FFCP PHASE1:Mm9::chr4:137773035..137773118,+: Difference between revisions
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{{FFCP|EntrezGene=15441|HGNC=|UniProt=A2AM63,Q3TEA8|association_with_transcript=0bp_to_ENSMUST00000137851,ENSMUST00000165861,NM_001122897,uc008vkl.2_5end|description=CAGE_peak_3_at_Hp1bp3_5end|id=chr4:137773035..137773118,+|ontology_enrichment_celltype=CL:0000540!4.93e-10!33;CL:0000047!4.93e-10!33;CL:0000031!4.93e-10!33;CL:0000404!4.93e-10!33;CL:0000117!5.99e-10!23;CL:0000337!5.99e-10!23;CL:0000393!1.92e-07!39;CL:0000211!1.92e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,4.93e-10,33;CL:0000047,4.93e-10,33;CL:0000031,4.93e-10,33;CL:0000404,4.93e-10,33;CL:0000117,5.98e-10,23;CL:0000337,5.98e-10,23;CL:0000393,1.93e-07,39;CL:0000211,1.93e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!3.01e-16!86;UBERON:0000153!7.32e-15!94;UBERON:0000073!2.02e-14!75;UBERON:0001016!2.02e-14!75;UBERON:0001017!3.35e-14!73;UBERON:0005743!3.35e-14!73;UBERON:0004121!6.57e-14!102;UBERON:0000924!6.57e-14!102;UBERON:0006601!6.57e-14!102;UBERON:0002346!4.58e-13!71;UBERON:0003075!4.58e-13!71;UBERON:0007284!4.58e-13!71;UBERON:0002020!1.81e-12!34;UBERON:0001049!2.34e-12!52;UBERON:0005068!2.34e-12!52;UBERON:0006241!2.34e-12!52;UBERON:0007135!2.34e-12!52;UBERON:0000955!1.23e-11!50;UBERON:0006238!1.23e-11!50;UBERON:0002616!3.92e-11!49;UBERON:0003056!8.71e-11!49;UBERON:0000033!1.10e-10!63;UBERON:0002791!2.76e-10!29;UBERON:0003528!2.76e-10!29;UBERON:0001893!2.76e-10!29;UBERON:0003080!2.76e-10!40;UBERON:0002780!6.79e-10!39;UBERON:0001890!6.79e-10!39;UBERON:0006240!6.79e-10!39;UBERON:0000475!3.12e-07!200;UBERON:0004177!7.22e-07!29;UBERON:0000956!8.02e-07!21;UBERON:0001869!8.02e-07!21;UBERON:0000203!8.02e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.02e-14,75;UBERON:0001017,3.35e-14,73;UBERON:0004121,1.02e-13,95;UBERON:0000924,1.02e-13,95;UBERON:0006601,1.02e-13,95;UBERON:0000073,2.87e-13,54;UBERON:0002346,3.74e-13,64;UBERON:0003075,3.74e-13,64;UBERON:0007284,3.74e-13,64;UBERON:0002020,1.81e-12,34;UBERON:0001049,2.34e-12,52;UBERON:0005068,2.34e-12,52;UBERON:0006241,2.34e-12,52;UBERON:0007135,2.34e-12,52;UBERON:0010371,3.11e-12,73;UBERON:0003056,8.71e-11,49;UBERON:0000955,1.61e-10,47;UBERON:0006238,1.61e-10,47;UBERON:0003528,2.76e-10,29;UBERON:0002791,2.76e-10,29;UBERON:0001893,2.76e-10,29;UBERON:0003080,2.76e-10,40;UBERON:0002616,4.97e-10,46;UBERON:0002780,6.79e-10,39;UBERON:0001890,6.79e-10,39;UBERON:0006240,6.79e-10,39;UBERON:0010314,8.14e-08,92;UBERON:0004177,7.03e-07,29;UBERON:0005057,7.03e-07,29;UBERON:0000956,8.02e-07,21;UBERON:0001869,8.02e-07,21;UBERON:0000203,8.02e-07,21|phase1_expression=5.60520964866779,1.74487703819681,1.81999695755814,1.81478526784098,1.00179145989269,1.51091344720701,2.56973904655078,15.236552166106,8.869689495555,8.66038747391376,7.70480857014772,4.70655738072485,38.8625656943837,20.1066925563694,10.6595123781012,14.9831697868471,27.9824751251259,18.7699988388151,16.5908464662944,13.1560792057389,7.99406927420056,9.23405846168233,7.57479388502913,0.47997726838022,1.14704640533585,1.72269589234506,0.86152399231815,1.07735616342945,1.14014051673824,1.51218077855958,0.886922042621219,5.08024538767705,7.38077745101484,0,2.59966457776147,2.99222361645286,1.63335485009895,6.27797446105362,2.3440060335714,7.85285615960697,7.05877785637217,8.19654581950135,6.79714494243615,2.64383317748712,2.23029248682932,0.550640256485045,3.9119567217402,1.74420125104357,2.63623419281366,2.3331587888914,3.07970127575798,5.75010257459886,6.37573903019398,24.6623128283857,25.2070349356848,6.17422646486273,6.87680255853016,9.7977697532714,13.5552028775931,23.8045940672415,14.5781222806421,1.69422266034566,2.66788438833342,1.3498495759221,6.92206453796882,2.8419204597844,4.19440154725767,2.68952813725088,9.33206510776299,12.9605700798423,9.04397333810943,10.8547374073445,15.6816664075646,10.1667363348412,13.0349840584801,11.0306254393203,11.0115880999389,12.5133591323484,17.9719643909805,20.3104883104499,20.1272815925301,17.7110545989298,9.77140496504833,11.2552522006336,15.279824777681,17.0884579574727,14.9490264839058,15.2847545576746,8.93569081331572,7.70829913089212,7.24661221754194,4.30211938490693,8.15965600449301,2.69851595818909,3.24888208723835,2.24013443548668,2.80888840263504,1.70430322578058,2.33807404142582,2.47337702157238,7.18301440861071,3.84979432242953,7.64415719119937,0,1.29894624606728,1.26679932737549,0.505524445014783,2.8545969929765,25.1169747137757,8.60964406575984,6.07198643681475,9.13396434936424,7.37969591219387,7.38540938707851,11.170927177892,4.14699751387929,7.91023896749996,3.90418263683761,8.84610551949874,5.01477234836968,7.72945314611377,9.21262980956922,5.59175283654366,9.07620470735796,10.0534419270458,4.59822699375465,9.82484020948546,10.1983464268879,9.27612657633372,13.481157546434,14.640019290196,17.3403005915753,16.1656617778817,21.2243829584174,15.3763152974074,18.8199865158599,5.09196819251581,7.2156042953854,5.05445516867349,6.10281382070775,4.94457683258274,8.04657365517155,7.74267158163002,7.9873553452929,12.04246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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=15441 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=A2AM63,Q3TEA8 | |||
|association_with_transcript=0bp_to_ENSMUST00000137851,ENSMUST00000165861,NM_001122897,uc008vkl.2_5end | |||
|cluster_id=chr4:137773035..137773118,+ | |||
|description=CAGE_peak_3_at_Hp1bp3_5end | |||
|id=chr4:137773035..137773118,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.93e-10!33;CL:0000047!4.93e-10!33;CL:0000031!4.93e-10!33;CL:0000404!4.93e-10!33;CL:0000117!5.99e-10!23;CL:0000337!5.99e-10!23;CL:0000393!1.92e-07!39;CL:0000211!1.92e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,4.93e-10,33;CL:0000047,4.93e-10,33;CL:0000031,4.93e-10,33;CL:0000404,4.93e-10,33;CL:0000117,5.98e-10,23;CL:0000337,5.98e-10,23;CL:0000393,1.93e-07,39;CL:0000211,1.93e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!3.01e-16!86;UBERON:0000153!7.32e-15!94;UBERON:0000073!2.02e-14!75;UBERON:0001016!2.02e-14!75;UBERON:0001017!3.35e-14!73;UBERON:0005743!3.35e-14!73;UBERON:0004121!6.57e-14!102;UBERON:0000924!6.57e-14!102;UBERON:0006601!6.57e-14!102;UBERON:0002346!4.58e-13!71;UBERON:0003075!4.58e-13!71;UBERON:0007284!4.58e-13!71;UBERON:0002020!1.81e-12!34;UBERON:0001049!2.34e-12!52;UBERON:0005068!2.34e-12!52;UBERON:0006241!2.34e-12!52;UBERON:0007135!2.34e-12!52;UBERON:0000955!1.23e-11!50;UBERON:0006238!1.23e-11!50;UBERON:0002616!3.92e-11!49;UBERON:0003056!8.71e-11!49;UBERON:0000033!1.10e-10!63;UBERON:0002791!2.76e-10!29;UBERON:0003528!2.76e-10!29;UBERON:0001893!2.76e-10!29;UBERON:0003080!2.76e-10!40;UBERON:0002780!6.79e-10!39;UBERON:0001890!6.79e-10!39;UBERON:0006240!6.79e-10!39;UBERON:0000475!3.12e-07!200;UBERON:0004177!7.22e-07!29;UBERON:0000956!8.02e-07!21;UBERON:0001869!8.02e-07!21;UBERON:0000203!8.02e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.02e-14,75;UBERON:0001017,3.35e-14,73;UBERON:0004121,1.02e-13,95;UBERON:0000924,1.02e-13,95;UBERON:0006601,1.02e-13,95;UBERON:0000073,2.87e-13,54;UBERON:0002346,3.74e-13,64;UBERON:0003075,3.74e-13,64;UBERON:0007284,3.74e-13,64;UBERON:0002020,1.81e-12,34;UBERON:0001049,2.34e-12,52;UBERON:0005068,2.34e-12,52;UBERON:0006241,2.34e-12,52;UBERON:0007135,2.34e-12,52;UBERON:0010371,3.11e-12,73;UBERON:0003056,8.71e-11,49;UBERON:0000955,1.61e-10,47;UBERON:0006238,1.61e-10,47;UBERON:0003528,2.76e-10,29;UBERON:0002791,2.76e-10,29;UBERON:0001893,2.76e-10,29;UBERON:0003080,2.76e-10,40;UBERON:0002616,4.97e-10,46;UBERON:0002780,6.79e-10,39;UBERON:0001890,6.79e-10,39;UBERON:0006240,6.79e-10,39;UBERON:0010314,8.14e-08,92;UBERON:0004177,7.03e-07,29;UBERON:0005057,7.03e-07,29;UBERON:0000956,8.02e-07,21;UBERON:0001869,8.02e-07,21;UBERON:0000203,8.02e-07,21 | |||
|phase1_expression=5.60520964866779,1.74487703819681,1.81999695755814,1.81478526784098,1.00179145989269,1.51091344720701,2.56973904655078,15.236552166106,8.869689495555,8.66038747391376,7.70480857014772,4.70655738072485,38.8625656943837,20.1066925563694,10.6595123781012,14.9831697868471,27.9824751251259,18.7699988388151,16.5908464662944,13.1560792057389,7.99406927420056,9.23405846168233,7.57479388502913,0.47997726838022,1.14704640533585,1.72269589234506,0.86152399231815,1.07735616342945,1.14014051673824,1.51218077855958,0.886922042621219,5.08024538767705,7.38077745101484,0,2.59966457776147,2.99222361645286,1.63335485009895,6.27797446105362,2.3440060335714,7.85285615960697,7.05877785637217,8.19654581950135,6.79714494243615,2.64383317748712,2.23029248682932,0.550640256485045,3.9119567217402,1.74420125104357,2.63623419281366,2.3331587888914,3.07970127575798,5.75010257459886,6.37573903019398,24.6623128283857,25.2070349356848,6.17422646486273,6.87680255853016,9.7977697532714,13.5552028775931,23.8045940672415,14.5781222806421,1.69422266034566,2.66788438833342,1.3498495759221,6.92206453796882,2.8419204597844,4.19440154725767,2.68952813725088,9.33206510776299,12.9605700798423,9.04397333810943,10.8547374073445,15.6816664075646,10.1667363348412,13.0349840584801,11.0306254393203,11.0115880999389,12.5133591323484,17.9719643909805,20.3104883104499,20.1272815925301,17.7110545989298,9.77140496504833,11.2552522006336,15.279824777681,17.0884579574727,14.9490264839058,15.2847545576746,8.93569081331572,7.70829913089212,7.24661221754194,4.30211938490693,8.15965600449301,2.69851595818909,3.24888208723835,2.24013443548668,2.80888840263504,1.70430322578058,2.33807404142582,2.47337702157238,7.18301440861071,3.84979432242953,7.64415719119937,0,1.29894624606728,1.26679932737549,0.505524445014783,2.8545969929765,25.1169747137757,8.60964406575984,6.07198643681475,9.13396434936424,7.37969591219387,7.38540938707851,11.170927177892,4.14699751387929,7.91023896749996,3.90418263683761,8.84610551949874,5.01477234836968,7.72945314611377,9.21262980956922,5.59175283654366,9.07620470735796,10.0534419270458,4.59822699375465,9.82484020948546,10.1983464268879,9.27612657633372,13.481157546434,14.640019290196,17.3403005915753,16.1656617778817,21.2243829584174,15.3763152974074,18.8199865158599,5.09196819251581,7.2156042953854,5.05445516867349,6.10281382070775,4.94457683258274,8.04657365517155,7.74267158163002,7.9873553452929,12.042460349785,9.35230158079403,11.1505052226077,10.0894314588216,4.95806383745537,5.8622884852024,5.80638709741031,4.3839146485515,4.72680323683516,4.87553033131033,5.96768195583036,5.17489093728082,11.2354109970118,11.0659600059328,11.9348669746149,5.79952163099405,4.45599513964083,4.50155153652537,3.31442629819294,3.54175617145327,4.31947916084659,4.18561100550734,3.21928081679543,5.83826711835847,5.43047504714485,4.43252153013557,4.70199095365963,4.23979963533464,5.92785311285837,3.35516046900929,14.2997165023607,13.2746949969277,2.64335026387038,0.793351699990633,3.19932375802851,3.71578674976702,4.25262622362908,2.8235693447268,2.66853652613844,3.42406127002606,1.42358718463353,2.30578536613615,2.01068167040216,3.97912944082302,3.11942539390592,2.69645822596266,1.94524244887225,2.98711909881551,5.50036912763937,5.59817711787671,2.25415471346161,4.68398054044223,3.29719228184964,6.0316805105674,4.17361145020098,3.09981310757165,3.29697328466887,2.34454611451421,2.96452627087149,8.67594549723689,6.87956482896211,7.42044970870017,6.28866376304359,7.47649195232492,6.11102044275408,5.17853047411459,6.97181475132652,6.58947391651396,11.5014565221884,3.34926852901653,3.74445207737473,4.79899868099512,3.40855085691633,1.92977408545347,10.9004382198297,5.30575952957357,3.7481944581666,4.58311731593008,7.74477819352057,6.86775655511445,5.95109102215034,8.00047956216975,9.61574379047765,12.1805579306826,11.1618338060241,10.4872521418072,9.15230403889247,6.79850575333104,4.52373851817817,2.17562273527484,3.44234991113325,2.75936746304733,11.7201930691088,16.9956945558695,1.63934945376675,2.52470927204373,6.62567260774139,10.5418460960092,7.97066571611356,10.9925647058174,8.91194696329577,12.4553673547086,5.66734982344852,8.47541987942804,11.4633455604492,17.9939937196212,4.68402281187286,4.62970569534864,7.4928001302645,4.94910368917606,3.98235415019888,5.09839335925461,3.93020624054176,4.14931175462976,3.2483208216885,3.3817866273832,6.20227903603731,5.08947221268508,5.70395805415554,6.0046984007805,4.21674434299995,2.06271086496374,8.5109901438447,5.40183282093931,6.46793418913772,2.57204442037911,5.32020700926821,8.20496560969525,8.55654907131029,12.178597964584,7.27482294997502,12.7099242518292,2.20528398054962,8.90385765883992,8.39615018818709,7.59942854094764,7.63983001620073,9.68431308495861,4.37221254944776,10.3838169125885,11.4483490134561,5.98521917093345,7.40778109478847,14.1276342753518,14.8996708215917,11.2101304871196,9.68877050964975,6.85762116385924,8.84479832348312,4.77335309007557,4.58687190692646,4.47302827679067,4.9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| |||
|short_description=p3@Hp1bp3 | |||
}} |
Latest revision as of 14:06, 26 September 2015
Short description: | p3@Hp1bp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hp1bp3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000137851, ENSMUST00000165861, NM_001122897, uc008vkl.2_5end |
EntrezGene: | Hp1bp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 4.93e-10 | 33 |
neuronal stem cell | 4.93e-10 | 33 |
neuroblast | 4.93e-10 | 33 |
electrically signaling cell | 4.93e-10 | 33 |
CNS neuron (sensu Vertebrata) | 5.98e-10 | 23 |
neuroblast (sensu Vertebrata) | 5.98e-10 | 23 |
electrically responsive cell | 1.93e-07 | 39 |
electrically active cell | 1.93e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.02e-14 | 75 |
central nervous system | 3.35e-14 | 73 |
ectoderm-derived structure | 1.02e-13 | 95 |
ectoderm | 1.02e-13 | 95 |
presumptive ectoderm | 1.02e-13 | 95 |
regional part of nervous system | 2.87e-13 | 54 |
neurectoderm | 3.74e-13 | 64 |
neural plate | 3.74e-13 | 64 |
presumptive neural plate | 3.74e-13 | 64 |
gray matter | 1.81e-12 | 34 |
neural tube | 2.34e-12 | 52 |
neural rod | 2.34e-12 | 52 |
future spinal cord | 2.34e-12 | 52 |
neural keel | 2.34e-12 | 52 |
ecto-epithelium | 3.11e-12 | 73 |
pre-chordal neural plate | 8.71e-11 | 49 |
brain | 1.61e-10 | 47 |
future brain | 1.61e-10 | 47 |
brain grey matter | 2.76e-10 | 29 |
regional part of telencephalon | 2.76e-10 | 29 |
telencephalon | 2.76e-10 | 29 |
anterior neural tube | 2.76e-10 | 40 |
regional part of brain | 4.97e-10 | 46 |
regional part of forebrain | 6.79e-10 | 39 |
forebrain | 6.79e-10 | 39 |
future forebrain | 6.79e-10 | 39 |
structure with developmental contribution from neural crest | 8.14e-08 | 92 |
hemopoietic organ | 7.03e-07 | 29 |
immune organ | 7.03e-07 | 29 |
cerebral cortex | 8.02e-07 | 21 |
cerebral hemisphere | 8.02e-07 | 21 |
pallium | 8.02e-07 | 21 |