Personal tools

UBERON:0005291: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=embryonic tissue
|name=embryonic tissue
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0002050
|part_of=UBERON:0000922;;UBERON:0002050

Latest revision as of 17:52, 12 September 2014

Name:embryonic tissue
Namespace:FANTOM
Definition:"A portion of tissue that is part of an embryo." [OBOL:automatic]
Synonyms: "developing tissue" RELATED []
"portion of embryonic tissue" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue),UBERON:0002050(embryonic structure)
part_of:UBERON:0000922(embryo),UBERON:0002050(embryonic structure)



Children

is a:UBERON:0000076 (external ectoderm),UBERON:0001049 (neural tube),UBERON:0003050 (olfactory placode),UBERON:0003051 (ear vesicle),UBERON:0003056 (pre-chordal neural plate),UBERON:0003071 (eye primordium),UBERON:0003075 (neural plate),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003099 (cranial neural crest),UBERON:0003220 (metanephric mesenchyme),UBERON:0003249 (epithelium of otic placode),UBERON:0003820 (prostate bud),UBERON:0003894 (liver primordium),UBERON:0003922 (pancreatic epithelial bud),UBERON:0004061 (neural tube mantle layer),UBERON:0004117 (pharyngeal pouch),UBERON:0004140 (primary heart field),UBERON:0004141 (heart tube),UBERON:0005062 (neural fold),UBERON:0005253 (head mesenchyme),UBERON:0005256 (trunk mesenchyme),UBERON:0005295 (sex cord),UBERON:0005333 (mammary bud),UBERON:0005356 (Rathke's pouch),UBERON:0005428 (vagal neural crest),UBERON:0005641 (otocyst epithelium),UBERON:0005866 (pre-cartilage condensation),UBERON:0005891 (coelomic epithelium),UBERON:0006258 (lateral plate mesenchyme),UBERON:0006267 (notochordal plate),UBERON:0006293 (spleen primordium),UBERON:0007005 (cardiac mesoderm),UBERON:0007383 (enveloping layer of ectoderm),UBERON:0007690 (early pharyngeal endoderm),UBERON:0008835 (hepatic diverticulum),UBERON:0009526 (maxillary process mesenchyme),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0009846 (embryonic cloacal epithelium),UBERON:0009881 (anterior lateral plate mesoderm),UBERON:0010046 (entire pharyngeal arch associated mesenchyme),UBERON:0010286 (midbrain neural tube),UBERON:0010316 (germ layer / neural crest),UBERON:0010359 (pharyngeal arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005291 (embryonic tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.5e-31FFCP PHASE1:Hg19::chr20:23618584..23618603,-#_5b066d59181ecc997ac6454fbc91a3adp1@CST3
7.5e-31FFCP PHASE2:Hg19::chr20:23618584..23618603,-#_5b066d59181ecc997ac6454fbc91a3adp1@CST3
6.91e-29FFCP PHASE2:Hg19::chr13:77460532..77460548,-#_c5984a643f17a63136320b662a5be1a8p1@KCTD12
6.91e-29FFCP PHASE1:Hg19::chr13:77460532..77460548,-#_c5984a643f17a63136320b662a5be1a8p1@KCTD12
1.31e-28FFCP PHASE2:Hg19::chr13:45010939..45011033,-#_f0580261f3fa1fdf5d980d20b44d80c1p1@TSC22D1
1.31e-28FFCP PHASE1:Hg19::chr13:45010939..45011033,-#_f0580261f3fa1fdf5d980d20b44d80c1p1@TSC22D1
6.82e-28FFCP PHASE2:Hg19::chr2:230135937..230136016,-#_7da0c6d4bf4cc6298a6c2fce9cc5386ap1@PID1
6.82e-28FFCP PHASE1:Hg19::chr2:230135937..230136016,-#_7da0c6d4bf4cc6298a6c2fce9cc5386ap1@PID1
1.74e-26FFCP PHASE1:Hg19::chr7:111846435..111846471,-#_b03d0b59cd08a0dd99a7cabb0f5151e7p1@DOCK4
1.74e-26FFCP PHASE2:Hg19::chr7:111846435..111846471,-#_b03d0b59cd08a0dd99a7cabb0f5151e7p1@DOCK4
4.12e-26FFCP PHASE2:Hg19::chr11:1330834..1330875,-#_ea1ba289ae1f3c88f486791fb7b4616ep1@TOLLIP
4.12e-26FFCP PHASE1:Hg19::chr11:1330834..1330875,-#_ea1ba289ae1f3c88f486791fb7b4616ep1@TOLLIP
6.68e-25FFCP PHASE1:Hg19::chr12:112204714..112204781,+#_7d3958ac7fa6d7acec96a725b7b60aafp1@ALDH2
6.68e-25FFCP PHASE2:Hg19::chr12:112204714..112204781,+#_7d3958ac7fa6d7acec96a725b7b60aafp1@ALDH2
6.83e-25FFCP PHASE2:Hg19::chr13:77460594..77460613,-#_e5fe84ecd06ffe9de807f49e9bfa666fp3@KCTD12
6.83e-25FFCP PHASE1:Hg19::chr13:77460594..77460613,-#_e5fe84ecd06ffe9de807f49e9bfa666fp3@KCTD12
1.27e-24FFCP PHASE1:Hg19::chr4:85887789..85887862,-#_d0f2f87493354591db5de5322da87811p1@WDFY3
1.27e-24FFCP PHASE2:Hg19::chr4:85887789..85887862,-#_d0f2f87493354591db5de5322da87811p1@WDFY3
6.07e-24FFCP PHASE2:Hg19::chr16:4852616..4852679,-#_cd8544d09bdb2bc46e6db17fc30345d1p1@ROGDI
6.07e-24FFCP PHASE1:Hg19::chr16:4852616..4852679,-#_cd8544d09bdb2bc46e6db17fc30345d1p1@ROGDI
1.62e-23FFCP PHASE2:Hg19::chr1:183774240..183774270,+#_114368a575c9363c9e5a5e9844aca3eep1@RGL1
1.62e-23FFCP PHASE1:Hg19::chr1:183774240..183774270,+#_114368a575c9363c9e5a5e9844aca3eep1@RGL1
2.33e-23FFCP PHASE2:Hg19::chr8:30670289..30670354,-#_c9dbc4c9c781aeefe38eea3d9e37d31bp1@PPP2CB
2.33e-23FFCP PHASE1:Hg19::chr8:30670289..30670354,-#_c9dbc4c9c781aeefe38eea3d9e37d31bp1@PPP2CB
2.57e-23FFCP PHASE1:Hg19::chr13:77460635..77460654,-#_0afbf4d7e5b6472c62142a8981bad733p2@KCTD12
2.57e-23FFCP PHASE2:Hg19::chr13:77460635..77460654,-#_0afbf4d7e5b6472c62142a8981bad733p2@KCTD12
4.06e-23FFCP PHASE2:Hg19::chr4:159094160..159094185,-#_08c37248ee0d7ed3fbc3016ab3187617p2@FAM198B
4.06e-23FFCP PHASE1:Hg19::chr4:159094160..159094185,-#_08c37248ee0d7ed3fbc3016ab3187617p2@FAM198B
6.15e-23FFCP PHASE2:Hg19::chr15:90456156..90456198,-#_8b0ac267ae99819e0228c94d15e2a3adp1@C15orf38
6.15e-23FFCP PHASE1:Hg19::chr15:90456156..90456198,-#_8b0ac267ae99819e0228c94d15e2a3adp1@C15orf38
7.82e-23FFCP PHASE1:Hg19::chr19:40871734..40871809,+#_1bc3bb9dced17b46b1d96b4717764f9ep1@PLD3
7.82e-23FFCP PHASE2:Hg19::chr19:40871734..40871809,+#_1bc3bb9dced17b46b1d96b4717764f9ep1@PLD3
1.53e-22FFCP PHASE2:Hg19::chr16:2563989..2564006,+#_841d3c6daebb83691b6372151ce2d3bbp2@ATP6V0C
1.53e-22FFCP PHASE1:Hg19::chr16:2563989..2564006,+#_841d3c6daebb83691b6372151ce2d3bbp2@ATP6V0C
2.37e-22FFCP PHASE2:Hg19::chr20:35974484..35974529,+#_eb60c8753e0ec704f41c9c1b26f2bb17p2@SRC
2.37e-22FFCP PHASE1:Hg19::chr20:35974484..35974529,+#_eb60c8753e0ec704f41c9c1b26f2bb17p2@SRC
5.65e-22FFCP PHASE2:Hg19::chr11:65082349..65082378,+#_aa1761c1ea12b9d667e092dae1364aadp1@CDC42EP2
5.65e-22FFCP PHASE1:Hg19::chr11:65082349..65082378,+#_aa1761c1ea12b9d667e092dae1364aadp1@CDC42EP2
5.66e-22FFCP PHASE2:Hg19::chr17:1466030..1466129,-#_20d5d49010ade8e69d41ba0677f2b809p1@PITPNA
5.66e-22FFCP PHASE1:Hg19::chr17:1466030..1466129,-#_20d5d49010ade8e69d41ba0677f2b809p1@PITPNA
5.93e-22FFCP PHASE1:Hg19::chr19:6720653..6720670,-#_2d709e2f4b7a96e64811804a8b6180b5p1@C3
5.93e-22FFCP PHASE2:Hg19::chr19:6720653..6720670,-#_2d709e2f4b7a96e64811804a8b6180b5p1@C3
6.18e-22FFCP PHASE1:Hg19::chr7:2671611..2671658,+#_cf2488cc5f14eebd5f3b4b91e51eaeeap2@TTYH3
6.18e-22FFCP PHASE2:Hg19::chr7:2671611..2671658,+#_cf2488cc5f14eebd5f3b4b91e51eaeeap2@TTYH3
1.1e-21FFCP PHASE1:Hg19::chr2:127864839..127864888,-#_4a708305b54508f61eaa788f5e3fe166p2@BIN1
1.1e-21FFCP PHASE2:Hg19::chr2:127864839..127864888,-#_4a708305b54508f61eaa788f5e3fe166p2@BIN1
2.41e-21FFCP PHASE2:Hg19::chr17:73851380..73851427,-#_9c18c2ee7c863f8ad21baeca376b39adp1@WBP2
2.41e-21FFCP PHASE1:Hg19::chr17:73851380..73851427,-#_9c18c2ee7c863f8ad21baeca376b39adp1@WBP2
3.59e-21FFCP PHASE2:Hg19::chr22:31003154..31003188,+#_9476aec0a55613877929d6b2c2c29b72p1@TCN2
3.59e-21FFCP PHASE1:Hg19::chr22:31003154..31003188,+#_9476aec0a55613877929d6b2c2c29b72p1@TCN2
3.69e-21FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_f06cb7f5f66196042eaed01a2a4e5fddp1@NFIB
3.69e-21FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_f06cb7f5f66196042eaed01a2a4e5fddp1@NFIB
4.02e-21FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_3b5134c3b0dbb432e98180c3a8685c30p2@NFIB
4.02e-21FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_3b5134c3b0dbb432e98180c3a8685c30p2@NFIB
4.54e-21FFCP PHASE1:Hg19::chr19:44100155..44100211,-#_2ce4ae9c83a055e9ab3374c6f4f67425p1@IRGQ
4.54e-21FFCP PHASE2:Hg19::chr19:44100155..44100211,-#_2ce4ae9c83a055e9ab3374c6f4f67425p1@IRGQ
5.7e-21FFCP PHASE1:Hg19::chr4:24914581..24914691,-#_384b17ca380bddadb501c1a0bb4578eap1@CCDC149
5.7e-21FFCP PHASE2:Hg19::chr4:24914581..24914691,-#_384b17ca380bddadb501c1a0bb4578eap1@CCDC149
6.27e-21FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_f476d2b846bb350aaef5607e87b48d54p1@BIN1
6.27e-21FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_f476d2b846bb350aaef5607e87b48d54p1@BIN1
1.02e-20FFCP PHASE2:Hg19::chr19:14228541..14228582,-#_908b1a5091a703b4a0c7637f3a97b95bp1@PRKACA
1.02e-20FFCP PHASE1:Hg19::chr19:14228541..14228582,-#_908b1a5091a703b4a0c7637f3a97b95bp1@PRKACA
1.29e-20FFCP PHASE2:Hg19::chr16:89787269..89787359,-#_a09153c7ec6601a6365c409c4b471ef4p1@C16orf7
1.29e-20FFCP PHASE1:Hg19::chr16:89787269..89787359,-#_a09153c7ec6601a6365c409c4b471ef4p1@C16orf7
1.45e-20FFCP PHASE1:Hg19::chr1:10270620..10270637,+#_43ee00add889c86ba980761ed754d6b5p1@KIF1B
1.45e-20FFCP PHASE2:Hg19::chr1:10270620..10270637,+#_43ee00add889c86ba980761ed754d6b5p1@KIF1B
2.63e-20FFCP PHASE1:Hg19::chr18:59561635..59561651,-#_18bd163a0ab2a45062b5d7a077f3790fp@chr18:59561635..59561651, -
2.63e-20FFCP PHASE2:Hg19::chr18:59561635..59561651,-#_18bd163a0ab2a45062b5d7a077f3790fp@chr18:59561635..59561651, -
3.08e-20FFCP PHASE1:Hg19::chr12:52345448..52345532,+#_18d126fc8c1704ee460b43166fd69144p1@ACVR1B
3.08e-20FFCP PHASE2:Hg19::chr12:52345448..52345532,+#_18d126fc8c1704ee460b43166fd69144p1@ACVR1B
3.96e-20FFCP PHASE1:Hg19::chr20:23614485..23614564,-#_5031c7ca39c78217261223280d6efeb2p@chr20:23614485..23614564, -
3.96e-20FFCP PHASE2:Hg19::chr20:23614485..23614564,-#_5031c7ca39c78217261223280d6efeb2p@chr20:23614485..23614564, -
5.35e-20FFCP PHASE2:Hg19::chr1:68698197..68698214,-#_1903d1ce2de7463197699db572959f3fp1@WLS
5.35e-20FFCP PHASE1:Hg19::chr1:68698197..68698214,-#_1903d1ce2de7463197699db572959f3fp1@WLS
6.51e-20FFCP PHASE1:Hg19::chr10:30025922..30025958,-#_6e0e91a8694f860af001e4d57f52c9e8p3@SVIL
6.51e-20FFCP PHASE2:Hg19::chr10:30025922..30025958,-#_6e0e91a8694f860af001e4d57f52c9e8p3@SVIL
6.99e-20FFCP PHASE1:Hg19::chr15:64995399..64995422,-#_5830a6a66da8d82fa7bb9c684b8636c7p1@OAZ2
6.99e-20FFCP PHASE2:Hg19::chr15:64995399..64995422,-#_5830a6a66da8d82fa7bb9c684b8636c7p1@OAZ2
8.06e-20FFCP PHASE1:Hg19::chr9:34989685..34989748,+#_d6fb6cc1dd019871dc43d964f4959ff0p1@DNAJB5
8.06e-20FFCP PHASE2:Hg19::chr9:34989685..34989748,+#_d6fb6cc1dd019871dc43d964f4959ff0p1@DNAJB5
9.9e-20FFCP PHASE1:Hg19::chrX:100333858..100333876,+#_e7d7beb64be2668ecc3a2711295f57fep1@TMEM35
9.9e-20FFCP PHASE2:Hg19::chrX:100333858..100333876,+#_e7d7beb64be2668ecc3a2711295f57fep1@TMEM35
1.09e-19FFCP PHASE2:Hg19::chr16:2563941..2563983,+#_8a621f3f882e26878e6ff89f7be600b0p1@ATP6V0C
1.09e-19FFCP PHASE1:Hg19::chr16:2563941..2563983,+#_8a621f3f882e26878e6ff89f7be600b0p1@ATP6V0C
1.11e-19FFCP PHASE1:Hg19::chr17:68165657..68165688,+#_f1660727e4d7c7d25ae87351dfb8aecep1@KCNJ2
1.11e-19FFCP PHASE2:Hg19::chr17:68165657..68165688,+#_f1660727e4d7c7d25ae87351dfb8aecep1@KCNJ2
1.12e-19FFCP PHASE2:Hg19::chr17:7492684..7492778,-#_cdd6818d49840fb66a1543895e933e04p2@SOX15
1.12e-19FFCP PHASE1:Hg19::chr17:7492684..7492778,-#_cdd6818d49840fb66a1543895e933e04p2@SOX15
1.16e-19FFCP PHASE2:Hg19::chr19:11466086..11466159,+#_ed86fcdf2b625086e5177729c8dff41ep1@LPPR2
1.16e-19FFCP PHASE1:Hg19::chr19:11466086..11466159,+#_ed86fcdf2b625086e5177729c8dff41ep1@LPPR2
1.32e-19FFCP PHASE2:Hg19::chr18:59561658..59561685,-#_14d5cac66e1f2ea5a3af78569ec08358p@chr18:59561658..59561685, -
1.32e-19FFCP PHASE1:Hg19::chr18:59561658..59561685,-#_14d5cac66e1f2ea5a3af78569ec08358p@chr18:59561658..59561685, -
1.38e-19FFCP PHASE2:Hg19::chr12:110719036..110719113,+#_dcf2a0ec054e98ca7b0aa5e00160691cp1@ATP2A2
1.38e-19FFCP PHASE1:Hg19::chr12:110719036..110719113,+#_dcf2a0ec054e98ca7b0aa5e00160691cp1@ATP2A2
1.45e-19FFCP PHASE1:Hg19::chr6:123110389..123110441,+#_0c7b43206de49d80eb27f4e6c79fc3ecp1@SMPDL3A
1.45e-19FFCP PHASE2:Hg19::chr6:123110389..123110441,+#_0c7b43206de49d80eb27f4e6c79fc3ecp1@SMPDL3A
1.86e-19FFCP PHASE2:Hg19::chr10:118764649..118764683,-#_22d7fb808772d0fc482b2c7c9970606ap2@KIAA1598
1.86e-19FFCP PHASE1:Hg19::chr10:118764649..118764683,-#_22d7fb808772d0fc482b2c7c9970606ap2@KIAA1598
3.3e-19FFCP PHASE2:Hg19::chr2:153191678..153191697,+#_ba785d316e64bfd446e7213bbebd01fap1@FMNL2
3.3e-19FFCP PHASE1:Hg19::chr2:153191678..153191697,+#_ba785d316e64bfd446e7213bbebd01fap1@FMNL2

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005291&oldid=3277755"