FFCP PHASE1:Hg19::chr19:39421556..39421632,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:39421556..39421632,+ to FFCP PHASE1:Hg19::chr19:39421556..39421632,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6183 | |EntrezGene=6183 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10380 | |HGNC=10380 | ||
|TSSclassifier=strong | |||
|UniProt=O15235 | |UniProt=O15235 | ||
|association_with_transcript=0bp_to_ENST00000407800,NM_021107,NM_033363,uc002okd.2,uc002oke.2_5end | |||
|cluster_id=chr19:39421556..39421632,+ | |||
|coexpression_cluster_id=C2487 | |||
|description=CAGE_peak_1_at_MRPS12_5end | |||
|id=chr19:39421556..39421632,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.04e-27!254;CL:0000548!5.44e-25!679;CL:0000004!5.44e-25!679;CL:0000255!5.44e-25!679;CL:0000012!2.62e-24!682;CL:0000220!4.48e-20!246;CL:0002321!6.73e-20!248;CL:0000222!8.77e-15!119;CL:0000144!1.79e-13!625;CL:0000003!3.70e-13!722;CL:0002371!1.52e-10!591;CL:0000063!1.42e-09!578;CL:0000183!3.91e-09!59;CL:0000076!1.74e-08!62;CL:1000497!3.82e-08!18;CL:0002518!3.82e-08!18;CL:0000393!9.34e-08!60;CL:0000211!9.34e-08!60;CL:0000680!1.82e-07!57;CL:0000056!1.82e-07!57;CL:0000355!1.82e-07!57;CL:0000187!1.97e-07!54;CL:0000213!2.19e-07!57;CL:0000215!2.19e-07!57;CL:1000449!2.34e-07!16;CL:0000055!3.90e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.04e-08;17!CL:0002518;2.04e-08;17!CL:1000449;1.29e-07;15!CL:0002681;7.97e-07;12!CL:0002584;7.97e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.04e-27,253;CL:0002321,2.97e-20,250;CL:0000222,4.27e-15,121;CL:0000076,1.12e-08,63;CL:1000497,2.05e-08,17;CL:0002518,2.05e-08,17;CL:0000393,1.02e-07,61;CL:0000211,1.02e-07,61;CL:0000213,1.05e-07,58;CL:0000215,1.05e-07,58;CL:1000449,1.26e-07,15;CL:0000680,2.00e-07,58;CL:0000056,2.00e-07,58;CL:0000355,2.00e-07,58;CL:0000187,2.18e-07,55;CL:0002681,7.99e-07,12;CL:0002584,7.99e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:14566!9.46e-14!239;DOID:162!9.87e-14!235;DOID:0050686!1.26e-08!137;DOID:2531!1.15e-07!51;DOID:0060083!1.15e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,9.46e-14,239;DOID:162,9.87e-14,235;DOID:0050686,1.26e-08,137;DOID:2531,1.15e-07,51;DOID:0060083,1.15e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0002100!5.15e-16!216;UBERON:0003104!3.25e-14!238;UBERON:0009142!3.25e-14!238;UBERON:0005256!6.87e-12!143;UBERON:0000486!2.32e-10!82;UBERON:0009569!8.84e-10!113;UBERON:0000490!1.33e-09!138;UBERON:0004290!4.26e-09!70;UBERON:0003914!1.29e-08!118;UBERON:0000914!1.55e-08!83;UBERON:0002329!1.55e-08!83;UBERON:0003077!1.55e-08!83;UBERON:0003059!1.55e-08!83;UBERON:0007282!1.55e-08!83;UBERON:0009618!1.55e-08!83;UBERON:0007285!1.55e-08!83;UBERON:0005177!1.80e-07!107;UBERON:0004211!2.34e-07!16;UBERON:0001285!2.34e-07!16;UBERON:0007684!2.34e-07!16;UBERON:0003220!2.34e-07!16;UBERON:0004208!2.34e-07!16;UBERON:0001851!3.09e-07!16;UBERON:0001134!3.23e-07!61;UBERON:0002036!3.23e-07!61;UBERON:0003082!3.23e-07!61;UBERON:0006554!8.66e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;4.21e-08;30!UBERON:0001008;4.21e-08;30!UBERON:0002113;4.58e-08;24!UBERON:0011143;4.58e-08;24!UBERON:0006555;1.29e-07;15!UBERON:0004819;1.29e-07;15!UBERON:0001285;1.29e-07;15!UBERON:0007684;1.29e-07;15!UBERON:0001851;1.71e-07;15!UBERON:0000353;5.15e-07;15!UBERON:0001225;7.97e-07;12!UBERON:0008987;7.97e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,3.67e-17,199;UBERON:0007503,1.02e-11,78;UBERON:0003104,2.21e-11,160;UBERON:0009142,2.21e-11,160;UBERON:0000490,2.25e-11,148;UBERON:0000486,2.54e-10,83;UBERON:0005256,5.21e-10,122;UBERON:0009569,1.34e-09,112;UBERON:0002329,4.69e-09,71;UBERON:0003059,4.69e-09,71;UBERON:0007282,4.69e-09,71;UBERON:0004290,4.69e-09,71;UBERON:0009618,4.69e-09,71;UBERON:0003914,1.26e-08,117;UBERON:0003077,1.44e-08,72;UBERON:0007285,1.44e-08,72;UBERON:0007524,1.49e-08,73;UBERON:0005177,1.76e-08,101;UBERON:0006554,1.21e-07,47;UBERON:0004211,1.26e-07,15;UBERON:0009773,1.26e-07,15;UBERON:0001231,1.26e-07,15;UBERON:0001285,1.26e-07,15;UBERON:0007684,1.26e-07,15;UBERON:0004208,1.26e-07,15;UBERON:0001851,1.68e-07,15;UBERON:0001134,3.49e-07,62;UBERON:0002036,3.49e-07,62;UBERON:0003082,3.49e-07,62;UBERON:0001008,4.86e-07,48;UBERON:0000353,5.05e-07,15;UBERON:0001225,7.99e-07,12;UBERON:0008987,7.99e-07,12 | |||
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|short_description=p1@MRPS12 | |||
}} | }} |
Latest revision as of 21:07, 17 September 2015
Short description: | p1@MRPS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MRPS12_5end |
Coexpression cluster: | C2487_Alveolar_Mesenchymal_Renal_Placental_Bronchial_acute_Tracheal |
Association with transcript: | 0bp_to_ENST00000407800, NM_021107, NM_033363, uc002okd.2, uc002oke.2_5end |
EntrezGene: | MRPS12 |
HGNC: | 10380 |
UniProt: | O15235 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.04e-27 | 253 |
embryonic cell | 2.97e-20 | 250 |
mesodermal cell | 4.27e-15 | 121 |
squamous epithelial cell | 1.12e-08 | 63 |
kidney cell | 2.05e-08 | 17 |
kidney epithelial cell | 2.05e-08 | 17 |
electrically responsive cell | 1.02e-07 | 61 |
electrically active cell | 1.02e-07 | 61 |
lining cell | 1.05e-07 | 58 |
barrier cell | 1.05e-07 | 58 |
epithelial cell of nephron | 1.26e-07 | 15 |
muscle precursor cell | 2.00e-07 | 58 |
myoblast | 2.00e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.00e-07 | 58 |
muscle cell | 2.18e-07 | 55 |
kidney cortical cell | 7.99e-07 | 12 |
renal cortical epithelial cell | 7.99e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
trunk | 3.67e-17 | 199 |
epithelial vesicle | 1.02e-11 | 78 |
mesenchyme | 2.21e-11 | 160 |
entire embryonic mesenchyme | 2.21e-11 | 160 |
unilaminar epithelium | 2.25e-11 | 148 |
multilaminar epithelium | 2.54e-10 | 83 |
trunk mesenchyme | 5.21e-10 | 122 |
subdivision of trunk | 1.34e-09 | 112 |
somite | 4.69e-09 | 71 |
presomitic mesoderm | 4.69e-09 | 71 |
presumptive segmental plate | 4.69e-09 | 71 |
dermomyotome | 4.69e-09 | 71 |
trunk paraxial mesoderm | 4.69e-09 | 71 |
epithelial tube | 1.26e-08 | 117 |
paraxial mesoderm | 1.44e-08 | 72 |
presumptive paraxial mesoderm | 1.44e-08 | 72 |
dense mesenchyme tissue | 1.49e-08 | 73 |
trunk region element | 1.76e-08 | 101 |
urinary system structure | 1.21e-07 | 47 |
nephron epithelium | 1.26e-07 | 15 |
renal tubule | 1.26e-07 | 15 |
nephron tubule | 1.26e-07 | 15 |
nephron | 1.26e-07 | 15 |
uriniferous tubule | 1.26e-07 | 15 |
nephrogenic mesenchyme | 1.26e-07 | 15 |
cortex | 1.68e-07 | 15 |
skeletal muscle tissue | 3.49e-07 | 62 |
striated muscle tissue | 3.49e-07 | 62 |
myotome | 3.49e-07 | 62 |
renal system | 4.86e-07 | 48 |
parenchyma | 5.05e-07 | 15 |
cortex of kidney | 7.99e-07 | 12 |
renal parenchyma | 7.99e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 9.46e-14 | 239 |
cancer | 9.87e-14 | 235 |
organ system cancer | 1.26e-08 | 137 |
hematologic cancer | 1.15e-07 | 51 |
immune system cancer | 1.15e-07 | 51 |