FFCP PHASE1:Hg19::chr5:142783175..142783297,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:142783175..142783297,- to FFCP PHASE1:Hg19::chr5:142783175..142783297,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2908 | |EntrezGene=2908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7978 | |HGNC=7978 | ||
|TSSclassifier=strong | |||
|UniProt=F8W959,P04150,F1D8N4,E5KQF5,E5KQF6 | |UniProt=F8W959,P04150,F1D8N4,E5KQF5,E5KQF6 | ||
|association_with_transcript=0bp_to_ENST00000231509,ENST00000361001,ENST00000394464,NM_000176,NM_001020825,NM_001024094,NM_001204258,NM_001204259,NM_001204260,NM_001204261,NM_001204262,NM_001204263,NM_001204264,NM_001204265,uc003lmy.2,uc003lmz.2,uc003lna.2_5end | |||
|cluster_id=chr5:142783175..142783297,- | |||
|description=CAGE_peak_1_at_NR3C1_5end | |||
|id=chr5:142783175..142783297,- | |||
|ontology_enrichment_celltype=CL:0000766!9.50e-18!76;CL:0002057!4.00e-17!42;CL:0000860!4.14e-16!45;CL:0000134!1.02e-15!358;CL:0000738!1.14e-15!140;CL:0000839!4.56e-15!70;CL:0002320!6.96e-15!365;CL:0000557!1.20e-14!71;CL:0002031!1.27e-13!124;CL:0002194!1.02e-12!63;CL:0000576!1.02e-12!63;CL:0000040!1.02e-12!63;CL:0000559!1.02e-12!63;CL:0002009!1.22e-12!65;CL:0002087!1.02e-11!119;CL:0000048!2.70e-10!430;CL:0000723!1.44e-09!436;CL:0000219!2.84e-09!390;CL:0000037!1.24e-08!172;CL:0000566!1.24e-08!172;CL:0000034!3.36e-08!444;CL:0000988!8.46e-08!182;CL:0002032!9.15e-08!165;CL:0000837!9.15e-08!165;CL:0000763!3.02e-07!112;CL:0000049!3.02e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.15e-14;33!CL:0002057;1.15e-14;33!CL:0000576;3.19e-10;48!CL:0000473;4.49e-10;39!CL:0000234;4.49e-10;39!CL:0000766;3.39e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.52e-18,72;CL:0000860,3.99e-17,42;CL:0002057,3.99e-17,42;CL:0000134,3.98e-16,354;CL:0000738,1.31e-15,136;CL:0002320,2.84e-15,361;CL:0000839,2.91e-15,66;CL:0000557,8.03e-15,67;CL:0000473,2.95e-14,48;CL:0000234,2.95e-14,48;CL:0002031,1.43e-13,120;CL:0002194,6.95e-13,59;CL:0000576,6.95e-13,59;CL:0000040,6.95e-13,59;CL:0000559,6.95e-13,59;CL:0002009,8.65e-13,61;CL:0002087,1.19e-11,115;CL:0000048,1.30e-10,427;CL:0000723,7.19e-10,433;CL:0000219,1.56e-09,386;CL:0000037,1.74e-08,168;CL:0000034,1.80e-08,441;CL:0000988,5.88e-08,177;CL:0002032,1.27e-07,161;CL:0000837,1.27e-07,161;CL:0000763,3.97e-07,108;CL:0000049,3.97e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.15e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.14e-17!102;UBERON:0003061!1.14e-17!102;UBERON:0002384!8.56e-15!375;UBERON:0002193!2.87e-13!112;UBERON:0002371!4.70e-13!80;UBERON:0004765!1.23e-11!101;UBERON:0001434!1.23e-11!101;UBERON:0001474!1.27e-11!86;UBERON:0002204!4.00e-09!167;UBERON:0002405!2.95e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.59e-18,98;UBERON:0003061,9.59e-18,98;UBERON:0002384,3.55e-15,371;UBERON:0002193,3.09e-13,108;UBERON:0002371,3.98e-13,76;UBERON:0001474,1.23e-11,82;UBERON:0001434,3.21e-11,100;UBERON:0004765,3.38e-10,90;UBERON:0002405,5.12e-10,93;UBERON:0002204,8.20e-09,167;UBERON:0003081,1.48e-08,203 | |||
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| ||
|short_description=p1@NR3C1 | |||
}} | }} |
Latest revision as of 07:41, 25 September 2015
Short description: | p1@NR3C1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NR3C1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000231509, ENST00000361001, ENST00000394464, NM_000176, NM_001020825, NM_001024094, NM_001204258, NM_001204259, NM_001204260, NM_001204261, NM_001204262, NM_001204263, NM_001204264, NM_001204265, uc003lmy.2, uc003lmz.2, uc003lna.2_5end |
EntrezGene: | NR3C1 |
HGNC: | 7978 |
UniProt: | F8W959P04150F1D8N4E5KQF5E5KQF6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.52e-18 | 72 |
classical monocyte | 3.99e-17 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.99e-17 | 42 |
mesenchymal cell | 3.98e-16 | 354 |
leukocyte | 1.31e-15 | 136 |
connective tissue cell | 2.84e-15 | 361 |
myeloid lineage restricted progenitor cell | 2.91e-15 | 66 |
granulocyte monocyte progenitor cell | 8.03e-15 | 67 |
defensive cell | 2.95e-14 | 48 |
phagocyte | 2.95e-14 | 48 |
hematopoietic lineage restricted progenitor cell | 1.43e-13 | 120 |
monopoietic cell | 6.95e-13 | 59 |
monocyte | 6.95e-13 | 59 |
monoblast | 6.95e-13 | 59 |
promonocyte | 6.95e-13 | 59 |
macrophage dendritic cell progenitor | 8.65e-13 | 61 |
nongranular leukocyte | 1.19e-11 | 115 |
multi fate stem cell | 1.30e-10 | 427 |
somatic stem cell | 7.19e-10 | 433 |
motile cell | 1.56e-09 | 386 |
hematopoietic stem cell | 1.74e-08 | 168 |
stem cell | 1.80e-08 | 441 |
hematopoietic cell | 5.88e-08 | 177 |
hematopoietic oligopotent progenitor cell | 1.27e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.27e-07 | 161 |
myeloid cell | 3.97e-07 | 108 |
common myeloid progenitor | 3.97e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.59e-18 | 98 |
blood island | 9.59e-18 | 98 |
connective tissue | 3.55e-15 | 371 |
hemolymphoid system | 3.09e-13 | 108 |
bone marrow | 3.98e-13 | 76 |
bone element | 1.23e-11 | 82 |
skeletal system | 3.21e-11 | 100 |
skeletal element | 3.38e-10 | 90 |
immune system | 5.12e-10 | 93 |
musculoskeletal system | 8.20e-09 | 167 |
lateral plate mesoderm | 1.48e-08 | 203 |