FFCP PHASE1:Hg19::chr21:43859686..43859724,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr21:43859686..43859724,+ to FFCP PHASE1:Hg19::chr21:43859686..43859724,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr21:43859686..43859724,+ | |||
|coexpression_cluster_id=C2634 | |||
|description=CAGE_peak_at_chr21:43859686..43859724,+ | |||
|id=chr21:43859686..43859724,+ | |||
|ontology_enrichment_celltype=CL:0000084!2.06e-28!25;CL:0000827!2.06e-28!25;CL:0000791!8.00e-22!18;CL:0000789!8.00e-22!18;CL:0002420!8.00e-22!18;CL:0002419!8.00e-22!18;CL:0000790!8.00e-22!18;CL:0000838!3.60e-20!52;CL:0000542!1.32e-19!53;CL:0000051!1.32e-19!53;CL:0000625!1.86e-14!11;CL:0000988!8.10e-13!182;CL:0000037!2.81e-12!172;CL:0000566!2.81e-12!172;CL:0002087!2.72e-11!119;CL:0000738!4.06e-11!140;CL:0000624!1.12e-10!6;CL:0002032!1.66e-10!165;CL:0000837!1.66e-10!165;CL:0002031!3.93e-10!124;CL:0000080!3.10e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.68e-41;25!CL:0000791;2.46e-39;18!CL:0000789;2.46e-39;18!CL:0002419;2.46e-39;18!CL:0000624;9.61e-23;6!CL:0000625;9.75e-22;11!CL:0000542;1.09e-12;53!CL:0000898;9.23e-12;3!CL:0000623;9.23e-12;3!CL:0000815;2.12e-08;2!CL:0000792;2.12e-08;2!CL:0002677;2.12e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,9.15e-42,25;CL:0000827,9.15e-42,25;CL:0000791,1.14e-39,18;CL:0000789,1.14e-39,18;CL:0002420,1.14e-39,18;CL:0002419,1.14e-39,18;CL:0000790,1.14e-39,18;CL:0000838,3.78e-25,52;CL:0000542,1.40e-24,53;CL:0000051,1.40e-24,53;CL:0000624,3.13e-23,6;CL:0000625,1.07e-21,11;CL:0000898,4.56e-12,3;CL:0000623,1.43e-11,3;CL:0000825,1.43e-11,3;CL:0002087,8.90e-10,115;CL:0000815,1.06e-08,2;CL:0000792,1.06e-08,2;CL:0002677,1.06e-08,2;CL:0002031,4.07e-08,120;CL:0000738,1.47e-07,136;CL:0000988,6.91e-07,177;CL:0000037,9.42e-07,168 | |||
|ontology_enrichment_development_v019=CL:0000790;2.46e-39;18!CL:0000051;1.09e-12;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.52e-18!15;UBERON:0000179!1.52e-18!15;UBERON:0000463!1.52e-18!15;UBERON:0004177!5.57e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.97e-15;15!UBERON:0000179;5.97e-15;15!UBERON:0000463;5.97e-15;15!UBERON:0002390;5.47e-09;32!UBERON:0002370;6.57e-09;2!UBERON:0005058;6.57e-09;2!UBERON:0009113;6.57e-09;2!UBERON:0002193;5.52e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.15e-15,15;UBERON:0000179,7.15e-15,15;UBERON:0000463,7.15e-15,15;UBERON:0002370,2.29e-09,4;UBERON:0005058,2.29e-09,4;UBERON:0009113,2.29e-09,4;UBERON:0003295,2.29e-09,4;UBERON:0005562,2.29e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.328402357799783,0.0787107813136792,0,0.383829398097213,0.154816123316076,0,0,0,0,0.710846162437108,0,0,0.601633342410425,0.217010870715852,0.223915474239924,0,0,0,0,0,0.232429036905685,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,3.93419540227666,5.50215067848831,1.85041349099558,2.50779743086017,1.95553359980154,2.8406868344084,1.94826728407911,2.89667187901451,1.76763544484902,0.443067789167242,4.60366568400527,6.78883994546078,3.64166173167659,16.9371041741786,5.52700035571697,9.27369874352168,8.15576097391332,1.87278579662799,1.04535523804977,4.19244567980995,1.53288197440768,2.06176467289578,5.06039384039006,0.95569624297229,3.90650072313851,0,1.20460095262218,2.43174561193395,2.49861453104692,0.710331756132051,1.64225599384209,2.01606743224732,2.94184215361858,3.91025890483557,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,1.50939302401662,1.28343036279748,0.254094624222463,0,1.54657762555539,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3082884179662,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.987884678879706,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,1.52927441428475,1.13929437434833,1.90585420366231,1.64544909234478,2.59389324477087,1.08006287447623,0.79312517629427,0,0,0,0,0,3.48595032407229,4.94221445459349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0.278406173895242,0,0.540911356951966,0,14.098700508785,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06579894587209,0,0.332423363800313,0,0,0,0.37950746544837,1.11255605286265,0,0,0,0,0,0,0.611030144933625,1.48260564340311,0.123563938946503,0.730953646538188,0,0,0,0,0,0,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788662062837943,0,0.458320848023367,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0,0,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0.606965604236632,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0.281951753939561,0.322289439867886,0.999411559249289,0,0,0,0,0.458729283404541,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,1.61472274590015,4.7176782864852,0,0,0.202117188958219,0.217716747896961,0,1.21233695426258,0.215166616178029,0,0,0,0,0,0,0.122241444182866,0,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.328402357799783,0.0787107813136792,0,0.383829398097213,0.154816123316076,0,0,0,0,0.710846162437108,0,0,0.601633342410425,0.217010870715852,0.223915474239924,0,0,0,0,0,0.232429036905685,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,3.93419540227666,5.50215067848831,1.85041349099558,2.50779743086017,1.95553359980154,2.8406868344084,1.94826728407911,2.89667187901451,1.76763544484902,0.443067789167242,4.60366568400527,6.78883994546078,3.64166173167659,16.9371041741786,5.52700035571697,9.27369874352168,8.15576097391332,1.87278579662799,1.04535523804977,4.19244567980995,1.53288197440768,2.06176467289578,5.06039384039006,0.95569624297229,3.90650072313851,0,1.20460095262218,2.43174561193395,2.49861453104692,0.710331756132051,1.64225599384209,2.01606743224732,2.94184215361858,3.91025890483557,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0.441463099414651,0,0.343135620597051,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428933980974443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37921532141349,1.50939302401662,1.28343036279748,0.254094624222463,0,1.54657762555539,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.3082884179662,0.647142602455851,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.987884678879706,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,1.52927441428475,1.13929437434833,1.90585420366231,1.64544909234478,2.59389324477087,1.08006287447623,0.79312517629427,0,0,0,0,0,3.48595032407229,4.94221445459349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0.278406173895242,0,0.540911356951966,0,14.098700508785,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.828851746593443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.06579894587209,0,0.332423363800313,0,0,0,0.37950746544837,1.11255605286265,0,0,0,0,0,0,0.611030144933625,1.48260564340311,0.123563938946503,0.730953646538188,0,0,0,0,0,0,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788662062837943,0,0.458320848023367,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0,0.414239055347196,1.48849806543585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.584580926518165,0,0,0,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,0,0,0,0,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0.606965604236632,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0.617393264863557,0,0,0,0,0,0,0,0,0.281951753939561,0.322289439867886,0.999411559249289,0,0,0,0,0.458729283404541,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,1.61472274590015,4.7176782864852,0,0,0.202117188958219,0.217716747896961,0,1.21233695426258,0.215166616178029,0,0,0,0,0,0,0.122241444182866,0,0,0.805095174364105,0 | ||
|short_description=p@chr21:43859686..43859724,+ | |||
}} | }} |
Latest revision as of 18:10, 28 July 2015
Short description: | p@chr21:43859686..43859724, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr21:43859686..43859724, + |
Coexpression cluster: | C2634_acute_CD4_thymus_CD8_Whole_Peripheral_chronic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 9.15e-42 | 25 |
pro-T cell | 9.15e-42 | 25 |
mature alpha-beta T cell | 1.14e-39 | 18 |
alpha-beta T cell | 1.14e-39 | 18 |
immature T cell | 1.14e-39 | 18 |
mature T cell | 1.14e-39 | 18 |
immature alpha-beta T cell | 1.14e-39 | 18 |
lymphoid lineage restricted progenitor cell | 3.78e-25 | 52 |
lymphocyte | 1.40e-24 | 53 |
common lymphoid progenitor | 1.40e-24 | 53 |
CD4-positive, alpha-beta T cell | 3.13e-23 | 6 |
CD8-positive, alpha-beta T cell | 1.07e-21 | 11 |
naive T cell | 4.56e-12 | 3 |
natural killer cell | 1.43e-11 | 3 |
pro-NK cell | 1.43e-11 | 3 |
nongranular leukocyte | 8.90e-10 | 115 |
regulatory T cell | 1.06e-08 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.06e-08 | 2 |
naive regulatory T cell | 1.06e-08 | 2 |
hematopoietic lineage restricted progenitor cell | 4.07e-08 | 120 |
leukocyte | 1.47e-07 | 136 |
hematopoietic cell | 6.91e-07 | 177 |
hematopoietic stem cell | 9.42e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
blood | 7.15e-15 | 15 |
haemolymphatic fluid | 7.15e-15 | 15 |
organism substance | 7.15e-15 | 15 |
thymus | 2.29e-09 | 4 |
hemolymphoid system gland | 2.29e-09 | 4 |
thymic region | 2.29e-09 | 4 |
pharyngeal gland | 2.29e-09 | 4 |
thymus primordium | 2.29e-09 | 4 |