FFCP PHASE1:Hg19::chr12:133404969..133404985,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:133404969..133404985,- to FFCP PHASE1:Hg19::chr12:133404969..133404985,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2802 | |EntrezGene=2802 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4426 | |HGNC=4426 | ||
|TSSclassifier=strong | |||
|UniProt=Q08378 | |UniProt=Q08378 | ||
|association_with_transcript=302bp_to_ENST00000204726,NM_005895,uc001ukz.1,uc001ula.1_5end | |||
|cluster_id=chr12:133404969..133404985,- | |||
|coexpression_cluster_id=C54 | |||
|description=CAGE_peak_11_at_GOLGA3_5end | |||
|id=chr12:133404969..133404985,- | |||
|ontology_enrichment_celltype=CL:0000557!2.19e-16!71;CL:0000839!1.55e-15!70;CL:0002009!1.60e-15!65;CL:0002194!4.34e-15!63;CL:0000576!4.34e-15!63;CL:0000040!4.34e-15!63;CL:0000559!4.34e-15!63;CL:0000766!2.25e-14!76;CL:0000763!7.39e-14!112;CL:0000049!7.39e-14!112;CL:0002057!1.10e-12!42;CL:0000860!2.81e-11!45;CL:0000738!2.14e-09!140;CL:0002032!1.55e-08!165;CL:0000837!1.55e-08!165;CL:0000037!1.66e-08!172;CL:0000566!1.66e-08!172;CL:0002031!1.85e-08!124;CL:0002087!6.77e-08!119;CL:0000988!1.18e-07!182;CL:0000990!2.78e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000840;2.49e-36;5!CL:0000990;2.29e-24;8!CL:0000235;1.80e-20;6!CL:0000451;5.27e-20;10!CL:0001014;4.85e-08;2!CL:0001016;4.85e-08;2!CL:0000473;3.38e-07;39!CL:0000234;3.38e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000840,2.50e-36,5;CL:0001029,2.50e-36,5;CL:0000990,2.30e-24,8;CL:0000235,1.86e-20,6;CL:0000451,5.28e-20,10;CL:0002009,1.95e-16,61;CL:0000557,6.62e-15,67;CL:0000763,1.78e-13,108;CL:0000049,1.78e-13,108;CL:0002194,1.98e-13,59;CL:0000576,1.98e-13,59;CL:0000040,1.98e-13,59;CL:0000559,1.98e-13,59;CL:0000839,6.00e-12,66;CL:0000766,6.66e-11,72;CL:0002032,1.24e-08,161;CL:0000837,1.24e-08,161;CL:0000037,3.21e-08,168;CL:0001014,4.69e-08,2;CL:0001016,4.69e-08,2;CL:0002031,6.04e-08,120;CL:0000988,9.82e-08,177;CL:0000738,6.77e-07,136;CL:0000473,8.34e-07,48;CL:0000234,8.34e-07,48 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.24e-13!80;UBERON:0001474!2.49e-11!86;UBERON:0002193!3.39e-11!112;UBERON:0002405!4.68e-11!115;UBERON:0002390!1.42e-10!102;UBERON:0003061!1.42e-10!102;UBERON:0004765!8.54e-10!101;UBERON:0001434!8.54e-10!101;UBERON:0002204!5.43e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.71e-13,76;UBERON:0001474,4.85e-12,82;UBERON:0004765,6.76e-11,90;UBERON:0002405,1.62e-10,93;UBERON:0002390,6.17e-10,98;UBERON:0003061,6.17e-10,98;UBERON:0001434,1.02e-09,100;UBERON:0003081,1.59e-09,203;UBERON:0002193,6.22e-09,108;UBERON:0002204,2.68e-08,167 | |||
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| ||
|short_description=p11@GOLGA3 | |||
}} | }} |
Latest revision as of 11:35, 17 September 2015
Short description: | p11@GOLGA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_GOLGA3_5end |
Coexpression cluster: | C54_Dendritic_Macrophage_Monocytederived_CD14_leiomyoma_adipose_immature |
Association with transcript: | 302bp_to_ENST00000204726, NM_005895, uc001ukz.1, uc001ula.1_5end |
EntrezGene: | GOLGA3 |
HGNC: | 4426 |
UniProt: | Q08378 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
immature conventional dendritic cell | 2.50e-36 | 5 |
common dendritic progenitor | 2.50e-36 | 5 |
conventional dendritic cell | 2.30e-24 | 8 |
macrophage | 1.86e-20 | 6 |
dendritic cell | 5.28e-20 | 10 |
macrophage dendritic cell progenitor | 1.95e-16 | 61 |
granulocyte monocyte progenitor cell | 6.62e-15 | 67 |
myeloid cell | 1.78e-13 | 108 |
common myeloid progenitor | 1.78e-13 | 108 |
monopoietic cell | 1.98e-13 | 59 |
monocyte | 1.98e-13 | 59 |
monoblast | 1.98e-13 | 59 |
promonocyte | 1.98e-13 | 59 |
myeloid lineage restricted progenitor cell | 6.00e-12 | 66 |
myeloid leukocyte | 6.66e-11 | 72 |
hematopoietic oligopotent progenitor cell | 1.24e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.24e-08 | 161 |
hematopoietic stem cell | 3.21e-08 | 168 |
CD1a-positive Langerhans cell | 4.69e-08 | 2 |
immature CD1a-positive Langerhans cell | 4.69e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 6.04e-08 | 120 |
hematopoietic cell | 9.82e-08 | 177 |
leukocyte | 6.77e-07 | 136 |
defensive cell | 8.34e-07 | 48 |
phagocyte | 8.34e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.71e-13 | 76 |
bone element | 4.85e-12 | 82 |
skeletal element | 6.76e-11 | 90 |
immune system | 1.62e-10 | 93 |
hematopoietic system | 6.17e-10 | 98 |
blood island | 6.17e-10 | 98 |
skeletal system | 1.02e-09 | 100 |
lateral plate mesoderm | 1.59e-09 | 203 |
hemolymphoid system | 6.22e-09 | 108 |
musculoskeletal system | 2.68e-08 | 167 |