FFCP PHASE1:Mm9::chr14:32019852..32019895,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:32019852..32019895,-
|short_description=p1@Nisch
|description=CAGE_peak_1_at_Nisch_5end
|association_with_transcript=0bp_to_ENSMUST00000164617,ENSMUST0000...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=64652 | |EntrezGene=64652 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1662 | |||
|TSSclassifier=NA | |||
|UniProt=Q80TM9 | |UniProt=Q80TM9 | ||
|association_with_transcript=0bp_to_ENSMUST00000164617,ENSMUST00000164989,ENSMUST00000165981,ENSMUST00000171735_5end | |||
|cluster_id=chr14:32019852..32019895,- | |||
|description=CAGE_peak_1_at_Nisch_5end | |||
|id=chr14:32019852..32019895,- | |||
|ontology_enrichment_celltype=CL:0000055!1.70e-13!50;CL:0000221!4.32e-13!44;CL:0000133!4.32e-13!44;CL:0002319!4.64e-13!43;CL:0000393!2.80e-11!39;CL:0000211!2.80e-11!39;CL:0000540!3.86e-10!33;CL:0000047!3.86e-10!33;CL:0000031!3.86e-10!33;CL:0000404!3.86e-10!33;CL:0000117!7.79e-07!23;CL:0000337!7.79e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.32e-13,44;CL:0000133,4.32e-13,44;CL:0002319,4.64e-13,43;CL:0000393,2.80e-11,39;CL:0000211,2.80e-11,39;CL:0000540,3.86e-10,33;CL:0000047,3.86e-10,33;CL:0000031,3.86e-10,33;CL:0000404,3.86e-10,33;CL:0000117,7.79e-07,23;CL:0000337,7.79e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.50e-16!73;UBERON:0005743!2.50e-16!73;UBERON:0000073!6.79e-16!75;UBERON:0001016!6.79e-16!75;UBERON:0004121!6.73e-14!102;UBERON:0000924!6.73e-14!102;UBERON:0006601!6.73e-14!102;UBERON:0002346!5.00e-12!71;UBERON:0003075!5.00e-12!71;UBERON:0007284!5.00e-12!71;UBERON:0000025!2.67e-11!114;UBERON:0004111!3.45e-10!122;UBERON:0001049!1.43e-09!52;UBERON:0005068!1.43e-09!52;UBERON:0006241!1.43e-09!52;UBERON:0007135!1.43e-09!52;UBERON:0000033!6.74e-09!63;UBERON:0000955!1.46e-08!50;UBERON:0006238!1.46e-08!50;UBERON:0003056!1.50e-08!49;UBERON:0002616!1.94e-08!49;UBERON:0003080!1.32e-07!40;UBERON:0002780!2.95e-07!39;UBERON:0001890!2.95e-07!39;UBERON:0006240!2.95e-07!39;UBERON:0000468!4.23e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.07e-16,92;UBERON:0001017,2.50e-16,73;UBERON:0001016,6.79e-16,75;UBERON:0004121,2.22e-13,95;UBERON:0000924,2.22e-13,95;UBERON:0006601,2.22e-13,95;UBERON:0002346,1.03e-11,64;UBERON:0003075,1.03e-11,64;UBERON:0007284,1.03e-11,64;UBERON:0000025,2.67e-11,114;UBERON:0004111,3.45e-10,122;UBERON:0000073,6.38e-10,54;UBERON:0001049,1.43e-09,52;UBERON:0005068,1.43e-09,52;UBERON:0006241,1.43e-09,52;UBERON:0007135,1.43e-09,52;UBERON:0010371,2.63e-09,73;UBERON:0003056,1.50e-08,49;UBERON:0000955,2.80e-08,47;UBERON:0006238,2.80e-08,47;UBERON:0002616,3.70e-08,46;UBERON:0003080,1.32e-07,40;UBERON:0000922,2.65e-07,320;UBERON:0002780,2.95e-07,39;UBERON:0001890,2.95e-07,39;UBERON:0006240,2.95e-07,39 | |||
|phase1_expression=179.847155298684,15.3549179361319,8.64498554840118,13.9133537201142,12.0214975187123,53.5534877398928,56.5342590241172,83.6719135901414,40.6879407018317,51.0260667381946,46.9137232937884,52.4900806189314,84.7443613159468,91.4417409302713,26.3156711834374,30.3712901084739,28.682037003254,50.6316775399971,62.5241817242169,64.9316167250986,99.2455196062984,91.4469660560154,72.874741169763,27.3587042976725,22.0232909824483,11.4846392823004,18.9535278309993,26.7184328530502,17.29213117053,20.1624103807945,18.4036323843903,81.2839262028328,79.3433575984096,63.3926724061755,46.7939623997065,33.413163717057,42.8755648150975,89.9843006084352,51.5681327385708,79.5756090840173,100.587584453303,102.456822743767,90.7904360168257,231.901938711013,230.024256937079,274.035300977391,319.998059838348,255.525483277883,275.047100783559,268.118830823437,199.060691551266,263.067192787898,56.3749556353994,75.4376627691798,66.5465722302079,138.662836023375,165.043261404724,161.921036975117,241.3635378055,287.242101744714,255.43405561299,293.778209303938,233.88453137723,97.6391193250318,98.8866362566974,95.2043354027774,198.634873273702,176.356202142594,176.583409761337,179.69290391948,179.196867071377,203.097849911104,183.320888989839,161.442873365309,186.515286601488,193.035945188104,172.88193316904,173.016343105429,177.569152444217,266.937846365912,269.339622765494,246.392024273347,135.124571516668,215.538079642133,197.109739632085,215.962753152198,210.710087582672,232.999307281626,93.0674916064832,163.763570751404,134.78698724628,64.531790773604,27.8788246820178,35.0807074564581,48.0834548911275,38.9783391774682,52.2453242890117,126.800159998075,80.2738754222865,87.274874904054,171.969815547327,159.124831993754,160.527301015187,156.434674693733,66.679240631454,73.9810807187288,65.2126534069071,45.3310002484668,76.3866756759157,154.379824627418,189.966432808919,193.33557872821,164.659465040826,155.244319769201,183.673560545971,119.88592812851,171.553307607655,82.2770340874297,78.7303391235388,143.648962753299,77.0736899426773,81.9439177798525,82.0123749359738,119.454565180711,128.809724690275,34.7421595083684,49.9629069189688,37.7938720525847,49.4303183314222,223.188052713186,197.182759814828,143.371615760778,176.257860674968,179.000820131231,177.658778098424,199.070029784139,193.2911125879,101.018460135396,148.853704717434,77.8634866779954,229.402340943247,178.174130935942,186.364304348536,183.709172941737,193.69991308383,186.149235573887,189.277483610652,160.39608985819,278.298278876299,260.020860230752,258.824103645169,187.850742690432,216.876854395966,193.976456752847,172.033866037041,197.441992683945,40.7283648641676,43.2344483952721,43.7611789069213,270.713384703901,255.164353259433,232.099997223248,281.962980081985,255.990265503372,223.378779460924,233.231546584659,223.471743365883,233.297154049605,222.978596632766,187.479243978327,166.596403616734,165.0597858032,149.952728743788,159.705638324842,189.260953707715,168.660659689647,16.5209391491899,30.6762657329711,224.165951312531,222.947204986021,185.569144303814,152.271061090624,127.644997166956,100.248904961319,53.1472548929853,73.7851317163569,94.7533737177016,88.5356300583121,99.2367203436321,60.2209003798328,54.8990646681723,56.5561216042403,156.665686187245,194.565216974368,206.255156281737,193.061458797358,184.448815296412,187.893861486163,194.768534342712,134.177624513458,124.342992450369,127.222476003376,44.7643466901595,95.9359357867541,106.534975351356,82.5243952452413,97.9814386306469,130.959197745562,131.641565370994,112.776885880718,86.4180758710939,74.9552658003462,86.2609239164127,108.293015771534,100.788168416003,62.6395617308837,45.2081482075219,48.2443521363367,175.330777468108,209.009027182845,226.358352277974,202.336142244024,223.894496867231,245.899185924586,246.137124676138,202.353592828537,297.772787216595,274.173285785183,274.900021165508,228.097734084307,186.499780415167,194.552983792133,96.5064217211342,114.764099285748,58.0281842162463,84.7125811155529,161.353342937731,170.77742736484,84.0986269782345,94.4241267744355,218.016179616633,208.884728198702,239.33539488114,218.417481328633,243.741749446139,179.753597050909,211.311186274295,213.054520417346,239.93968121354,177.690687981259,172.741083698463,215.103249230044,199.862299126838,193.180014000839,55.7529581027844,187.912212383956,162.347750090071,115.049098651098,138.791889653963,125.433540361122,126.113007066092,146.504092979435,134.043014272655,97.3393214442313,66.4137234022492,76.3203020036583,216.519589259409,214.45276299129,257.423780727681,256.561430932816,254.30589504302,269.515283396729,260.810197654362,270.669339762879,84.247143194872,103.16221851068,120.849562134119,59.8537098177573,131.270578903771,113.870802264358,94.4235241064809,95.2017218521355,68.7894774446448,155.942678990839,49.5525554313773,160.362596407424,110.375938312348,53.1199048753229,45.7925662865434,56.9657651284241,72.4108111773824,71.6551435897129,70.6201866140606,45.8241896647254,237.884667173014,208.605773272147,160.063915097909,154.098074162663,131.672625938945,136.482718541439,136.378201946804,81.6678538990172,73.1028449365712,86.9875038321696,24.8024893021044,211.864945744318,183.658924407378,227.896792739224,198.64780850875,216.432796753687,251.027133463268,189.056766793416,154.248095650221,52.9069224608953,46.9488910200321,108.707825496093,165.018325246194,149.239020760494,115.889374096193,110.459471226836,106.493206162758,93.5120597265358,95.4074345547769,97.129724850118,93.4295449590298,95.1799187691774,92.9748182257238,99.579256097741,111.266810876854,60.5370124252614,68.3716736392119,52.4826061165433,73.7013465838304,141.99435161366,138.321984407521,156.777790372779,86.1760883897845,109.844290783745,159.82477146063,152.367653283876,155.254684142076,154.324157744631,133.591091355275,135.215507632756,148.504950050997,124.738973293109,137.302149922214,136.68872230248,204.772436783581,281.312535747727,219.221949788308,174.793729572103,176.703896095389,133.28654362626,160.684384200568,157.822853844993,180.035676581008,154.39799638768,177.182030623278,163.161785298956,145.050695070848,157.245774306359,147.092235995326,141.459226311073,161.774519019018,140.05209405665,150.82343969401,157.944441304208,155.662640582979,139.850935253558,152.599161566285,155.666012213224,154.057055739896,161.444671857319,156.220488833348,160.735593688522,157.396967947354,177.882100115503,159.44546435889,149.923822175608,163.692417267876,148.274557014969,167.057125109668,235.821185573421,173.109390249602,146.542058860939,157.812873956796,138.310819787936,112.455900275904 | |phase1_expression=179.847155298684,15.3549179361319,8.64498554840118,13.9133537201142,12.0214975187123,53.5534877398928,56.5342590241172,83.6719135901414,40.6879407018317,51.0260667381946,46.9137232937884,52.4900806189314,84.7443613159468,91.4417409302713,26.3156711834374,30.3712901084739,28.682037003254,50.6316775399971,62.5241817242169,64.9316167250986,99.2455196062984,91.4469660560154,72.874741169763,27.3587042976725,22.0232909824483,11.4846392823004,18.9535278309993,26.7184328530502,17.29213117053,20.1624103807945,18.4036323843903,81.2839262028328,79.3433575984096,63.3926724061755,46.7939623997065,33.413163717057,42.8755648150975,89.9843006084352,51.5681327385708,79.5756090840173,100.587584453303,102.456822743767,90.7904360168257,231.901938711013,230.024256937079,274.035300977391,319.998059838348,255.525483277883,275.047100783559,268.118830823437,199.060691551266,263.067192787898,56.3749556353994,75.4376627691798,66.5465722302079,138.662836023375,165.043261404724,161.921036975117,241.3635378055,287.242101744714,255.43405561299,293.778209303938,233.88453137723,97.6391193250318,98.8866362566974,95.2043354027774,198.634873273702,176.356202142594,176.583409761337,179.69290391948,179.196867071377,203.097849911104,183.320888989839,161.442873365309,186.515286601488,193.035945188104,172.88193316904,173.016343105429,177.569152444217,266.937846365912,269.339622765494,246.392024273347,135.124571516668,215.538079642133,197.109739632085,215.962753152198,210.710087582672,232.999307281626,93.0674916064832,163.763570751404,134.78698724628,64.531790773604,27.8788246820178,35.0807074564581,48.0834548911275,38.9783391774682,52.2453242890117,126.800159998075,80.2738754222865,87.274874904054,171.969815547327,159.124831993754,160.527301015187,156.434674693733,66.679240631454,73.9810807187288,65.2126534069071,45.3310002484668,76.3866756759157,154.379824627418,189.966432808919,193.33557872821,164.659465040826,155.244319769201,183.673560545971,119.88592812851,171.553307607655,82.2770340874297,78.7303391235388,143.648962753299,77.0736899426773,81.9439177798525,82.0123749359738,119.454565180711,128.809724690275,34.7421595083684,49.9629069189688,37.7938720525847,49.4303183314222,223.188052713186,197.182759814828,143.371615760778,176.257860674968,179.000820131231,177.658778098424,199.070029784139,193.2911125879,101.018460135396,148.853704717434,77.8634866779954,229.402340943247,178.174130935942,186.364304348536,183.709172941737,193.69991308383,186.149235573887,189.277483610652,160.39608985819,278.298278876299,260.020860230752,258.824103645169,187.850742690432,216.876854395966,193.976456752847,172.033866037041,197.441992683945,40.7283648641676,43.2344483952721,43.7611789069213,270.713384703901,255.164353259433,232.099997223248,281.962980081985,255.990265503372,223.378779460924,233.231546584659,223.471743365883,233.297154049605,222.978596632766,187.479243978327,166.596403616734,165.0597858032,149.952728743788,159.705638324842,189.260953707715,168.660659689647,16.5209391491899,30.6762657329711,224.165951312531,222.947204986021,185.569144303814,152.271061090624,127.644997166956,100.248904961319,53.1472548929853,73.7851317163569,94.7533737177016,88.5356300583121,99.2367203436321,60.2209003798328,54.8990646681723,56.5561216042403,156.665686187245,194.565216974368,206.255156281737,193.061458797358,184.448815296412,187.893861486163,194.768534342712,134.177624513458,124.342992450369,127.222476003376,44.7643466901595,95.9359357867541,106.534975351356,82.5243952452413,97.9814386306469,130.959197745562,131.641565370994,112.776885880718,86.4180758710939,74.9552658003462,86.2609239164127,108.293015771534,100.788168416003,62.6395617308837,45.2081482075219,48.2443521363367,175.330777468108,209.009027182845,226.358352277974,202.336142244024,223.894496867231,245.899185924586,246.137124676138,202.353592828537,297.772787216595,274.173285785183,274.900021165508,228.097734084307,186.499780415167,194.552983792133,96.5064217211342,114.764099285748,58.0281842162463,84.7125811155529,161.353342937731,170.77742736484,84.0986269782345,94.4241267744355,218.016179616633,208.884728198702,239.33539488114,218.417481328633,243.741749446139,179.753597050909,211.311186274295,213.054520417346,239.93968121354,177.690687981259,172.741083698463,215.103249230044,199.862299126838,193.180014000839,55.7529581027844,187.912212383956,162.347750090071,115.049098651098,138.791889653963,125.433540361122,126.113007066092,146.504092979435,134.043014272655,97.3393214442313,66.4137234022492,76.3203020036583,216.519589259409,214.45276299129,257.423780727681,256.561430932816,254.30589504302,269.515283396729,260.810197654362,270.669339762879,84.247143194872,103.16221851068,120.849562134119,59.8537098177573,131.270578903771,113.870802264358,94.4235241064809,95.2017218521355,68.7894774446448,155.942678990839,49.5525554313773,160.362596407424,110.375938312348,53.1199048753229,45.7925662865434,56.9657651284241,72.4108111773824,71.6551435897129,70.6201866140606,45.8241896647254,237.884667173014,208.605773272147,160.063915097909,154.098074162663,131.672625938945,136.482718541439,136.378201946804,81.6678538990172,73.1028449365712,86.9875038321696,24.8024893021044,211.864945744318,183.658924407378,227.896792739224,198.64780850875,216.432796753687,251.027133463268,189.056766793416,154.248095650221,52.9069224608953,46.9488910200321,108.707825496093,165.018325246194,149.239020760494,115.889374096193,110.459471226836,106.493206162758,93.5120597265358,95.4074345547769,97.129724850118,93.4295449590298,95.1799187691774,92.9748182257238,99.579256097741,111.266810876854,60.5370124252614,68.3716736392119,52.4826061165433,73.7013465838304,141.99435161366,138.321984407521,156.777790372779,86.1760883897845,109.844290783745,159.82477146063,152.367653283876,155.254684142076,154.324157744631,133.591091355275,135.215507632756,148.504950050997,124.738973293109,137.302149922214,136.68872230248,204.772436783581,281.312535747727,219.221949788308,174.793729572103,176.703896095389,133.28654362626,160.684384200568,157.822853844993,180.035676581008,154.39799638768,177.182030623278,163.161785298956,145.050695070848,157.245774306359,147.092235995326,141.459226311073,161.774519019018,140.05209405665,150.82343969401,157.944441304208,155.662640582979,139.850935253558,152.599161566285,155.666012213224,154.057055739896,161.444671857319,156.220488833348,160.735593688522,157.396967947354,177.882100115503,159.44546435889,149.923822175608,163.692417267876,148.274557014969,167.057125109668,235.821185573421,173.109390249602,146.542058860939,157.812873956796,138.310819787936,112.455900275904 | ||
|short_description=p1@Nisch | |||
}} | }} |
Latest revision as of 21:26, 25 September 2015
Short description: | p1@Nisch |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Nisch_5end |
Coexpression cluster: | MCL_coexpression_mm9:1662 |
Association with transcript: | 0bp_to_ENSMUST00000164617, ENSMUST00000164989, ENSMUST00000165981, ENSMUST00000171735_5end |
EntrezGene: | Nisch |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.32e-13 | 44 |
neurectodermal cell | 4.32e-13 | 44 |
neural cell | 4.64e-13 | 43 |
electrically responsive cell | 2.80e-11 | 39 |
electrically active cell | 2.80e-11 | 39 |
neuron | 3.86e-10 | 33 |
neuronal stem cell | 3.86e-10 | 33 |
neuroblast | 3.86e-10 | 33 |
electrically signaling cell | 3.86e-10 | 33 |
CNS neuron (sensu Vertebrata) | 7.79e-07 | 23 |
neuroblast (sensu Vertebrata) | 7.79e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.07e-16 | 92 |
central nervous system | 2.50e-16 | 73 |
nervous system | 6.79e-16 | 75 |
ectoderm-derived structure | 2.22e-13 | 95 |
ectoderm | 2.22e-13 | 95 |
presumptive ectoderm | 2.22e-13 | 95 |
neurectoderm | 1.03e-11 | 64 |
neural plate | 1.03e-11 | 64 |
presumptive neural plate | 1.03e-11 | 64 |
tube | 2.67e-11 | 114 |
anatomical conduit | 3.45e-10 | 122 |
regional part of nervous system | 6.38e-10 | 54 |
neural tube | 1.43e-09 | 52 |
neural rod | 1.43e-09 | 52 |
future spinal cord | 1.43e-09 | 52 |
neural keel | 1.43e-09 | 52 |
ecto-epithelium | 2.63e-09 | 73 |
pre-chordal neural plate | 1.50e-08 | 49 |
brain | 2.80e-08 | 47 |
future brain | 2.80e-08 | 47 |
regional part of brain | 3.70e-08 | 46 |
anterior neural tube | 1.32e-07 | 40 |
embryo | 2.65e-07 | 320 |
regional part of forebrain | 2.95e-07 | 39 |
forebrain | 2.95e-07 | 39 |
future forebrain | 2.95e-07 | 39 |