e-16,95;UBERON:0002346,4.52e-14,64;UBERON:0003075,4.52e-14,64;UBERON:0007284,4.52e-14,64;UBERON:0000073,2.11e-12,54;UBERON:0010371,1.05e-11,73;UBERON:0010314,3.23e-11,92;UBERON:0001049,4.60e-11,52;UBERON:0005068,4.60e-11,52;UBERON:0006241,4.60e-11,52;UBERON:0007135,4.60e-11,52;UBERON:0003056,1.39e-10,49;UBERON:0002020,1.85e-10,34;UBERON:0000955,1.26e-09,47;UBERON:0006238,1.26e-09,47;UBERON:0002616,3.78e-09,46;UBERON:0003080,8.44e-09,40;UBERON:0002780,1.02e-08,39;UBERON:0001890,1.02e-08,39;UBERON:0006240,1.02e-08,39;UBERON:0003528,6.87e-08,29;UBERON:0002791,6.87e-08,29;UBERON:0001893,6.87e-08,29;UBERON:0000956,8.32e-07,21;UBERON:0001869,8.32e-07,21;UBERON:0000203,8.32e-07,21 | |||
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| |||
|short_description=p3@Sec24b | |||
}} |
Latest revision as of 14:41, 1 October 2015
Short description: | p3@Sec24b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sec24b_5end |
Coexpression cluster: | MCL_coexpression_mm9:425 |
Association with transcript: | 41bp_to_ENSMUST00000001079, ENSMUST00000098616, NM_207209, uc008rit.1_5end |
EntrezGene: | Sec24b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.53e-14 | 33 |
neuronal stem cell | 1.53e-14 | 33 |
neuroblast | 1.53e-14 | 33 |
electrically signaling cell | 1.53e-14 | 33 |
ectodermal cell | 9.86e-12 | 44 |
neurectodermal cell | 9.86e-12 | 44 |
neural cell | 2.47e-11 | 43 |
electrically responsive cell | 1.41e-10 | 39 |
electrically active cell | 1.41e-10 | 39 |
CNS neuron (sensu Vertebrata) | 2.23e-10 | 23 |
neuroblast (sensu Vertebrata) | 2.23e-10 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.24e-18 | 73 |
nervous system | 5.26e-17 | 75 |
ectoderm-derived structure | 9.79e-16 | 95 |
ectoderm | 9.79e-16 | 95 |
presumptive ectoderm | 9.79e-16 | 95 |
neurectoderm | 4.52e-14 | 64 |
neural plate | 4.52e-14 | 64 |
presumptive neural plate | 4.52e-14 | 64 |
regional part of nervous system | 2.11e-12 | 54 |
ecto-epithelium | 1.05e-11 | 73 |
structure with developmental contribution from neural crest | 3.23e-11 | 92 |
neural tube | 4.60e-11 | 52 |
neural rod | 4.60e-11 | 52 |
future spinal cord | 4.60e-11 | 52 |
neural keel | 4.60e-11 | 52 |
pre-chordal neural plate | 1.39e-10 | 49 |
gray matter | 1.85e-10 | 34 |
brain | 1.26e-09 | 47 |
future brain | 1.26e-09 | 47 |
regional part of brain | 3.78e-09 | 46 |
anterior neural tube | 8.44e-09 | 40 |
regional part of forebrain | 1.02e-08 | 39 |
forebrain | 1.02e-08 | 39 |
future forebrain | 1.02e-08 | 39 |
brain grey matter | 6.87e-08 | 29 |
regional part of telencephalon | 6.87e-08 | 29 |
telencephalon | 6.87e-08 | 29 |
cerebral cortex | 8.32e-07 | 21 |
cerebral hemisphere | 8.32e-07 | 21 |
pallium | 8.32e-07 | 21 |