FFCP PHASE1:Hg19::chr1:236030216..236030241,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:236030216..236030241,- to FFCP PHASE1:Hg19::chr1:236030216..236030241,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1130 | |EntrezGene=1130 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1968 | |HGNC=1968 | ||
|TSSclassifier=strong | |||
|UniProt=Q99698 | |UniProt=Q99698 | ||
|association_with_transcript=0bp_to_ENST00000389793,ENST00000389794,NM_000081,uc001hxj.2,uc001hxn.1_5end | |||
|cluster_id=chr1:236030216..236030241,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_2_at_LYST_5end | |||
|id=chr1:236030216..236030241,- | |||
|ontology_enrichment_celltype=CL:0000738!7.58e-37!140;CL:0000037!1.50e-31!172;CL:0000566!1.50e-31!172;CL:0002032!4.26e-30!165;CL:0000837!4.26e-30!165;CL:0000766!6.25e-30!76;CL:0002031!2.40e-29!124;CL:0000988!8.23e-29!182;CL:0002087!3.67e-27!119;CL:0000557!3.68e-26!71;CL:0000839!9.19e-25!70;CL:0000763!2.44e-24!112;CL:0000049!2.44e-24!112;CL:0002057!2.06e-23!42;CL:0002009!1.39e-22!65;CL:0002194!7.55e-22!63;CL:0000576!7.55e-22!63;CL:0000040!7.55e-22!63;CL:0000559!7.55e-22!63;CL:0000860!1.35e-20!45;CL:0002393!7.54e-07!9;CL:0002397!7.54e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;1.81e-17;48!CL:0000860;5.78e-17;33!CL:0002057;5.78e-17;33!CL:0000766;2.30e-14;69!CL:0000473;2.00e-13;39!CL:0000234;2.00e-13;39!CL:0002087;7.91e-10;104!CL:0000738;2.86e-09;136!CL:0000763;9.73e-08;100!CL:0000094;7.75e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.02e-39,136;CL:0000037,7.78e-34,168;CL:0000766,1.76e-33,72;CL:0002032,2.41e-32,161;CL:0000837,2.41e-32,161;CL:0000988,8.90e-32,177;CL:0002031,1.27e-31,120;CL:0000557,1.75e-29,67;CL:0002087,2.40e-29,115;CL:0000839,5.74e-28,66;CL:0000763,5.70e-27,108;CL:0000049,5.70e-27,108;CL:0002009,1.04e-25,61;CL:0002194,5.94e-25,59;CL:0000576,5.94e-25,59;CL:0000040,5.94e-25,59;CL:0000559,5.94e-25,59;CL:0000860,6.70e-24,42;CL:0002057,6.70e-24,42;CL:0000473,4.64e-22,48;CL:0000234,4.64e-22,48;CL:0002393,5.74e-07,9;CL:0002397,5.74e-07,9;CL:0000094,9.26e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.56e-17;42!CL:0000049;2.12e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.87e-29!102;UBERON:0003061!3.87e-29!102;UBERON:0002193!2.24e-25!112;UBERON:0002371!8.92e-21!80;UBERON:0001474!6.33e-18!86;UBERON:0004765!2.85e-15!101;UBERON:0001434!2.85e-15!101;UBERON:0007023!2.99e-14!115;UBERON:0002405!1.82e-13!115;UBERON:0000178!8.46e-09!15;UBERON:0000179!8.46e-09!15;UBERON:0000463!8.46e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.90e-09;15!UBERON:0000179;3.90e-09;15!UBERON:0000463;3.90e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.56e-32,98;UBERON:0003061,2.56e-32,98;UBERON:0002193,3.98e-28,108;UBERON:0002371,1.04e-23,76;UBERON:0002405,9.08e-21,93;UBERON:0001474,3.13e-20,82;UBERON:0004765,7.35e-18,90;UBERON:0001434,3.97e-16,100;UBERON:0007023,1.73e-14,114;UBERON:0000178,5.84e-09,15;UBERON:0000179,5.84e-09,15;UBERON:0000463,5.84e-09,15 | |||
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| ||
|short_description=p2@LYST | |||
}} | }} |
Latest revision as of 13:14, 16 September 2015
Short description: | p2@LYST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LYST_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000389793, ENST00000389794, NM_000081, uc001hxj.2, uc001hxn.1_5end |
EntrezGene: | LYST |
HGNC: | 1968 |
UniProt: | Q99698 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.02e-39 | 136 |
hematopoietic stem cell | 7.78e-34 | 168 |
myeloid leukocyte | 1.76e-33 | 72 |
hematopoietic oligopotent progenitor cell | 2.41e-32 | 161 |
hematopoietic multipotent progenitor cell | 2.41e-32 | 161 |
hematopoietic cell | 8.90e-32 | 177 |
hematopoietic lineage restricted progenitor cell | 1.27e-31 | 120 |
granulocyte monocyte progenitor cell | 1.75e-29 | 67 |
nongranular leukocyte | 2.40e-29 | 115 |
myeloid lineage restricted progenitor cell | 5.74e-28 | 66 |
myeloid cell | 5.70e-27 | 108 |
common myeloid progenitor | 5.70e-27 | 108 |
macrophage dendritic cell progenitor | 1.04e-25 | 61 |
monopoietic cell | 5.94e-25 | 59 |
monocyte | 5.94e-25 | 59 |
monoblast | 5.94e-25 | 59 |
promonocyte | 5.94e-25 | 59 |
classical monocyte | 6.70e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.70e-24 | 42 |
defensive cell | 4.64e-22 | 48 |
phagocyte | 4.64e-22 | 48 |
intermediate monocyte | 5.74e-07 | 9 |
CD14-positive, CD16-positive monocyte | 5.74e-07 | 9 |
granulocyte | 9.26e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.56e-32 | 98 |
blood island | 2.56e-32 | 98 |
hemolymphoid system | 3.98e-28 | 108 |
bone marrow | 1.04e-23 | 76 |
immune system | 9.08e-21 | 93 |
bone element | 3.13e-20 | 82 |
skeletal element | 7.35e-18 | 90 |
skeletal system | 3.97e-16 | 100 |
adult organism | 1.73e-14 | 114 |
blood | 5.84e-09 | 15 |
haemolymphatic fluid | 5.84e-09 | 15 |
organism substance | 5.84e-09 | 15 |