FFCP PHASE1:Mm9::chr3:94386470..94386495,-: Difference between revisions
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{{FFCP|EntrezGene=76742|HGNC=|MCL_coexpression_id=797|UniProt=Q3UHD6|association_with_transcript=0bp_to_ENSMUST00000107283_5end|description=CAGE_peak_1_at_Snx27_5end|id=chr3:94386470..94386495,-|ontology_enrichment_celltype=CL:0000540!3.54e-18!33;CL:0000047!3.54e-18!33;CL:0000031!3.54e-18!33;CL:0000404!3.54e-18!33;CL:0000117!4.67e-13!23;CL:0000337!4.67e-13!23;CL:0000393!5.04e-13!39;CL:0000211!5.04e-13!39;CL:0002319!2.83e-11!43;CL:0000221!5.91e-11!44;CL:0000133!5.91e-11!44;CL:0000055!1.31e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,3.54e-18,33;CL:0000047,3.54e-18,33;CL:0000031,3.54e-18,33;CL:0000404,3.54e-18,33;CL:0000117,4.67e-13,23;CL:0000337,4.67e-13,23;CL:0000393,5.04e-13,39;CL:0000211,5.04e-13,39;CL:0002319,2.83e-11,43;CL:0000221,5.91e-11,44;CL:0000133,5.91e-11,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.56e-22!73;UBERON:0005743!3.56e-22!73;UBERON:0000073!9.55e-21!75;UBERON:0001016!9.55e-21!75;UBERON:0004121!4.32e-17!102;UBERON:0000924!4.32e-17!102;UBERON:0006601!4.32e-17!102;UBERON:0002346!5.96e-16!71;UBERON:0003075!5.96e-16!71;UBERON:0007284!5.96e-16!71;UBERON:0000153!2.26e-15!94;UBERON:0001049!8.50e-15!52;UBERON:0005068!8.50e-15!52;UBERON:0006241!8.50e-15!52;UBERON:0007135!8.50e-15!52;UBERON:0000033!2.26e-14!63;UBERON:0000955!1.04e-13!50;UBERON:0006238!1.04e-13!50;UBERON:0002616!3.96e-13!49;UBERON:0002020!4.13e-13!34;UBERON:0007811!4.35e-13!86;UBERON:0003056!1.50e-12!49;UBERON:0003080!7.50e-11!40;UBERON:0002791!2.32e-10!29;UBERON:0003528!2.32e-10!29;UBERON:0001893!2.32e-10!29;UBERON:0002780!2.42e-10!39;UBERON:0001890!2.42e-10!39;UBERON:0006240!2.42e-10!39;UBERON:0000468!1.51e-09!333;UBERON:0000922!1.03e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.56e-22,73;UBERON:0001016,9.55e-21,75;UBERON:0004121,8.38e-19,95;UBERON:0000924,8.38e-19,95;UBERON:0006601,8.38e-19,95;UBERON:0002346,2.85e-18,64;UBERON:0003075,2.85e-18,64;UBERON:0007284,2.85e-18,64;UBERON:0000073,6.96e-16,54;UBERON:0010371,2.42e-15,73;UBERON:0001049,8.50e-15,52;UBERON:0005068,8.50e-15,52;UBERON:0006241,8.50e-15,52;UBERON:0007135,8.50e-15,52;UBERON:0010314,3.33e-14,92;UBERON:0002020,4.13e-13,34;UBERON:0003056,1.50e-12,49;UBERON:0000955,3.09e-12,47;UBERON:0006238,3.09e-12,47;UBERON:0002616,1.13e-11,46;UBERON:0003080,7.50e-11,40;UBERON:0003528,2.32e-10,29;UBERON:0002791,2.32e-10,29;UBERON:0001893,2.32e-10,29;UBERON:0002780,2.42e-10,39;UBERON:0001890,2.42e-10,39;UBERON:0006240,2.42e-10,39;UBERON:0000922,1.44e-09,320|phase1_expression=26.2644109251862,4.53668029931169,5.0049916332849,10.2837831844322,12.5223932486587,4.70061961353291,3.97141489012394,7.36002943616985,13.51571732656,14.0438715793196,11.6428218393343,12.0455960082958,5.64962408772979,7.34331380319578,6.32908547449759,5.66930748691513,2.09868563438444,6.62470547252299,8.77532375076728,10.1853516431527,28.8296753612127,9.53193131528499,6.00759515019551,5.59973479776923,4.35877634027623,6.31655160526522,3.87685796543167,4.74036711908956,3.99049180858385,5.54466285471848,1.99557459589774,3.81018404075779,6.76571266343027,15.8481681015439,4.33277429626912,4.98703936075477,3.67504841272264,20.9265815368454,10.1573594788094,16.7527598071615,19.9998705930545,18.442228093878,17.9638830621527,8.81277725829041,9.22530074097583,14.8672869250962,5.47673941043627,21.8025156380447,13.8402295122717,13.2212331370513,13.0187372111587,14.3752564364972,9.06026072711776,8.70434570413613,12.7715643674136,13.3774906738692,13.4670716771216,8.25075347643908,51.9953304409166,48.667170093027,49.438849473482,7.79342423759004,7.11435836888911,13.0485459005803,7.9109309005358,6.3943210345149,11.3848041996994,17.28982373947,35.2544681848824,32.4014251996058,34.703618622978,37.7059299413021,34.0137553065485,40.7894361385797,37.8589610522034,43.203282970671,41.8440347797677,41.8814468919416,41.627370512442,49.9849030497435,41.992828413506,36.98484930953,36.0146068711781,33.2029939918691,41.1027286519619,51.5600024578918,51.2538050876771,51.2598476019577,11.8132861599767,9.52201657345497,8.69593466105033,6.0229671388697,1.3599426674155,12.4131734076698,12.9955283489534,8.96053774194671,13.4826643326482,6.47635225796619,6.49465011507172,8.83348936275851,16.760366953425,16.6824420638613,61.153257529595,28.4426681261332,4.32982082022428,3.04031838570118,3.53867111510348,10.5049169341535,15.2773351351831,18.5552673831031,20.9917245387024,12.4830846107978,14.9900073216438,17.9359942257621,17.8734834846271,13.0693254982862,18.539622580078,12.0017466243527,16.8076004870476,20.0590893934787,13.471332626084,13.091631834651,5.59175283654366,41.8676539726512,41.889341362691,6.89734049063197,4.19352935770721,3.59941638596045,4.95573885584952,42.3907509515648,42.5475560621323,65.5915718029152,42.0654854865309,45.7730668621292,42.3887610901503,42.9939347129558,23.5248930494231,12.1918831197891,7.58168275301024,20.6233018768745,27.7156543510559,28.9676651586176,26.4691330813863,31.3466021098287,33.405921083302,31.515975190073,30.453060481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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76742 | |||
|HGNC= | |||
|MCL_coexpression_id=797 | |||
|TSSclassifier=NA | |||
|UniProt=Q3UHD6 | |||
|association_with_transcript=0bp_to_ENSMUST00000107283_5end | |||
|cluster_id=chr3:94386470..94386495,- | |||
|description=CAGE_peak_1_at_Snx27_5end | |||
|id=chr3:94386470..94386495,- | |||
|ontology_enrichment_celltype=CL:0000540!3.54e-18!33;CL:0000047!3.54e-18!33;CL:0000031!3.54e-18!33;CL:0000404!3.54e-18!33;CL:0000117!4.67e-13!23;CL:0000337!4.67e-13!23;CL:0000393!5.04e-13!39;CL:0000211!5.04e-13!39;CL:0002319!2.83e-11!43;CL:0000221!5.91e-11!44;CL:0000133!5.91e-11!44;CL:0000055!1.31e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.54e-18,33;CL:0000047,3.54e-18,33;CL:0000031,3.54e-18,33;CL:0000404,3.54e-18,33;CL:0000117,4.67e-13,23;CL:0000337,4.67e-13,23;CL:0000393,5.04e-13,39;CL:0000211,5.04e-13,39;CL:0002319,2.83e-11,43;CL:0000221,5.91e-11,44;CL:0000133,5.91e-11,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.56e-22!73;UBERON:0005743!3.56e-22!73;UBERON:0000073!9.55e-21!75;UBERON:0001016!9.55e-21!75;UBERON:0004121!4.32e-17!102;UBERON:0000924!4.32e-17!102;UBERON:0006601!4.32e-17!102;UBERON:0002346!5.96e-16!71;UBERON:0003075!5.96e-16!71;UBERON:0007284!5.96e-16!71;UBERON:0000153!2.26e-15!94;UBERON:0001049!8.50e-15!52;UBERON:0005068!8.50e-15!52;UBERON:0006241!8.50e-15!52;UBERON:0007135!8.50e-15!52;UBERON:0000033!2.26e-14!63;UBERON:0000955!1.04e-13!50;UBERON:0006238!1.04e-13!50;UBERON:0002616!3.96e-13!49;UBERON:0002020!4.13e-13!34;UBERON:0007811!4.35e-13!86;UBERON:0003056!1.50e-12!49;UBERON:0003080!7.50e-11!40;UBERON:0002791!2.32e-10!29;UBERON:0003528!2.32e-10!29;UBERON:0001893!2.32e-10!29;UBERON:0002780!2.42e-10!39;UBERON:0001890!2.42e-10!39;UBERON:0006240!2.42e-10!39;UBERON:0000468!1.51e-09!333;UBERON:0000922!1.03e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.56e-22,73;UBERON:0001016,9.55e-21,75;UBERON:0004121,8.38e-19,95;UBERON:0000924,8.38e-19,95;UBERON:0006601,8.38e-19,95;UBERON:0002346,2.85e-18,64;UBERON:0003075,2.85e-18,64;UBERON:0007284,2.85e-18,64;UBERON:0000073,6.96e-16,54;UBERON:0010371,2.42e-15,73;UBERON:0001049,8.50e-15,52;UBERON:0005068,8.50e-15,52;UBERON:0006241,8.50e-15,52;UBERON:0007135,8.50e-15,52;UBERON:0010314,3.33e-14,92;UBERON:0002020,4.13e-13,34;UBERON:0003056,1.50e-12,49;UBERON:0000955,3.09e-12,47;UBERON:0006238,3.09e-12,47;UBERON:0002616,1.13e-11,46;UBERON:0003080,7.50e-11,40;UBERON:0003528,2.32e-10,29;UBERON:0002791,2.32e-10,29;UBERON:0001893,2.32e-10,29;UBERON:0002780,2.42e-10,39;UBERON:0001890,2.42e-10,39;UBERON:0006240,2.42e-10,39;UBERON:0000922,1.44e-09,320 | |||
|phase1_expression=26.2644109251862,4.53668029931169,5.0049916332849,10.2837831844322,12.5223932486587,4.70061961353291,3.97141489012394,7.36002943616985,13.51571732656,14.0438715793196,11.6428218393343,12.0455960082958,5.64962408772979,7.34331380319578,6.32908547449759,5.66930748691513,2.09868563438444,6.62470547252299,8.77532375076728,10.1853516431527,28.8296753612127,9.53193131528499,6.00759515019551,5.59973479776923,4.35877634027623,6.31655160526522,3.87685796543167,4.74036711908956,3.99049180858385,5.54466285471848,1.99557459589774,3.81018404075779,6.76571266343027,15.8481681015439,4.33277429626912,4.98703936075477,3.67504841272264,20.9265815368454,10.1573594788094,16.7527598071615,19.9998705930545,18.442228093878,17.9638830621527,8.81277725829041,9.22530074097583,14.8672869250962,5.47673941043627,21.8025156380447,13.8402295122717,13.2212331370513,13.0187372111587,14.3752564364972,9.06026072711776,8.70434570413613,12.7715643674136,13.3774906738692,13.4670716771216,8.25075347643908,51.9953304409166,48.667170093027,49.438849473482,7.79342423759004,7.11435836888911,13.0485459005803,7.9109309005358,6.3943210345149,11.3848041996994,17.28982373947,35.2544681848824,32.4014251996058,34.703618622978,37.7059299413021,34.0137553065485,40.7894361385797,37.8589610522034,43.203282970671,41.8440347797677,41.8814468919416,41.627370512442,49.9849030497435,41.992828413506,36.98484930953,36.0146068711781,33.2029939918691,41.1027286519619,51.5600024578918,51.2538050876771,51.2598476019577,11.8132861599767,9.52201657345497,8.69593466105033,6.0229671388697,1.3599426674155,12.4131734076698,12.9955283489534,8.96053774194671,13.4826643326482,6.47635225796619,6.49465011507172,8.83348936275851,16.760366953425,16.6824420638613,61.153257529595,28.4426681261332,4.32982082022428,3.04031838570118,3.53867111510348,10.5049169341535,15.2773351351831,18.5552673831031,20.9917245387024,12.4830846107978,14.9900073216438,17.9359942257621,17.8734834846271,13.0693254982862,18.539622580078,12.0017466243527,16.8076004870476,20.0590893934787,13.471332626084,13.091631834651,5.59175283654366,41.8676539726512,41.889341362691,6.89734049063197,4.19352935770721,3.59941638596045,4.95573885584952,42.3907509515648,42.5475560621323,65.5915718029152,42.0654854865309,45.7730668621292,42.3887610901503,42.9939347129558,23.5248930494231,12.1918831197891,7.58168275301024,20.6233018768745,27.7156543510559,28.9676651586176,26.4691330813863,31.3466021098287,33.405921083302,31.515975190073,30.4530604819119,20.6962696591213,32.9819029187249,42.1706558774237,44.867536661807,28.4954452155847,30.3071501655902,32.0391993200393,25.9285491874009,32.0445169577774,2.80885274925294,6.17634977075316,5.96743348730745,26.3049731120087,20.1692411583743,24.488440358698,30.5400708904921,26.1696428224047,24.065669610431,26.7414036462969,19.3156849007726,23.9368951852697,26.1650161362434,18.5509234409378,17.5919316714507,20.7603982143972,16.0271584162467,17.4468344388483,42.4785696099537,54.4365399486415,7.93005079161115,7.66906643324278,26.8743195674395,31.8164240448801,22.036335886078,20.9750865608276,16.4559752445204,13.8864707062168,7.11793592316767,12.1877226495768,17.5934646160189,14.9217354030863,16.7669114922443,10.7858329038507,8.42938394511308,7.16908583715722,22.3808123124636,25.3631697993598,25.9227792048085,24.641810669283,22.4984885114446,23.9864504024889,24.7254860155846,19.3369293853279,16.1708689676616,17.7691916047393,9.48648406678877,16.5176654658933,14.7419246334902,16.1900720917095,11.7658870405332,13.0235666266305,10.1850340712568,9.20627639842594,9.40384315295205,10.7078951143352,11.5014565221884,14.5134969590716,14.0416952901552,10.1031551178845,11.6608318789243,13.0259750768109,13.1174765018289,34.2979455304577,32.1041003590791,23.2550767512008,24.6424760702927,24.1209010716215,23.0902331659433,19.9036320814955,23.4876364718225,19.9318220683897,25.8316725225129,16.0586048421423,14.850908440467,17.6471851469444,24.1266054302836,12.5098307278303,8.35999264132362,12.6930903300177,35.1605792073264,39.2659150083881,15.0820149746541,14.1383719234449,41.9625931823621,37.4821194524773,48.4702644898798,43.731290025317,37.6529759199246,50.3876224804122,38.8618273607899,46.7609372658099,43.4816555741176,48.5195187796929,23.9878744001974,24.5730533060812,26.3876874152793,20.7862354945395,1.32745138339963,18.4513283477786,18.7440605318146,10.3732793865744,11.8120757152309,13.5271465095328,13.1798429515793,16.7225515559653,11.4079161083111,12.9575070753685,4.21674434299995,9.28219889233682,13.2771446243977,28.0895306688844,18.2395744133684,26.792129378949,26.4236948126988,21.4042581122485,20.7331765958672,16.1366423030738,15.9576761483323,23.0896957241564,15.2164594657924,22.2596441470998,19.8601244835964,17.9732516285904,13.966564248367,11.9822856813895,10.4933101186746,35.7870832880284,9.91051108627546,19.8131393244694,17.5934801001226,8.66494902221579,7.92826520781946,7.0921233694022,7.47905091972963,7.97723278244851,6.90999869022119,4.77335309007557,26.8885594543965,27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| |||
|short_description=p1@Snx27 | |||
}} |
Latest revision as of 22:47, 25 September 2015
Short description: | p1@Snx27 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Snx27_5end |
Coexpression cluster: | MCL_coexpression_mm9:797 |
Association with transcript: | 0bp_to_ENSMUST00000107283_5end |
EntrezGene: | Snx27 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.54e-18 | 33 |
neuronal stem cell | 3.54e-18 | 33 |
neuroblast | 3.54e-18 | 33 |
electrically signaling cell | 3.54e-18 | 33 |
CNS neuron (sensu Vertebrata) | 4.67e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.67e-13 | 23 |
electrically responsive cell | 5.04e-13 | 39 |
electrically active cell | 5.04e-13 | 39 |
neural cell | 2.83e-11 | 43 |
ectodermal cell | 5.91e-11 | 44 |
neurectodermal cell | 5.91e-11 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.56e-22 | 73 |
nervous system | 9.55e-21 | 75 |
ectoderm-derived structure | 8.38e-19 | 95 |
ectoderm | 8.38e-19 | 95 |
presumptive ectoderm | 8.38e-19 | 95 |
neurectoderm | 2.85e-18 | 64 |
neural plate | 2.85e-18 | 64 |
presumptive neural plate | 2.85e-18 | 64 |
regional part of nervous system | 6.96e-16 | 54 |
ecto-epithelium | 2.42e-15 | 73 |
neural tube | 8.50e-15 | 52 |
neural rod | 8.50e-15 | 52 |
future spinal cord | 8.50e-15 | 52 |
neural keel | 8.50e-15 | 52 |
structure with developmental contribution from neural crest | 3.33e-14 | 92 |
gray matter | 4.13e-13 | 34 |
pre-chordal neural plate | 1.50e-12 | 49 |
brain | 3.09e-12 | 47 |
future brain | 3.09e-12 | 47 |
regional part of brain | 1.13e-11 | 46 |
anterior neural tube | 7.50e-11 | 40 |
brain grey matter | 2.32e-10 | 29 |
regional part of telencephalon | 2.32e-10 | 29 |
telencephalon | 2.32e-10 | 29 |
regional part of forebrain | 2.42e-10 | 39 |
forebrain | 2.42e-10 | 39 |
future forebrain | 2.42e-10 | 39 |
embryo | 1.44e-09 | 320 |