FFCP PHASE1:Hg19::chr5:82373353..82373375,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:82373353..82373375,+ to FFCP PHASE1:Hg19::chr5:82373353..82373375,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7518 | |EntrezGene=7518 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12831 | |HGNC=12831 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000542685_5end | |||
|cluster_id=chr5:82373353..82373375,+ | |||
|description=CAGE_peak_2_at_XRCC4_5end | |||
|id=chr5:82373353..82373375,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.85e-35!172;CL:0000566!4.85e-35!172;CL:0000988!6.66e-33!182;CL:0002032!7.92e-33!165;CL:0000837!7.92e-33!165;CL:0000738!2.31e-30!140;CL:0000763!7.55e-28!112;CL:0000049!7.55e-28!112;CL:0000766!3.85e-25!76;CL:0002087!2.60e-24!119;CL:0002031!9.75e-23!124;CL:0000557!6.83e-21!71;CL:0002194!5.23e-20!63;CL:0000576!5.23e-20!63;CL:0000040!5.23e-20!63;CL:0000559!5.23e-20!63;CL:0000839!1.92e-19!70;CL:0002009!2.73e-19!65;CL:0002057!3.30e-18!42;CL:0000860!7.23e-16!45;CL:0000134!8.89e-12!358;CL:0002320!4.44e-10!365;CL:0000219!3.32e-09!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.16e-14;33!CL:0002057;1.16e-14;33!CL:0000576;3.01e-14;48!CL:0000473;2.11e-13;39!CL:0000234;2.11e-13;39!CL:0000766;5.26e-12;69!CL:0000763;2.18e-10;100!CL:0002087;7.92e-09;104!CL:0000738;2.12e-08;136!CL:0000988;3.85e-08;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.18e-40,168;CL:0000988,8.16e-39,177;CL:0002032,1.11e-37,161;CL:0000837,1.11e-37,161;CL:0000738,2.52e-34,136;CL:0000763,2.14e-33,108;CL:0000049,2.14e-33,108;CL:0000766,7.60e-30,72;CL:0002087,1.84e-27,115;CL:0002031,4.67e-26,120;CL:0000557,2.42e-25,67;CL:0002194,3.14e-24,59;CL:0000576,3.14e-24,59;CL:0000040,3.14e-24,59;CL:0000559,3.14e-24,59;CL:0002009,1.23e-23,61;CL:0000839,1.54e-23,66;CL:0000473,6.70e-21,48;CL:0000234,6.70e-21,48;CL:0000860,1.01e-19,42;CL:0002057,1.01e-19,42;CL:0000134,4.05e-14,354;CL:0002320,1.85e-12,361;CL:0000219,7.51e-11,386;CL:0000048,6.97e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;4.81e-14;42!CL:0000049;6.04e-10;108 | |||
|ontology_enrichment_disease=DOID:2531!2.63e-09!51;DOID:0060083!2.63e-09!51;DOID:1240!6.68e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:8692;8.20e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,3.44e-10,51;DOID:0060083,3.44e-10,51;DOID:1240,1.38e-07,39;DOID:8692,3.36e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.11e-22!102;UBERON:0003061!1.11e-22!102;UBERON:0002193!3.58e-21!112;UBERON:0002371!4.28e-17!80;UBERON:0001474!3.41e-15!86;UBERON:0004765!1.25e-12!101;UBERON:0001434!1.25e-12!101;UBERON:0002405!1.63e-11!115;UBERON:0002384!6.93e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.31e-26,98;UBERON:0003061,1.31e-26,98;UBERON:0002193,7.01e-25,108;UBERON:0002371,7.35e-21,76;UBERON:0002405,6.19e-20,93;UBERON:0001474,1.04e-17,82;UBERON:0004765,3.35e-15,90;UBERON:0001434,7.36e-13,100;UBERON:0002384,1.63e-11,371;UBERON:0003081,2.50e-07,203 | |||
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| ||
|short_description=p2@XRCC4 | |||
}} | }} |
Latest revision as of 00:25, 19 September 2015
Short description: | p2@XRCC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_XRCC4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000542685_5end |
EntrezGene: | XRCC4 |
HGNC: | 12831 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.18e-40 | 168 |
hematopoietic cell | 8.16e-39 | 177 |
hematopoietic oligopotent progenitor cell | 1.11e-37 | 161 |
hematopoietic multipotent progenitor cell | 1.11e-37 | 161 |
leukocyte | 2.52e-34 | 136 |
myeloid cell | 2.14e-33 | 108 |
common myeloid progenitor | 2.14e-33 | 108 |
myeloid leukocyte | 7.60e-30 | 72 |
nongranular leukocyte | 1.84e-27 | 115 |
hematopoietic lineage restricted progenitor cell | 4.67e-26 | 120 |
granulocyte monocyte progenitor cell | 2.42e-25 | 67 |
monopoietic cell | 3.14e-24 | 59 |
monocyte | 3.14e-24 | 59 |
monoblast | 3.14e-24 | 59 |
promonocyte | 3.14e-24 | 59 |
macrophage dendritic cell progenitor | 1.23e-23 | 61 |
myeloid lineage restricted progenitor cell | 1.54e-23 | 66 |
defensive cell | 6.70e-21 | 48 |
phagocyte | 6.70e-21 | 48 |
classical monocyte | 1.01e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.01e-19 | 42 |
mesenchymal cell | 4.05e-14 | 354 |
connective tissue cell | 1.85e-12 | 361 |
motile cell | 7.51e-11 | 386 |
multi fate stem cell | 6.97e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.31e-26 | 98 |
blood island | 1.31e-26 | 98 |
hemolymphoid system | 7.01e-25 | 108 |
bone marrow | 7.35e-21 | 76 |
immune system | 6.19e-20 | 93 |
bone element | 1.04e-17 | 82 |
skeletal element | 3.35e-15 | 90 |
skeletal system | 7.36e-13 | 100 |
connective tissue | 1.63e-11 | 371 |
lateral plate mesoderm | 2.50e-07 | 203 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 3.44e-10 | 51 |
immune system cancer | 3.44e-10 | 51 |
leukemia | 1.38e-07 | 39 |
myeloid leukemia | 3.36e-07 | 31 |