FFCP PHASE1:Hg19::chr19:12946236..12946262,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=83546 | |EntrezGene=83546 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30310 | |HGNC=30310 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N210 | |UniProt=Q8N210 | ||
|association_with_transcript=0bp_to_ENST00000393233_5end | |||
|cluster_id=chr19:12946236..12946262,- | |||
|description=CAGE_peak_3_at_RTBDN_5end | |||
|id=chr19:12946236..12946262,- | |||
|ontology_enrichment_celltype=CL:0000039!9.59e-07!7;CL:0000586!9.59e-07!7 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008425;9.09e-08;1 | |||
|ontology_enrichment_disease=DOID:0050687!3.10e-21!143;DOID:305!1.46e-15!106;DOID:14566!5.96e-15!239;DOID:162!2.33e-14!235;DOID:3095!3.29e-10!22;DOID:2994!3.29e-10!22 | |||
|ontology_enrichment_disease_v019=DOID:5409;1.12e-14;4!DOID:1325;1.36e-08;7!DOID:3904;1.36e-08;7!DOID:6193;2.74e-07;1!DOID:3347;2.74e-07;1!DOID:3905;8.91e-07;9 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,1.51e-14,4;DOID:1325,1.61e-08,7;DOID:3904,1.61e-08,7;DOID:6193,1.72e-07,1;DOID:3347,2.35e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.08e-20!94;UBERON:0001016!1.08e-20!94;UBERON:0001017!1.52e-18!82;UBERON:0005743!3.20e-18!86;UBERON:0001049!2.77e-16!57;UBERON:0005068!2.77e-16!57;UBERON:0006241!2.77e-16!57;UBERON:0007135!2.77e-16!57;UBERON:0000955!3.12e-15!69;UBERON:0006238!3.12e-15!69;UBERON:0002346!1.27e-14!90;UBERON:0003075!4.80e-14!86;UBERON:0007284!4.80e-14!86;UBERON:0002780!3.76e-13!41;UBERON:0001890!3.76e-13!41;UBERON:0006240!3.76e-13!41;UBERON:0002616!4.07e-13!59;UBERON:0003080!1.10e-12!42;UBERON:0002619!6.72e-12!22;UBERON:0001950!1.39e-11!20;UBERON:0000956!2.54e-11!25;UBERON:0000203!2.54e-11!25;UBERON:0000924!3.00e-11!173;UBERON:0006601!3.00e-11!173;UBERON:0002020!7.24e-11!34;UBERON:0003528!7.24e-11!34;UBERON:0001893!9.62e-11!34;UBERON:0004121!1.04e-10!169;UBERON:0001869!1.39e-10!32;UBERON:0003056!1.97e-10!61;UBERON:0002791!8.97e-10!33;UBERON:0000200!2.59e-09!6;UBERON:0007023!3.46e-09!115;UBERON:0000153!7.79e-08!129;UBERON:0007811!7.79e-08!129;UBERON:0000033!2.37e-07!123;UBERON:0003296!4.97e-07!4;UBERON:0010133!4.97e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000200;4.17e-16;6!UBERON:0001950;1.05e-09;20!UBERON:0002619;8.15e-09;22!UBERON:0000956;9.78e-08;25!UBERON:0000203;9.78e-08;25!UBERON:0002581;2.74e-07;1!UBERON:0002902;2.74e-07;1!UBERON:0002022;2.74e-07;1!UBERON:0009899;2.74e-07;1!UBERON:0007190;2.74e-07;1!UBERON:0001869;3.66e-07;32!UBERON:0001893;5.64e-07;34!UBERON:0000955;9.08e-07;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000200,4.35e-16,6;UBERON:0001017,8.05e-10,81;UBERON:0001950,1.12e-09,20;UBERON:0002619,8.66e-09,22;UBERON:0001016,1.29e-08,89;UBERON:0000955,1.92e-08,68;UBERON:0006238,1.92e-08,68;UBERON:0001869,5.60e-08,32;UBERON:0002780,6.05e-08,41;UBERON:0001890,6.05e-08,41;UBERON:0003080,6.05e-08,41;UBERON:0006240,6.05e-08,41;UBERON:0003056,6.08e-08,61;UBERON:0000956,1.03e-07,25;UBERON:0000203,1.03e-07,25;UBERON:0011216,1.68e-07,223;UBERON:0001893,1.79e-07,34;UBERON:0002581,2.50e-07,1;UBERON:0007190,3.01e-07,1;UBERON:0002022,3.40e-07,1;UBERON:0002902,4.90e-07,1;UBERON:0009899,4.90e-07,1 | |||
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| ||
|short_description=p3@RTBDN | |||
}} | }} |
Latest revision as of 21:37, 15 September 2015
Short description: | p3@RTBDN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RTBDN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000393233_5end |
EntrezGene: | RTBDN |
HGNC: | 30310 |
UniProt: | Q8N210 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gyrus | 4.35e-16 | 6 |
central nervous system | 8.05e-10 | 81 |
neocortex | 1.12e-09 | 20 |
regional part of cerebral cortex | 8.66e-09 | 22 |
nervous system | 1.29e-08 | 89 |
brain | 1.92e-08 | 68 |
future brain | 1.92e-08 | 68 |
cerebral hemisphere | 5.60e-08 | 32 |
regional part of forebrain | 6.05e-08 | 41 |
forebrain | 6.05e-08 | 41 |
anterior neural tube | 6.05e-08 | 41 |
future forebrain | 6.05e-08 | 41 |
pre-chordal neural plate | 6.08e-08 | 61 |
cerebral cortex | 1.03e-07 | 25 |
pallium | 1.03e-07 | 25 |
organ system subdivision | 1.68e-07 | 223 |
telencephalon | 1.79e-07 | 34 |
postcentral gyrus | 2.50e-07 | 1 |
paracentral gyrus | 3.01e-07 | 1 |
insula | 3.40e-07 | 1 |
occipital pole | 4.90e-07 | 1 |
pole of cerebral hemisphere | 4.90e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 1.51e-14 | 4 |
bronchus cancer | 1.61e-08 | 7 |
bronchogenic carcinoma | 1.61e-08 | 7 |
epithelioid sarcoma | 1.72e-07 | 1 |
osteosarcoma | 2.35e-07 | 1 |