FFCP PHASE1:Mm9::chr5:135484679..135484700,-: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=451|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:135484679..135484700,-|id=chr5:135484679..135484700,-|ontology_enrichment_celltype=CL:0002563!1.12e-08!9;CL:0002251!1.12e-08!9;CL:0000144!1.61e-08!121;CL:0000012!1.61e-08!121;CL:0000063!1.64e-08!66;CL:0000066!4.10e-08!25;CL:0002371!7.36e-08!118;CL:0002076!3.09e-07!15;CL:0000075!7.89e-07!7|ontology_enrichment_celltype_v019_2=CL:0000066,6.89e-30,25;CL:0002563,2.93e-26,9;CL:0002251,2.93e-26,9;CL:0002076,1.12e-25,15;CL:0000223,3.39e-22,20;CL:0000239,6.42e-18,6;CL:0000677,6.42e-18,6;CL:0000584,6.42e-18,6;CL:0000075,2.96e-15,7;CL:0002250,6.63e-10,3;CL:0000682,5.94e-09,3;CL:0000068,4.96e-08,3;CL:0002202,4.96e-08,3;CL:0000069,4.96e-08,3;CL:0002632,4.96e-08,3;CL:0002368,4.96e-08,3;CL:0000307,4.96e-08,3;CL:0000377,4.96e-08,3;CL:0000791,3.06e-07,9;CL:0000789,3.06e-07,9;CL:0002420,3.06e-07,9;CL:0002419,3.06e-07,9;CL:0000790,3.06e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,4.92e-09,3;DOID:4045,4.92e-09,3;DOID:0050686,1.70e-07,6|ontology_enrichment_uberon=UBERON:0001242!2.10e-10!13;UBERON:0000060!2.10e-10!13;UBERON:0001262!2.10e-10!13;UBERON:0004786!2.10e-10!13;UBERON:0000344!2.95e-10!15;UBERON:0000485!6.38e-10!11;UBERON:0003350!1.12e-08!9;UBERON:0004808!1.12e-08!9;UBERON:0001277!1.12e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0003350,2.93e-26,9;UBERON:0004808,2.93e-26,9;UBERON:0001277,2.93e-26,9;UBERON:0000485,7.94e-26,11;UBERON:0001242,1.79e-21,13;UBERON:0001262,1.79e-21,13;UBERON:0004786,1.79e-21,13;UBERON:0000344,2.45e-18,15;UBERON:0004923,1.07e-10,24;UBERON:0000490,3.90e-09,66;UBERON:0003126,4.96e-08,3;UBERON:0001005,4.96e-08,3;UBERON:0007196,4.96e-08,3;UBERON:0001558,4.96e-08,3;UBERON:0000160,7.84e-08,31|phase1_expression=1.44133962394315,6.63053274514786,6.3699893514535,13.0059610861937,8.01433167914156,4.19698179779725,2.10251376535973,1.93684985162364,0.563154888606667,1.63845168425395,0,0.239316476986009,1.54080656938085,1.39872643870396,0.333109761815663,0,0,0.157731082679119,0.411343300817216,0,0.0850432901510698,0.0992909512008853,0.261199789138935,0.159992422793407,0.22940928106717,1.14846392823004,4.30761996159075,3.878482188346,0.570070258369122,0.756090389279792,1.33038306393183,1.27006134691926,0.61506478758457,0,11.554064790051,4.3221007793208,7.9626048942324,1.67412652294763,1.5626706890476,2.09409497589519,1.76469446409304,1.36609096991689,1.45653105909346,0.125896817975577,0.405507724878058,0,0,0,0.439372365468944,0,0,0,0.671130424230945,0,1.00828139742739,0,0,0,0.404632921719196,0,1.26766280701236,0,0.889294796111139,0,0,0,0,0,0.103689612308478,0.540023753326763,0.420649922702764,0.285650984403804,0.662605622854841,0.244981598429908,0.287536413054709,0.919218786610021,0,0,0,0.395658863190582,0.823388792421687,0,0,0,0,0.589257170947335,0.142371680799103,0,0.075726193333184,0,19.4209207430124,0.860423876981386,0,0,0,0,0.140444420131752,0.340860645156116,0,0,0.985903938436763,0,0,0,1.29894624606728,1.26679932737549,1.01104889002957,0,0,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.23517741427141,0,0,0,0,0,0.220841518460394,0,0,0,0,0,0.718890747035522,1.19980546198682,0,0,0,0.376963056338593,0,0,0,0,0.101839363850316,0.124406970610093,0.505445516867349,0.420883711772948,0.260240885925407,0.689706313300419,0.180062129805349,0,0,0,0,0,0.215567992932842,0,0.351902248327898,0.43839146485515,0.278047249225598,0,0,0,0.702213187313235,0.51469581422943,0.284163499395593,0.207125772535502,0,0,0,0,0.154267112887378,0,0,0,0,0,0.0810688095458557,0,0,0,0,0.102904612379284,0.330418782983798,0,0,0.696710015581316,0.515469845288373,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0,0,0,0.189667900953082,0.342745537829186,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0.157635144106191,0.221464689648775,0,0.163863314715738,0,0.289298117163023,0,0,0,0.827810238914197,0,0,0,0,0,0.390438744296638,0,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0,0,0.141940085208269,0.35613120733451,0,0.329940245945071,0,0,0,0.188605079755898,0,0.614870295887855,0.258428293168221,0,0.356497378384721,0,1.05418608574999,0,0.680879211507576,0.18006109403131,0.388076051348264,0.643011105094777,0.532020700926821,0.535106452806212,0.987294123612726,0.608929898229199,0,0,0.220528398054962,0.16488625294148,0,0.120625849856312,0,0.164140899745061,0,0,0,0.206386867963223,0,0,0.136694227721025,0,0.339956859987711,0.559805809294632,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0,0,0.388844919875379,0,0,0.149516546043979,0,0,0.129159823477731,0,0.117357238645754,0.13020438484395,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0.233753804363138,0.226730383615211,0,0.179427713218951,0,0.19318959403219,0,0,0.643105137237198,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0,0.341467211508268,0,0.209613162627982,0.367687016900028,0.222246727801615,0,0.320919209591815,0,0.50695859978048,0.188626341386076,0.0936415074698824,0.128050304809739,0,0.476293691283074,0.231768651889711,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0.118635018124174,0,0,0.154936841185966,0,0,0.233931608445408,0,0,0.661774257358546,0|short_description=p@chr5:135484679..135484700,-}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=451 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr5:135484679..135484700,- | |||
|description=CAGE_peak_at_chr5:135484679..135484700,- | |||
|id=chr5:135484679..135484700,- | |||
|ontology_enrichment_celltype=CL:0002563!1.12e-08!9;CL:0002251!1.12e-08!9;CL:0000144!1.61e-08!121;CL:0000012!1.61e-08!121;CL:0000063!1.64e-08!66;CL:0000066!4.10e-08!25;CL:0002371!7.36e-08!118;CL:0002076!3.09e-07!15;CL:0000075!7.89e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.89e-30,25;CL:0002563,2.93e-26,9;CL:0002251,2.93e-26,9;CL:0002076,1.12e-25,15;CL:0000223,3.39e-22,20;CL:0000239,6.42e-18,6;CL:0000677,6.42e-18,6;CL:0000584,6.42e-18,6;CL:0000075,2.96e-15,7;CL:0002250,6.63e-10,3;CL:0000682,5.94e-09,3;CL:0000068,4.96e-08,3;CL:0002202,4.96e-08,3;CL:0000069,4.96e-08,3;CL:0002632,4.96e-08,3;CL:0002368,4.96e-08,3;CL:0000307,4.96e-08,3;CL:0000377,4.96e-08,3;CL:0000791,3.06e-07,9;CL:0000789,3.06e-07,9;CL:0002420,3.06e-07,9;CL:0002419,3.06e-07,9;CL:0000790,3.06e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,4.92e-09,3;DOID:4045,4.92e-09,3;DOID:0050686,1.70e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0001242!2.10e-10!13;UBERON:0000060!2.10e-10!13;UBERON:0001262!2.10e-10!13;UBERON:0004786!2.10e-10!13;UBERON:0000344!2.95e-10!15;UBERON:0000485!6.38e-10!11;UBERON:0003350!1.12e-08!9;UBERON:0004808!1.12e-08!9;UBERON:0001277!1.12e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,2.93e-26,9;UBERON:0004808,2.93e-26,9;UBERON:0001277,2.93e-26,9;UBERON:0000485,7.94e-26,11;UBERON:0001242,1.79e-21,13;UBERON:0001262,1.79e-21,13;UBERON:0004786,1.79e-21,13;UBERON:0000344,2.45e-18,15;UBERON:0004923,1.07e-10,24;UBERON:0000490,3.90e-09,66;UBERON:0003126,4.96e-08,3;UBERON:0001005,4.96e-08,3;UBERON:0007196,4.96e-08,3;UBERON:0001558,4.96e-08,3;UBERON:0000160,7.84e-08,31 | |||
|phase1_expression=1.44133962394315,6.63053274514786,6.3699893514535,13.0059610861937,8.01433167914156,4.19698179779725,2.10251376535973,1.93684985162364,0.563154888606667,1.63845168425395,0,0.239316476986009,1.54080656938085,1.39872643870396,0.333109761815663,0,0,0.157731082679119,0.411343300817216,0,0.0850432901510698,0.0992909512008853,0.261199789138935,0.159992422793407,0.22940928106717,1.14846392823004,4.30761996159075,3.878482188346,0.570070258369122,0.756090389279792,1.33038306393183,1.27006134691926,0.61506478758457,0,11.554064790051,4.3221007793208,7.9626048942324,1.67412652294763,1.5626706890476,2.09409497589519,1.76469446409304,1.36609096991689,1.45653105909346,0.125896817975577,0.405507724878058,0,0,0,0.439372365468944,0,0,0,0.671130424230945,0,1.00828139742739,0,0,0,0.404632921719196,0,1.26766280701236,0,0.889294796111139,0,0,0,0,0,0.103689612308478,0.540023753326763,0.420649922702764,0.285650984403804,0.662605622854841,0.244981598429908,0.287536413054709,0.919218786610021,0,0,0,0.395658863190582,0.823388792421687,0,0,0,0,0.589257170947335,0.142371680799103,0,0.075726193333184,0,19.4209207430124,0.860423876981386,0,0,0,0,0.140444420131752,0.340860645156116,0,0,0.985903938436763,0,0,0,1.29894624606728,1.26679932737549,1.01104889002957,0,0,0,0.173485326766136,0,0.230615497256059,0.150722640552623,0.23517741427141,0,0,0,0,0,0.220841518460394,0,0,0,0,0,0.718890747035522,1.19980546198682,0,0,0,0.376963056338593,0,0,0,0,0.101839363850316,0.124406970610093,0.505445516867349,0.420883711772948,0.260240885925407,0.689706313300419,0.180062129805349,0,0,0,0,0,0.215567992932842,0,0.351902248327898,0.43839146485515,0.278047249225598,0,0,0,0.702213187313235,0.51469581422943,0.284163499395593,0.207125772535502,0,0,0,0,0.154267112887378,0,0,0,0,0,0.0810688095458557,0,0,0,0,0.102904612379284,0.330418782983798,0,0,0.696710015581316,0.515469845288373,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0,0,0,0.189667900953082,0.342745537829186,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0,0,0,0,0,0,0.157635144106191,0.221464689648775,0,0.163863314715738,0,0.289298117163023,0,0,0,0.827810238914197,0,0,0,0,0,0.390438744296638,0,0.238968797952552,0.222798674082394,0,0,0.292255857911312,0,0,0.141940085208269,0.35613120733451,0,0.329940245945071,0,0,0,0.188605079755898,0,0.614870295887855,0.258428293168221,0,0.356497378384721,0,1.05418608574999,0,0.680879211507576,0.18006109403131,0.388076051348264,0.643011105094777,0.532020700926821,0.535106452806212,0.987294123612726,0.608929898229199,0,0,0.220528398054962,0.16488625294148,0,0.120625849856312,0,0.164140899745061,0,0,0,0.206386867963223,0,0,0.136694227721025,0,0.339956859987711,0.559805809294632,0.138199973804424,0,0.158167996790568,0.203319467126849,0.108005340821801,0.209088296014469,0.218362563746178,0.134864346384821,0,0,0.388844919875379,0,0,0.149516546043979,0,0,0.129159823477731,0,0.117357238645754,0.13020438484395,0.209718688851422,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0.233753804363138,0.226730383615211,0,0.179427713218951,0,0.19318959403219,0,0,0.643105137237198,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0.103787347584177,0,0.341467211508268,0,0.209613162627982,0.367687016900028,0.222246727801615,0,0.320919209591815,0,0.50695859978048,0.188626341386076,0.0936415074698824,0.128050304809739,0,0.476293691283074,0.231768651889711,0,0,0,0,0,0,0,0,0.0846146078916765,0,0,0.135804113845862,0,0.118635018124174,0,0,0.154936841185966,0,0,0.233931608445408,0,0,0.661774257358546,0 | |||
|short_description=p@chr5:135484679..135484700,- | |||
}} |
Latest revision as of 10:03, 6 August 2015
Short description: | p@chr5:135484679..135484700, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:135484679..135484700, - |
Coexpression cluster: | MCL_coexpression_mm9:451 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.89e-30 | 25 |
intestinal epithelial cell | 2.93e-26 | 9 |
epithelial cell of alimentary canal | 2.93e-26 | 9 |
endo-epithelial cell | 1.12e-25 | 15 |
endodermal cell | 3.39e-22 | 20 |
brush border epithelial cell | 6.42e-18 | 6 |
gut absorptive cell | 6.42e-18 | 6 |
enterocyte | 6.42e-18 | 6 |
columnar/cuboidal epithelial cell | 2.96e-15 | 7 |
intestinal crypt stem cell | 6.63e-10 | 3 |
M cell of gut | 5.94e-09 | 3 |
duct epithelial cell | 4.96e-08 | 3 |
epithelial cell of tracheobronchial tree | 4.96e-08 | 3 |
branched duct epithelial cell | 4.96e-08 | 3 |
epithelial cell of lower respiratory tract | 4.96e-08 | 3 |
respiratory epithelial cell | 4.96e-08 | 3 |
tracheal epithelial cell | 4.96e-08 | 3 |
tracheoblast | 4.96e-08 | 3 |
mature alpha-beta T cell | 3.06e-07 | 9 |
alpha-beta T cell | 3.06e-07 | 9 |
immature T cell | 3.06e-07 | 9 |
mature T cell | 3.06e-07 | 9 |
immature alpha-beta T cell | 3.06e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 2.93e-26 | 9 |
gastrointestinal system epithelium | 2.93e-26 | 9 |
intestinal epithelium | 2.93e-26 | 9 |
simple columnar epithelium | 7.94e-26 | 11 |
intestinal mucosa | 1.79e-21 | 13 |
wall of intestine | 1.79e-21 | 13 |
gastrointestinal system mucosa | 1.79e-21 | 13 |
mucosa | 2.45e-18 | 15 |
organ component layer | 1.07e-10 | 24 |
unilaminar epithelium | 3.90e-09 | 66 |
trachea | 4.96e-08 | 3 |
respiratory airway | 4.96e-08 | 3 |
tracheobronchial tree | 4.96e-08 | 3 |
lower respiratory tract | 4.96e-08 | 3 |
intestine | 7.84e-08 | 31 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 4.92e-09 | 3 |
muscle cancer | 4.92e-09 | 3 |
organ system cancer | 1.70e-07 | 6 |