FFCP PHASE1:Mm9::chr6:122559982..122559997,-: Difference between revisions
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{{FFCP|EntrezGene=14562|HGNC=|MCL_coexpression_id=1257|UniProt=Q07104|association_with_transcript=91bp_to_NM_008108,uc009dpm.1_5end|description=CAGE_peak_2_at_Gdf3_5end|id=chr6:122559982..122559997,-|ontology_enrichment_celltype=CL:0000049!1.73e-07!19|ontology_enrichment_celltype_v019_2=CL:0002092,1.79e-11,3;CL:0002540,1.79e-11,3;CL:0002027,4.18e-11,3;CL:0002006,4.18e-11,3;CL:0002024,4.18e-11,3;CL:0000049,4.58e-10,19;CL:0000763,1.55e-09,16;CL:0000557,9.32e-08,7;CL:0002320,6.64e-07,46;CL:0000134,6.64e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001474!4.80e-12!22;UBERON:0004765!4.80e-12!22;UBERON:0001434!4.80e-12!22;UBERON:0002371!1.93e-10!16;UBERON:0002405!7.99e-10!70;UBERON:0002390!6.37e-08!45;UBERON:0003061!6.37e-08!45;UBERON:0002193!6.88e-08!48;UBERON:0002204!2.31e-07!32;UBERON:0002106!2.76e-07!6;UBERON:0004457!2.76e-07!6;UBERON:0000042!2.76e-07!6;UBERON:0004854!2.76e-07!6;UBERON:0009034!2.76e-07!6;UBERON:0002095!2.76e-07!6;UBERON:0004782!2.76e-07!6;UBERON:0003281!2.76e-07!6;UBERON:0009664!2.76e-07!6;UBERON:0002296!2.76e-07!6;UBERON:0005602!2.76e-07!6;UBERON:0001179!2.76e-07!6;UBERON:0006293!2.76e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0001474,5.79e-20,22;UBERON:0004765,5.79e-20,22;UBERON:0001434,5.79e-20,22;UBERON:0002371,6.63e-20,16;UBERON:0002193,8.02e-15,48;UBERON:0002405,8.02e-15,48;UBERON:0002390,5.41e-14,45;UBERON:0003061,5.41e-14,45;UBERON:0002106,1.31e-13,6;UBERON:0004457,1.31e-13,6;UBERON:0000042,1.31e-13,6;UBERON:0004854,1.31e-13,6;UBERON:0009034,1.31e-13,6;UBERON:0002095,1.31e-13,6;UBERON:0004782,1.31e-13,6;UBERON:0003281,1.31e-13,6;UBERON:0009664,1.31e-13,6;UBERON:0002296,1.31e-13,6;UBERON:0005602,1.31e-13,6;UBERON:0001179,1.31e-13,6;UBERON:0006293,1.31e-13,6;UBERON:0002204,5.60e-13,32;UBERON:0003887,4.69e-08,10;UBERON:0003081,1.00e-07,87;UBERON:0002384,6.64e-07,46|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,3.99731714178795,5.26435695213547,4.89693314689703,0.157731082679119,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,8.54904731417329,14.8329954385046,4.9733608046227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0.186399445825301,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.11418387971906,1.8125651855302,0.29688427812965,0.346970653532272,0,0,0,0,0,0,0,3.5384422077995,0.485300549842228,1.10420759230197,0.969750506270444,0,0,0,0,0.838705871541442,1.19980546198682,0.381210681219194,0,0,0,0,0,0,0,0,0.622034853050465,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0.175951124163949,0,0,0,0,0,3.51106593656617,2.05878325691772,2.27330799516474,0.207125772535502,0.234526059981096,0,0,0.393528463494808,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0.190225626112559,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296452627087149,4.00428253718626,2.75182593158484,2.47348323623339,1.62288097110802,1.68824011826692,1.2731292589071,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0,0,0,0.37898282354097,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,9.04747703635634,0.54390568381871,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.534196811001766,0.162886959353576,0.494910368917606,0,0.242780636154981,0.302323556964751,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0.238744688006273,0,0,0,3.41741761595705,0.412773735926445,1.48155621895769,3.01389531207506,4.51090951479383,4.80434163733698,0.849892149969277,1.11961161858926,0.829199842826543,0,0,0,0,0,0.218362563746178,0.134864346384821,0,0,0,0,0,0.598066184175915,1.15820943319968,0,0,0.168956125490778,0,0.13020438484395,0,0,0,0.632022241256357,0,0,0,0,0,0.360586348559907,0,0,0.228620419965,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0.187682475451182,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59609949360412,0.512200817262403,0.243106717068294,0.628839487883947,0.183843508450014,0,0.206035057238894,0,0,0,0.188626341386076,0.0936415074698824,0,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0,0,0.169229215783353,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0,0,0|short_description=p2@Gdf3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14562 | |||
|HGNC= | |||
|MCL_coexpression_id=1257 | |||
|TSSclassifier=NA | |||
|UniProt=Q07104 | |||
|association_with_transcript=91bp_to_NM_008108,uc009dpm.1_5end | |||
|cluster_id=chr6:122559982..122559997,- | |||
|description=CAGE_peak_2_at_Gdf3_5end | |||
|id=chr6:122559982..122559997,- | |||
|ontology_enrichment_celltype=CL:0000049!1.73e-07!19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002092,1.79e-11,3;CL:0002540,1.79e-11,3;CL:0002027,4.18e-11,3;CL:0002006,4.18e-11,3;CL:0002024,4.18e-11,3;CL:0000049,4.58e-10,19;CL:0000763,1.55e-09,16;CL:0000557,9.32e-08,7;CL:0002320,6.64e-07,46;CL:0000134,6.64e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!4.80e-12!22;UBERON:0004765!4.80e-12!22;UBERON:0001434!4.80e-12!22;UBERON:0002371!1.93e-10!16;UBERON:0002405!7.99e-10!70;UBERON:0002390!6.37e-08!45;UBERON:0003061!6.37e-08!45;UBERON:0002193!6.88e-08!48;UBERON:0002204!2.31e-07!32;UBERON:0002106!2.76e-07!6;UBERON:0004457!2.76e-07!6;UBERON:0000042!2.76e-07!6;UBERON:0004854!2.76e-07!6;UBERON:0009034!2.76e-07!6;UBERON:0002095!2.76e-07!6;UBERON:0004782!2.76e-07!6;UBERON:0003281!2.76e-07!6;UBERON:0009664!2.76e-07!6;UBERON:0002296!2.76e-07!6;UBERON:0005602!2.76e-07!6;UBERON:0001179!2.76e-07!6;UBERON:0006293!2.76e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,5.79e-20,22;UBERON:0004765,5.79e-20,22;UBERON:0001434,5.79e-20,22;UBERON:0002371,6.63e-20,16;UBERON:0002193,8.02e-15,48;UBERON:0002405,8.02e-15,48;UBERON:0002390,5.41e-14,45;UBERON:0003061,5.41e-14,45;UBERON:0002106,1.31e-13,6;UBERON:0004457,1.31e-13,6;UBERON:0000042,1.31e-13,6;UBERON:0004854,1.31e-13,6;UBERON:0009034,1.31e-13,6;UBERON:0002095,1.31e-13,6;UBERON:0004782,1.31e-13,6;UBERON:0003281,1.31e-13,6;UBERON:0009664,1.31e-13,6;UBERON:0002296,1.31e-13,6;UBERON:0005602,1.31e-13,6;UBERON:0001179,1.31e-13,6;UBERON:0006293,1.31e-13,6;UBERON:0002204,5.60e-13,32;UBERON:0003887,4.69e-08,10;UBERON:0003081,1.00e-07,87;UBERON:0002384,6.64e-07,46 | |||
|phase1_expression=0,0,0,0,0,0,0.233612640595526,0,0,0,0,0,0,0,3.99731714178795,5.26435695213547,4.89693314689703,0.157731082679119,0,0.42438965179803,0,0,0,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0,0,8.54904731417329,14.8329954385046,4.9733608046227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0.186399445825301,0,0,0,0,0,0,0,0,0.280888840263504,0,0,0,0,0,0,0,0,0,0,0.11418387971906,1.8125651855302,0.29688427812965,0.346970653532272,0,0,0,0,0,0,0,3.5384422077995,0.485300549842228,1.10420759230197,0.969750506270444,0,0,0,0,0.838705871541442,1.19980546198682,0.381210681219194,0,0,0,0,0,0,0,0,0.622034853050465,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0.175951124163949,0,0,0,0,0,3.51106593656617,2.05878325691772,2.27330799516474,0.207125772535502,0.234526059981096,0,0,0.393528463494808,0,0,0,0,0,0,0.0810688095458557,0,0.219550115291051,0,0,0,0,0,0,0,0,0,0,0.190225626112559,0.474529061544512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296452627087149,4.00428253718626,2.75182593158484,2.47348323623339,1.62288097110802,1.68824011826692,1.2731292589071,0.287696137450811,0.324270453550071,0.274561413188081,0,0,0,0,0,0,0,0.37898282354097,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,9.04747703635634,0.54390568381871,0,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.534196811001766,0.162886959353576,0.494910368917606,0,0.242780636154981,0.302323556964751,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0.220528398054962,0,0,0,0.238744688006273,0,0,0,3.41741761595705,0.412773735926445,1.48155621895769,3.01389531207506,4.51090951479383,4.80434163733698,0.849892149969277,1.11961161858926,0.829199842826543,0,0,0,0,0,0.218362563746178,0.134864346384821,0,0,0,0,0,0.598066184175915,1.15820943319968,0,0,0.168956125490778,0,0.13020438484395,0,0,0,0.632022241256357,0,0,0,0,0,0.360586348559907,0,0,0.228620419965,0,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0,0.187682475451182,0.73260649706906,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59609949360412,0.512200817262403,0.243106717068294,0.628839487883947,0.183843508450014,0,0.206035057238894,0,0,0,0.188626341386076,0.0936415074698824,0,0.114870937911227,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0,0,0.169229215783353,0,0,0.135804113845862,0,0,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p2@Gdf3 | |||
}} |
Latest revision as of 14:52, 26 September 2015
Short description: | p2@Gdf3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gdf3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1257 |
Association with transcript: | 91bp_to_NM_008108, uc009dpm.1_5end |
EntrezGene: | Gdf3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow cell | 1.79e-11 | 3 |
mesenchymal stem cell of the bone marrow | 1.79e-11 | 3 |
CD9-positive, CD41-positive megakaryocyte cell | 4.18e-11 | 3 |
Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 4.18e-11 | 3 |
Kit-positive megakaryocyte progenitor cell | 4.18e-11 | 3 |
common myeloid progenitor | 4.58e-10 | 19 |
myeloid cell | 1.55e-09 | 16 |
granulocyte monocyte progenitor cell | 9.32e-08 | 7 |
connective tissue cell | 6.64e-07 | 46 |
mesenchymal cell | 6.64e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
bone element | 5.79e-20 | 22 |
skeletal element | 5.79e-20 | 22 |
skeletal system | 5.79e-20 | 22 |
bone marrow | 6.63e-20 | 16 |
hemolymphoid system | 8.02e-15 | 48 |
immune system | 8.02e-15 | 48 |
hematopoietic system | 5.41e-14 | 45 |
blood island | 5.41e-14 | 45 |
spleen | 1.31e-13 | 6 |
cavity lining | 1.31e-13 | 6 |
serous membrane | 1.31e-13 | 6 |
gastrointestinal system mesentery | 1.31e-13 | 6 |
stomach region | 1.31e-13 | 6 |
mesentery | 1.31e-13 | 6 |
gastrointestinal system serosa | 1.31e-13 | 6 |
mesentery of stomach | 1.31e-13 | 6 |
gut mesentery | 1.31e-13 | 6 |
dorsal mesentery | 1.31e-13 | 6 |
dorsal mesogastrium | 1.31e-13 | 6 |
peritoneal cavity | 1.31e-13 | 6 |
spleen primordium | 1.31e-13 | 6 |
musculoskeletal system | 5.60e-13 | 32 |
intraembryonic coelom | 4.69e-08 | 10 |
lateral plate mesoderm | 1.00e-07 | 87 |
connective tissue | 6.64e-07 | 46 |