FFCP PHASE1:Hg19::chr17:48271957..48271994,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:48271957..48271994,- to FFCP PHASE1:Hg19::chr17:48271957..48271994,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-244bp_to_ENST00000463440_5end | |||
|cluster_id=chr17:48271957..48271994,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_37_at_COL1A1_5end | |||
|id=chr17:48271957..48271994,- | |||
|ontology_enrichment_celltype=CL:0000055!2.80e-38!180;CL:0000057!1.01e-25!75;CL:0000680!4.02e-14!57;CL:0000056!4.02e-14!57;CL:0000355!4.02e-14!57;CL:0000183!6.53e-14!59;CL:0000187!2.11e-13!54;CL:0000393!4.56e-11!60;CL:0000211!4.56e-11!60;CL:0000048!9.75e-11!430;CL:0000723!2.52e-10!436;CL:0000034!1.06e-09!444;CL:0000192!2.83e-09!42;CL:0000514!2.83e-09!42;CL:0002371!1.04e-08!591;CL:0002620!1.58e-08!23;CL:0000144!2.28e-08!625;CL:0002334!8.09e-08!12;CL:0002494!1.69e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000134;3.67e-10;55!CL:0000048;1.53e-09;58!CL:0000723;2.46e-09;61!CL:0000057;5.38e-09;73!CL:0000499;1.01e-08;28!CL:0002320;1.25e-08;188!CL:0000327;1.40e-07;15!CL:0000187;1.99e-07;55!CL:0000034;7.89e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.92e-22,76;CL:0000048,5.23e-16,427;CL:0000723,3.46e-15,433;CL:0000034,3.88e-14,441;CL:0000680,3.79e-11,58;CL:0000056,3.79e-11,58;CL:0000355,3.79e-11,58;CL:0000187,9.58e-11,55;CL:0002320,3.00e-09,361;CL:0000393,1.02e-08,61;CL:0000211,1.02e-08,61;CL:0000499,1.07e-08,28;CL:0000134,3.93e-08,354;CL:0000327,1.72e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.65e-18!83;UBERON:0002329!6.65e-18!83;UBERON:0003077!6.65e-18!83;UBERON:0003059!6.65e-18!83;UBERON:0007282!6.65e-18!83;UBERON:0009618!6.65e-18!83;UBERON:0007285!6.65e-18!83;UBERON:0004290!2.75e-16!70;UBERON:0001134!6.33e-15!61;UBERON:0002036!6.33e-15!61;UBERON:0003082!6.33e-15!61;UBERON:0002385!1.59e-14!63;UBERON:0001015!1.59e-14!63;UBERON:0000383!1.59e-14!63;UBERON:0000486!5.75e-13!82;UBERON:0005256!5.92e-12!143;UBERON:0002100!2.25e-09!216;UBERON:0003102!6.67e-09!95;UBERON:0002199!6.97e-09!45;UBERON:0002416!6.97e-09!45;UBERON:0000475!8.22e-09!365;UBERON:0002097!2.39e-07!40;UBERON:0001013!4.74e-07!14;UBERON:0004872!5.57e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;2.07e-08;198!UBERON:0003688;7.21e-08;6!UBERON:0002358;7.21e-08;6!UBERON:0003684;7.21e-08;6!UBERON:0001178;7.21e-08;6!UBERON:0004457;1.29e-07;9!UBERON:0000042;1.29e-07;9!UBERON:0003104;4.09e-07;7!UBERON:0009142;4.09e-07;7!UBERON:0001013;4.26e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,7.23e-12,73;UBERON:0001134,7.76e-12,62;UBERON:0002036,7.76e-12,62;UBERON:0003082,7.76e-12,62;UBERON:0002329,1.53e-11,71;UBERON:0003059,1.53e-11,71;UBERON:0007282,1.53e-11,71;UBERON:0004290,1.53e-11,71;UBERON:0009618,1.53e-11,71;UBERON:0003077,3.28e-11,72;UBERON:0007285,3.28e-11,72;UBERON:0002385,4.15e-11,64;UBERON:0001015,4.15e-11,64;UBERON:0000383,4.15e-11,64;UBERON:0007503,8.94e-11,78;UBERON:0002384,2.00e-09,371;UBERON:0000486,2.02e-09,83;UBERON:0003104,1.49e-08,160;UBERON:0009142,1.49e-08,160;UBERON:0005256,2.37e-08,122;UBERON:0003688,7.61e-08,6;UBERON:0002358,7.61e-08,6;UBERON:0003684,7.61e-08,6;UBERON:0001178,7.61e-08,6;UBERON:0001013,4.19e-07,14 | |||
|phase1_expression=7.99384868790449,9.42042305120326,15.7868932587488,11.0080628188443,11.6209884551095,7.85104671690332,5.06599756336621,1.26343974685366,0.783556884599516,0.491467873003018,0,1.09220686065086,4.48403862988371,0.495065411840187,0.994192127183747,0,0,1.46062018077475,1.46379839637152,2.09305798730539,4.69201589861782,4.70182082217132,0,0.273748850145768,1.25542639594803,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.68280343881454,1.91793842765295,5.06014813338393,7.52006865953834,3.91085601194224,6.36228757640879,8.75942766544745,0.283604451492204,2.21729397462564,2.0202000709419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8364853915472,4.43206790826029,1.32409180813219,18.9312169694217,6.38403087957043,3.36406560085384,11.7423895302675,8.6333641946006,0.311211035399766,2.55950276932407,1.47115712802113,5.75158225050739,4.60940739583999,0.234321431833797,0,0.570471821544449,0.597794722207204,0.23486899728753,1.13311061057692,0.842704840213491,1.02077085627447,0.737005903870608,0.516628905878827,24.9480600029231,16.8141511909419,10.9219363432563,5.74894513452991,0.336672227908132,0.625592599359821,0.277064115484183,4.82875382968922,9.50112166976961,10.2161880056486,1.24775401476023,5.202299434977,8.11518077510556,6.99375273826554,8.70264178644767,3.50378599410692,5.92573242104947,5.02515512095292,7.25738228637445,4.77441325289873,3.78650661366172,7.08784219545705,4.36444353410792,9.23024940543197,1.41052937518696,0.847802961552438,0.193260853163297,0,0,0,0,0.232387885739037,0.310983165046111,0,0.36497735907583,3.12899064659632,1.92972281457866,1.38134921352481,1.85747171212792,0.721879481669586,0,0,0.241011029883482,0,0,0,0,0,0,0,2.80483547606892,6.5851841813024,16.1709582524096,0,0,0,0,0,0.857839051492628,0.109750285408626,0,0,0.0925884451585296,0,1.03993478527958,1.44331342025273,0,1.05667824812239,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.616964956219941,0,0,1.00917975910825,3.05172048183296,0.95339771567235,5.30014034606889,10.7296933755565,2.535908257668,6.11657668145202,5.2003718455683,1.28603687131071,0,1.3321108950805,4.14636181608628,17.9065129779176,3.29296134712308,0.325736184293735,2.84313558994037,1.58390374586686,0.602878754119172,0.871533458600294,0.299918973546171,0,0,0,4.79249710983165,19.5265290917994,2.85273810081437,1.88215698667853,2.05476322550383,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,1.34960640891054,1.50051156317903,2.44138521329762,35.7709881832988,21.4114786556594,16.5587535785631,6.09135357962109,6.62081419400982,11.3703752027992,0,2.65690239414175,7.37476674166813,1.47702144595741,6.2656370388077,9.26487244289311,0,0,0,0.606255142892519,1.66435439510497,4.23346410661552,15.8788997004017,7.98002261097925,25.5400685934097,19.6052898361222,8.18731598506726,26.8626048309825,7.42090332224955,0.925258162815933,4.79416658345443,0.821271560138091,0.519254429183621,1.27831416305955,0,0.200506470303285,0,3.67406234126742,5.09855270418808,4.98272776845812,0,0,0.784349769176855,0,0,0,0,0.647747748306418,1.54227252690289,0,4.01351819083883,0,0,0,0,0,0,0,0,0,0.824125183365091,0.330037999682352,1.72279661398852,0.650060246036521,6.42735719376638,0.48335359146061,1.23238893691716,1.84204409671355,2.20538515975249,1.6113036730241,3.77043404176994,1.53407929348982,7.3896589586792,0.165284915360978,0.384380134730212,0,0,0.929691098594572,14.4813679542094,0,1.84820148105653,0.532306030317022,0,0.74129687641568,0.572499546967965,1.116475108079,2.53103539774981,8.95961911441977,2.303080121802,1.28381696410176,0.95460974377781,2.35484592059769,1.79872457583315,7.68703683260953,3.88780927740765,0.808729926293264,3.17020642346017,0.842516912477962,3.41343617362713,0.731140468893853,0,3.54899769660763,9.04994764503762,7.910568163417,2.2054613741845,0,0.438450885253763,2.89387767133344,0.655894752046633,2.23201414658974,1.239293992399,3.94373843545138,1.14729081763241,2.65272410735427,1.78335525740625,0,2.32218398827431,3.62224382255892,1.13841952129715,1.04980416073495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0.23874448473769,0,0,0,0,0,0,0,1.19548792950642,0,0,0,0,10.5753459805015,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520874984799877,0,0.120596438625408,0,0,0,0,0,0,2.07765697960252,0.113942055847001,0,0,0,0,2.74792780205587,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4441205797345,0,0,0,0,17.6567082405734,0,0,0.19566461893209,0,0,3.62972148145992,0.30607276163049,0.31593289814244,0,0,0.664653872707185,0,0,0,0,0,0,0,0,1.04836000945218,0.171986032471617,0,0,0,0.0969890164884194,0.353024506766001,6.55344148263544,0,0,0,0,0.240476460754601,0.640358984218058,0,0,0,0,0,0,0,0,0,0.101998217636322,0.577901179803038,0,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| ||
|short_description=p37@COL1A1 | |||
}} | }} |
Latest revision as of 00:50, 16 September 2015
Short description: | p37@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_37_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | -244bp_to_ENST00000463440_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.92e-22 | 76 |
multi fate stem cell | 5.23e-16 | 427 |
somatic stem cell | 3.46e-15 | 433 |
stem cell | 3.88e-14 | 441 |
muscle precursor cell | 3.79e-11 | 58 |
myoblast | 3.79e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.79e-11 | 58 |
muscle cell | 9.58e-11 | 55 |
connective tissue cell | 3.00e-09 | 361 |
electrically responsive cell | 1.02e-08 | 61 |
electrically active cell | 1.02e-08 | 61 |
stromal cell | 1.07e-08 | 28 |
mesenchymal cell | 3.93e-08 | 354 |
extracellular matrix secreting cell | 1.72e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 7.23e-12 | 73 |
skeletal muscle tissue | 7.76e-12 | 62 |
striated muscle tissue | 7.76e-12 | 62 |
myotome | 7.76e-12 | 62 |
somite | 1.53e-11 | 71 |
presomitic mesoderm | 1.53e-11 | 71 |
presumptive segmental plate | 1.53e-11 | 71 |
dermomyotome | 1.53e-11 | 71 |
trunk paraxial mesoderm | 1.53e-11 | 71 |
paraxial mesoderm | 3.28e-11 | 72 |
presumptive paraxial mesoderm | 3.28e-11 | 72 |
muscle tissue | 4.15e-11 | 64 |
musculature | 4.15e-11 | 64 |
musculature of body | 4.15e-11 | 64 |
epithelial vesicle | 8.94e-11 | 78 |
connective tissue | 2.00e-09 | 371 |
multilaminar epithelium | 2.02e-09 | 83 |
mesenchyme | 1.49e-08 | 160 |
entire embryonic mesenchyme | 1.49e-08 | 160 |
trunk mesenchyme | 2.37e-08 | 122 |
omentum | 7.61e-08 | 6 |
peritoneum | 7.61e-08 | 6 |
abdominal cavity | 7.61e-08 | 6 |
visceral peritoneum | 7.61e-08 | 6 |
adipose tissue | 4.19e-07 | 14 |