FFCP PHASE1:Hg19::chr14:57735725..57735836,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:57735725..57735836,+ to FFCP PHASE1:Hg19::chr14:57735725..57735836,+: NSchange) |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55745 | |EntrezGene=55745 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20192 | |HGNC=20192 | ||
|TSSclassifier=strong | |||
|UniProt=E7EQ45,G3V3L4 | |UniProt=E7EQ45,G3V3L4 | ||
|association_with_transcript=0bp_to_ENST00000431972,ENST00000554213,ENST00000555448_5end | |||
|cluster_id=chr14:57735725..57735836,+ | |||
|description=CAGE_peak_1_at_MUDENG_5end | |||
|id=chr14:57735725..57735836,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.82e-15!172;CL:0000566!1.82e-15!172;CL:0002032!1.25e-14!165;CL:0000837!1.25e-14!165;CL:0000738!3.12e-14!140;CL:0002031!4.14e-14!124;CL:0000542!9.03e-14!53;CL:0000051!9.03e-14!53;CL:0000838!2.63e-13!52;CL:0000988!2.90e-13!182;CL:0002087!1.68e-12!119;CL:0000945!2.75e-09!24;CL:0000826!2.75e-09!24 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.46e-09;24!CL:0000542;2.64e-08;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,3.42e-15,168;CL:0002032,2.31e-14,161;CL:0000837,2.31e-14,161;CL:0000738,5.47e-14,136;CL:0002031,6.94e-14,120;CL:0000542,9.03e-14,53;CL:0000051,9.03e-14,53;CL:0000988,1.75e-13,177;CL:0000838,2.63e-13,52;CL:0002087,2.82e-12,115;CL:0000945,2.75e-09,24;CL:0000826,2.75e-09,24 | |||
|ontology_enrichment_development_v019=CL:0000051;2.64e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.92e-24!115;UBERON:0001049!4.55e-20!57;UBERON:0005068!4.55e-20!57;UBERON:0006241!4.55e-20!57;UBERON:0007135!4.55e-20!57;UBERON:0002780!3.04e-18!41;UBERON:0001890!3.04e-18!41;UBERON:0006240!3.04e-18!41;UBERON:0003080!9.80e-18!42;UBERON:0001017!9.76e-17!82;UBERON:0005743!1.68e-16!86;UBERON:0002616!3.03e-16!59;UBERON:0002020!5.84e-15!34;UBERON:0003528!5.84e-15!34;UBERON:0000073!6.30e-15!94;UBERON:0001016!6.30e-15!94;UBERON:0001893!1.22e-14!34;UBERON:0001869!4.01e-14!32;UBERON:0002791!4.47e-14!33;UBERON:0000955!5.49e-14!69;UBERON:0006238!5.49e-14!69;UBERON:0000153!4.71e-12!129;UBERON:0007811!4.71e-12!129;UBERON:0003075!8.88e-12!86;UBERON:0007284!8.88e-12!86;UBERON:0003056!4.99e-11!61;UBERON:0002619!5.41e-11!22;UBERON:0002346!7.10e-11!90;UBERON:0000956!7.95e-11!25;UBERON:0000203!7.95e-11!25;UBERON:0000033!1.25e-10!123;UBERON:0001950!6.54e-10!20;UBERON:0004121!2.70e-09!169;UBERON:0000924!8.04e-09!173;UBERON:0006601!8.04e-09!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;5.53e-13;41!UBERON:0001890;5.53e-13;41!UBERON:0003528;6.54e-13;34!UBERON:0002020;6.54e-13;34!UBERON:0001869;1.05e-12;32!UBERON:0001893;1.19e-12;34!UBERON:0002791;1.41e-12;32!UBERON:0000073;1.69e-11;53!UBERON:0002616;1.69e-11;53!UBERON:0002619;5.88e-11;22!UBERON:0000956;8.70e-11;25!UBERON:0000203;8.70e-11;25!UBERON:0001950;7.19e-10;20!UBERON:0007023;4.47e-07;114!UBERON:0001017;4.69e-07;75!UBERON:0000955;9.71e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.09e-23,114;UBERON:0001049,1.67e-20,56;UBERON:0005068,1.67e-20,56;UBERON:0006241,1.67e-20,56;UBERON:0007135,1.67e-20,56;UBERON:0000073,3.07e-19,53;UBERON:0002616,3.07e-19,53;UBERON:0002780,3.04e-18,41;UBERON:0001890,3.04e-18,41;UBERON:0003080,3.04e-18,41;UBERON:0006240,3.04e-18,41;UBERON:0001017,5.29e-17,81;UBERON:0001016,2.69e-15,89;UBERON:0003528,5.84e-15,34;UBERON:0002020,5.84e-15,34;UBERON:0001893,1.22e-14,34;UBERON:0000955,3.00e-14,68;UBERON:0006238,3.00e-14,68;UBERON:0001869,4.01e-14,32;UBERON:0002791,6.25e-14,32;UBERON:0003075,4.53e-12,82;UBERON:0007284,4.53e-12,82;UBERON:0003056,3.63e-11,61;UBERON:0002346,4.06e-11,86;UBERON:0002619,5.41e-11,22;UBERON:0000956,7.95e-11,25;UBERON:0000203,7.95e-11,25;UBERON:0010371,1.15e-10,104;UBERON:0001950,6.54e-10,20;UBERON:0004121,7.52e-09,171;UBERON:0000924,7.52e-09,171;UBERON:0006601,7.52e-09,171;UBERON:0011216,4.85e-08,223 | |||
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| ||
|short_description=p1@MUDENG | |||
}} | }} |
Latest revision as of 18:11, 24 September 2015
Short description: | p1@MUDENG |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MUDENG_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000431972, ENST00000554213, ENST00000555448_5end |
EntrezGene: | MUDENG |
HGNC: | 20192 |
UniProt: | E7EQ45G3V3L4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 3.42e-15 | 168 |
hematopoietic oligopotent progenitor cell | 2.31e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.31e-14 | 161 |
leukocyte | 5.47e-14 | 136 |
hematopoietic lineage restricted progenitor cell | 6.94e-14 | 120 |
lymphocyte | 9.03e-14 | 53 |
common lymphoid progenitor | 9.03e-14 | 53 |
hematopoietic cell | 1.75e-13 | 177 |
lymphoid lineage restricted progenitor cell | 2.63e-13 | 52 |
nongranular leukocyte | 2.82e-12 | 115 |
lymphocyte of B lineage | 2.75e-09 | 24 |
pro-B cell | 2.75e-09 | 24 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.09e-23 | 114 |
neural tube | 1.67e-20 | 56 |
neural rod | 1.67e-20 | 56 |
future spinal cord | 1.67e-20 | 56 |
neural keel | 1.67e-20 | 56 |
regional part of nervous system | 3.07e-19 | 53 |
regional part of brain | 3.07e-19 | 53 |
regional part of forebrain | 3.04e-18 | 41 |
forebrain | 3.04e-18 | 41 |
anterior neural tube | 3.04e-18 | 41 |
future forebrain | 3.04e-18 | 41 |
central nervous system | 5.29e-17 | 81 |
nervous system | 2.69e-15 | 89 |
brain grey matter | 5.84e-15 | 34 |
gray matter | 5.84e-15 | 34 |
telencephalon | 1.22e-14 | 34 |
brain | 3.00e-14 | 68 |
future brain | 3.00e-14 | 68 |
cerebral hemisphere | 4.01e-14 | 32 |
regional part of telencephalon | 6.25e-14 | 32 |
neural plate | 4.53e-12 | 82 |
presumptive neural plate | 4.53e-12 | 82 |
pre-chordal neural plate | 3.63e-11 | 61 |
neurectoderm | 4.06e-11 | 86 |
regional part of cerebral cortex | 5.41e-11 | 22 |
cerebral cortex | 7.95e-11 | 25 |
pallium | 7.95e-11 | 25 |
ecto-epithelium | 1.15e-10 | 104 |
neocortex | 6.54e-10 | 20 |
ectoderm-derived structure | 7.52e-09 | 171 |
ectoderm | 7.52e-09 | 171 |
presumptive ectoderm | 7.52e-09 | 171 |
organ system subdivision | 4.85e-08 | 223 |