FFCP PHASE1:Hg19::chr1:156722015..156722034,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:156722015..156722034,- to FFCP PHASE1:Hg19::chr1:156722015..156722034,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3068 | |EntrezGene=3068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4856 | |HGNC=4856 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SZ08,P51858 | |UniProt=Q5SZ08,P51858 | ||
|association_with_transcript=0bp_to_ENST00000368209,NM_001126051,uc001fpz.3_5end | |||
|cluster_id=chr1:156722015..156722034,- | |||
|description=CAGE_peak_8_at_HDGF_5end | |||
|id=chr1:156722015..156722034,- | |||
|ontology_enrichment_celltype=CL:0000222!6.95e-23!119;CL:0000213!4.04e-17!57;CL:0000215!4.04e-17!57;CL:0002078!2.82e-14!44;CL:0000115!4.13e-14!35;CL:0000548!2.34e-13!679;CL:0000004!2.34e-13!679;CL:0000255!2.34e-13!679;CL:0000012!3.42e-13!682;CL:0000220!3.52e-12!246;CL:0002321!4.37e-12!248;CL:0002139!1.80e-11!24;CL:0000071!4.62e-10!18;CL:0002546!4.62e-10!18;CL:0000055!8.93e-09!180;CL:0000066!2.06e-08!254;CL:0000144!2.93e-08!625;CL:0000359!2.48e-07!32;CL:1000413!4.95e-07!9;CL:0000192!6.21e-07!42;CL:0000514!6.21e-07!42;CL:0000003!6.82e-07!722;CL:0002371!9.99e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.03e-13;36!CL:0002139;3.57e-12;24!CL:0000071;2.39e-11;18!CL:0000213;2.63e-11;58!CL:0000215;2.63e-11;58!CL:0002078;3.21e-10;45!CL:1000413;4.23e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.90e-23,121;CL:0000213,1.21e-18,58;CL:0000215,1.21e-18,58;CL:0000115,1.01e-15,36;CL:0002078,2.97e-15,45;CL:0002139,1.09e-12,24;CL:0002321,1.30e-12,250;CL:0000071,4.99e-11,18;CL:0002546,4.99e-11,18;CL:0000066,6.73e-09,253;CL:1000413,6.43e-08,9;CL:0000359,5.71e-07,32 | |||
|ontology_enrichment_development_v019=CL:0002546;2.39e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!1.75e-17!69;UBERON:0002049!9.51e-17!79;UBERON:0007798!9.51e-17!79;UBERON:0001981!1.21e-15!60;UBERON:0007500!1.21e-15!60;UBERON:0004537!1.21e-15!60;UBERON:0006965!1.21e-15!60;UBERON:0001637!5.19e-14!42;UBERON:0003509!5.19e-14!42;UBERON:0004572!5.19e-14!42;UBERON:0004872!5.50e-14!84;UBERON:0003914!5.17e-13!118;UBERON:0004573!5.28e-11!33;UBERON:0004571!5.28e-11!33;UBERON:0004535!8.02e-11!110;UBERON:0006914!2.18e-10!25;UBERON:0000487!2.28e-10!22;UBERON:0001986!4.62e-10!18;UBERON:0004638!4.62e-10!18;UBERON:0004852!4.62e-10!18;UBERON:0001009!8.13e-10!113;UBERON:0000947!5.71e-08!21;UBERON:0010191!5.71e-08!21;UBERON:0000926!6.49e-08!448;UBERON:0004120!6.49e-08!448;UBERON:0006603!6.49e-08!448;UBERON:0001737!3.89e-07!9;UBERON:0003915!4.95e-07!9;UBERON:0004700!4.95e-07!9;UBERON:0001917!4.95e-07!9;UBERON:0003081!5.43e-07!216;UBERON:0002100!7.90e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;6.97e-12;22!UBERON:0001637;1.99e-11;42!UBERON:0003509;1.99e-11;42!UBERON:0004572;1.99e-11;42!UBERON:0004638;2.39e-11;18!UBERON:0001986;2.39e-11;18!UBERON:0004852;2.39e-11;18!UBERON:0006914;2.65e-11;25!UBERON:0004573;6.43e-11;33!UBERON:0004571;6.43e-11;33!UBERON:0007500;3.27e-10;56!UBERON:0001981;3.27e-10;56!UBERON:0004537;3.27e-10;56!UBERON:0000055;2.83e-09;65!UBERON:0003914;3.27e-09;74!UBERON:0001737;2.98e-08;9!UBERON:0001557;2.98e-08;9!UBERON:0000490;3.68e-08;33!UBERON:0003915;4.23e-08;9!UBERON:0004700;4.23e-08;9!UBERON:0001917;4.23e-08;9!UBERON:0000947;6.04e-08;21!UBERON:0010191;6.04e-08;21!UBERON:0000025;7.80e-08;93!UBERON:0002049;1.93e-07;75!UBERON:0007798;1.93e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.38e-19,68;UBERON:0007500,1.88e-17,59;UBERON:0001981,1.88e-17,59;UBERON:0004537,1.88e-17,59;UBERON:0006965,1.88e-17,59;UBERON:0002049,3.68e-17,78;UBERON:0007798,3.68e-17,78;UBERON:0004872,1.58e-15,83;UBERON:0001637,2.67e-15,42;UBERON:0003509,2.67e-15,42;UBERON:0004572,2.67e-15,42;UBERON:0003914,5.18e-14,117;UBERON:0004535,3.05e-12,109;UBERON:0004573,3.59e-12,33;UBERON:0004571,3.59e-12,33;UBERON:0000487,2.04e-11,22;UBERON:0001009,3.35e-11,112;UBERON:0006914,4.38e-11,25;UBERON:0004638,4.99e-11,18;UBERON:0001986,4.99e-11,18;UBERON:0004852,4.99e-11,18;UBERON:0000947,3.06e-08,21;UBERON:0010191,3.06e-08,21;UBERON:0001737,4.87e-08,9;UBERON:0003915,6.43e-08,9;UBERON:0004700,6.43e-08,9;UBERON:0001917,6.43e-08,9;UBERON:0002100,1.84e-07,199;UBERON:0007503,8.01e-07,78 | |||
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| ||
|short_description=p8@HDGF | |||
}} | }} |
Latest revision as of 17:56, 17 September 2015
Short description: | p8@HDGF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_HDGF_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000368209, NM_001126051, uc001fpz.3_5end |
EntrezGene: | HDGF |
HGNC: | 4856 |
UniProt: | Q5SZ08P51858 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.90e-23 | 121 |
lining cell | 1.21e-18 | 58 |
barrier cell | 1.21e-18 | 58 |
endothelial cell | 1.01e-15 | 36 |
meso-epithelial cell | 2.97e-15 | 45 |
endothelial cell of vascular tree | 1.09e-12 | 24 |
embryonic cell | 1.30e-12 | 250 |
blood vessel endothelial cell | 4.99e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.99e-11 | 18 |
epithelial cell | 6.73e-09 | 253 |
endothelial cell of artery | 6.43e-08 | 9 |
vascular associated smooth muscle cell | 5.71e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.38e-19 | 68 |
epithelial tube open at both ends | 1.88e-17 | 59 |
blood vessel | 1.88e-17 | 59 |
blood vasculature | 1.88e-17 | 59 |
vascular cord | 1.88e-17 | 59 |
vasculature | 3.68e-17 | 78 |
vascular system | 3.68e-17 | 78 |
splanchnic layer of lateral plate mesoderm | 1.58e-15 | 83 |
artery | 2.67e-15 | 42 |
arterial blood vessel | 2.67e-15 | 42 |
arterial system | 2.67e-15 | 42 |
epithelial tube | 5.18e-14 | 117 |
cardiovascular system | 3.05e-12 | 109 |
systemic artery | 3.59e-12 | 33 |
systemic arterial system | 3.59e-12 | 33 |
simple squamous epithelium | 2.04e-11 | 22 |
circulatory system | 3.35e-11 | 112 |
squamous epithelium | 4.38e-11 | 25 |
blood vessel endothelium | 4.99e-11 | 18 |
endothelium | 4.99e-11 | 18 |
cardiovascular system endothelium | 4.99e-11 | 18 |
aorta | 3.06e-08 | 21 |
aortic system | 3.06e-08 | 21 |
larynx | 4.87e-08 | 9 |
endothelial tube | 6.43e-08 | 9 |
arterial system endothelium | 6.43e-08 | 9 |
endothelium of artery | 6.43e-08 | 9 |
trunk | 1.84e-07 | 199 |
epithelial vesicle | 8.01e-07 | 78 |