FFCP PHASE1:Hg19::chr5:149792306..149792326,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:149792306..149792326,- to FFCP PHASE1:Hg19::chr5:149792306..149792326,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=972 | |EntrezGene=972 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1697 | |HGNC=1697 | ||
|TSSclassifier=strong | |||
|UniProt=P04233,E7EQJ3,E7ER71,E7ESL3 | |UniProt=P04233,E7EQJ3,E7ER71,E7ESL3 | ||
|association_with_transcript=0bp_to_ENST00000009530,ENST00000517752,ENST00000522153,ENST00000522246,ENST00000523813,ENST00000523836,ENST00000524315_5end | |||
|cluster_id=chr5:149792306..149792326,- | |||
|coexpression_cluster_id=C187 | |||
|description=CAGE_peak_1_at_CD74_5end | |||
|id=chr5:149792306..149792326,- | |||
|ontology_enrichment_celltype=CL:0000738!2.78e-49!140;CL:0002087!2.97e-43!119;CL:0000037!5.82e-43!172;CL:0000566!5.82e-43!172;CL:0000988!1.36e-41!182;CL:0002031!8.92e-41!124;CL:0002032!1.38e-40!165;CL:0000837!1.38e-40!165;CL:0000766!1.06e-27!76;CL:0002009!1.43e-27!65;CL:0000557!9.13e-27!71;CL:0002194!3.29e-26!63;CL:0000576!3.29e-26!63;CL:0000040!3.29e-26!63;CL:0000559!3.29e-26!63;CL:0002057!2.51e-24!42;CL:0000839!4.89e-24!70;CL:0000763!5.53e-24!112;CL:0000049!5.53e-24!112;CL:0000860!6.84e-21!45;CL:0000542!4.41e-15!53;CL:0000051!4.41e-15!53;CL:0000838!1.12e-14!52;CL:0000945!5.11e-14!24;CL:0000826!5.11e-14!24;CL:0000236!9.30e-10!14;CL:0000451!6.98e-09!10;CL:0000990!1.24e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.65e-18;33!CL:0002057;2.65e-18;33!CL:0000473;4.16e-18;39!CL:0000234;4.16e-18;39!CL:0000576;8.33e-17;48!CL:0000945;3.53e-14;24!CL:0002087;1.87e-13;104!CL:0000766;2.46e-13;69!CL:0000738;5.97e-12;136!CL:0000542;1.07e-09;53!CL:0000236;2.13e-09;13!CL:0000451;5.62e-09;10!CL:0000988;2.74e-08;177!CL:0000763;5.08e-08;100!CL:0000990;1.04e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.90e-54,136;CL:0002087,6.60e-48,115;CL:0000037,2.68e-47,168;CL:0000988,3.13e-46,177;CL:0002031,3.96e-45,120;CL:0002032,9.44e-45,161;CL:0000837,9.44e-45,161;CL:0002009,3.75e-32,61;CL:0000766,7.82e-32,72;CL:0000557,5.54e-31,67;CL:0002194,1.02e-30,59;CL:0000576,1.02e-30,59;CL:0000040,1.02e-30,59;CL:0000559,1.02e-30,59;CL:0000839,5.69e-28,66;CL:0000473,6.08e-28,48;CL:0000234,6.08e-28,48;CL:0000763,2.48e-27,108;CL:0000049,2.48e-27,108;CL:0000860,1.30e-24,42;CL:0002057,1.30e-24,42;CL:0000542,1.52e-15,53;CL:0000051,1.52e-15,53;CL:0000838,3.92e-15,52;CL:0000945,3.57e-14,24;CL:0000826,3.57e-14,24;CL:0000236,7.34e-10,14;CL:0000451,5.64e-09,10;CL:0000990,1.04e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;6.16e-18;42!CL:0000051;1.07e-09;53!CL:0000049;4.23e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.01e-33!102;UBERON:0003061!2.01e-33!102;UBERON:0002193!3.07e-31!112;UBERON:0007023!2.29e-29!115;UBERON:0002371!3.50e-24!80;UBERON:0002405!6.72e-23!115;UBERON:0001474!4.49e-19!86;UBERON:0004765!3.13e-14!101;UBERON:0001434!3.13e-14!101;UBERON:0001049!1.58e-09!57;UBERON:0005068!1.58e-09!57;UBERON:0006241!1.58e-09!57;UBERON:0007135!1.58e-09!57;UBERON:0003081!1.33e-07!216;UBERON:0000178!1.96e-07!15;UBERON:0000179!1.96e-07!15;UBERON:0000463!1.96e-07!15;UBERON:0002616!2.67e-07!59;UBERON:0003080!3.93e-07!42;UBERON:0002780!6.51e-07!41;UBERON:0001890!6.51e-07!41;UBERON:0006240!6.51e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;3.78e-08;114!UBERON:0000178;1.65e-07;15!UBERON:0000179;1.65e-07;15!UBERON:0000463;1.65e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.44e-37,98;UBERON:0003061,1.44e-37,98;UBERON:0002193,5.73e-35,108;UBERON:0007023,1.88e-29,114;UBERON:0002405,2.95e-28,93;UBERON:0002371,5.06e-28,76;UBERON:0001474,1.54e-22,82;UBERON:0004765,1.21e-19,90;UBERON:0001434,5.88e-16,100;UBERON:0001049,2.12e-09,56;UBERON:0005068,2.12e-09,56;UBERON:0006241,2.12e-09,56;UBERON:0007135,2.12e-09,56;UBERON:0000073,1.03e-08,53;UBERON:0002616,1.03e-08,53;UBERON:0003081,1.70e-08,203;UBERON:0000178,1.65e-07,15;UBERON:0000179,1.65e-07,15;UBERON:0000463,1.65e-07,15;UBERON:0002780,5.57e-07,41;UBERON:0001890,5.57e-07,41;UBERON:0003080,5.57e-07,41;UBERON:0006240,5.57e-07,41 | |||
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| ||
|short_description=p1@CD74 | |||
}} | }} |
Latest revision as of 04:50, 16 September 2015
Short description: | p1@CD74 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CD74_5end |
Coexpression cluster: | C187_migratory_immature_Dendritic_CD19_CD14_Monocytederived_Macrophage |
Association with transcript: | 0bp_to_ENST00000009530, ENST00000517752, ENST00000522153, ENST00000522246, ENST00000523813, ENST00000523836, ENST00000524315_5end |
EntrezGene: | CD74 |
HGNC: | 1697 |
UniProt: | P04233E7EQJ3E7ER71E7ESL3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.90e-54 | 136 |
nongranular leukocyte | 6.60e-48 | 115 |
hematopoietic stem cell | 2.68e-47 | 168 |
hematopoietic cell | 3.13e-46 | 177 |
hematopoietic lineage restricted progenitor cell | 3.96e-45 | 120 |
hematopoietic oligopotent progenitor cell | 9.44e-45 | 161 |
hematopoietic multipotent progenitor cell | 9.44e-45 | 161 |
macrophage dendritic cell progenitor | 3.75e-32 | 61 |
myeloid leukocyte | 7.82e-32 | 72 |
granulocyte monocyte progenitor cell | 5.54e-31 | 67 |
monopoietic cell | 1.02e-30 | 59 |
monocyte | 1.02e-30 | 59 |
monoblast | 1.02e-30 | 59 |
promonocyte | 1.02e-30 | 59 |
myeloid lineage restricted progenitor cell | 5.69e-28 | 66 |
defensive cell | 6.08e-28 | 48 |
phagocyte | 6.08e-28 | 48 |
myeloid cell | 2.48e-27 | 108 |
common myeloid progenitor | 2.48e-27 | 108 |
classical monocyte | 1.30e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.30e-24 | 42 |
lymphocyte | 1.52e-15 | 53 |
common lymphoid progenitor | 1.52e-15 | 53 |
lymphoid lineage restricted progenitor cell | 3.92e-15 | 52 |
lymphocyte of B lineage | 3.57e-14 | 24 |
pro-B cell | 3.57e-14 | 24 |
B cell | 7.34e-10 | 14 |
dendritic cell | 5.64e-09 | 10 |
conventional dendritic cell | 1.04e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.44e-37 | 98 |
blood island | 1.44e-37 | 98 |
hemolymphoid system | 5.73e-35 | 108 |
adult organism | 1.88e-29 | 114 |
immune system | 2.95e-28 | 93 |
bone marrow | 5.06e-28 | 76 |
bone element | 1.54e-22 | 82 |
skeletal element | 1.21e-19 | 90 |
skeletal system | 5.88e-16 | 100 |
neural tube | 2.12e-09 | 56 |
neural rod | 2.12e-09 | 56 |
future spinal cord | 2.12e-09 | 56 |
neural keel | 2.12e-09 | 56 |
regional part of nervous system | 1.03e-08 | 53 |
regional part of brain | 1.03e-08 | 53 |
lateral plate mesoderm | 1.70e-08 | 203 |
blood | 1.65e-07 | 15 |
haemolymphatic fluid | 1.65e-07 | 15 |
organism substance | 1.65e-07 | 15 |
regional part of forebrain | 5.57e-07 | 41 |
forebrain | 5.57e-07 | 41 |
anterior neural tube | 5.57e-07 | 41 |
future forebrain | 5.57e-07 | 41 |