FFCP PHASE1:Mm9::chr11:60513186..60513212,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr11:60513186..60513212,+ to FFCP PHASE1:Mm9::chr11:60513186..60513212,+: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=16897 | |EntrezGene=16897 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=425 | |||
|TSSclassifier=NA | |||
|UniProt=Q80Y17 | |UniProt=Q80Y17 | ||
|association_with_transcript=0bp_to_NM_001159404,NM_001159405,NM_008502,uc007jge.2,uc007jgf.2,uc007jgg.2_5end | |||
|cluster_id=chr11:60513186..60513212,+ | |||
|description=CAGE_peak_2_at_Llgl1_5end | |||
|id=chr11:60513186..60513212,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.30e-14!43;CL:0000221!3.06e-14!44;CL:0000133!3.06e-14!44;CL:0000055!4.20e-13!50;CL:0000540!4.47e-12!33;CL:0000047!4.47e-12!33;CL:0000031!4.47e-12!33;CL:0000404!4.47e-12!33;CL:0000393!1.68e-11!39;CL:0000211!1.68e-11!39;CL:0000117!7.67e-11!23;CL:0000337!7.67e-11!23;CL:0002321!9.71e-09!70;CL:0000220!9.71e-09!70;CL:0000548!2.50e-08!115;CL:0000004!2.50e-08!115;CL:0000255!2.50e-08!115;CL:0000144!2.07e-07!121;CL:0000012!2.07e-07!121;CL:0002371!3.91e-07!118;CL:0000034!6.23e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,8.75e-15,43;CL:0000221,2.09e-14,44;CL:0000133,2.09e-14,44;CL:0000540,3.26e-12,33;CL:0000047,3.26e-12,33;CL:0000031,3.26e-12,33;CL:0000404,3.26e-12,33;CL:0000393,1.25e-11,39;CL:0000211,1.25e-11,39;CL:0000117,5.80e-11,23;CL:0000337,5.80e-11,23;CL:0002321,4.00e-09,70;CL:0000034,1.10e-07,97;CL:0000723,3.86e-07,91;CL:0000048,3.86e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!8.82e-09!94;UBERON:0001017!1.14e-08!73;UBERON:0005743!1.14e-08!73;UBERON:0000073!1.22e-08!75;UBERON:0001016!1.22e-08!75;UBERON:0007811!1.03e-07!86;UBERON:0004121!1.51e-07!102;UBERON:0000924!1.51e-07!102;UBERON:0006601!1.51e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.35e-08,73;UBERON:0001016,2.50e-08,75;UBERON:0004121,6.81e-08,95;UBERON:0000924,6.81e-08,95;UBERON:0006601,6.81e-08,95;UBERON:0000153,6.41e-07,43 | |||
|phase1_expression=3.36312578920067,0.348975407639361,1.81999695755814,1.20985684522732,1.50268718983904,1.34303417529512,1.86890112476421,2.7115897922731,7.03943610758334,5.38348410540585,4.79410311031414,3.66951931378547,2.9104124088305,2.79745287740792,1.66554880907831,1.21485160433896,2.09868563438444,1.57731082679119,2.33094537129756,3.81950686618227,1.87095238332354,1.09220046320974,1.30599894569468,1.43993180514066,1.83527424853736,2.29692785646008,0.430761996159075,1.07735616342945,0.190023419456374,0,1.10865255327652,0,1.84519436275371,0,4.04392267651784,0.997407872150954,1.22501613757421,0.418531630736908,0.7813353445238,0,0.588231488031014,2.73218193983378,0.971020706062307,1.51076181570693,2.53442328048786,3.30384153891027,6.25913075478431,2.8343270329458,2.41654801007919,2.52758868796568,2.37976916763116,7.18762821824858,2.34895648480831,3.62681071005672,2.01656279485478,1.80081605225163,1.14613375975503,3.09403255366465,6.27181028664753,6.34789175126439,7.60597684207415,5.08266798103698,5.33576877666684,2.2497492932035,3.9554654502679,2.1314403448383,9.28760342607055,7.30014780110954,13.0648911508682,11.2054928815303,9.25429829946081,5.42736870367227,5.30084498283872,7.10446635446733,9.00947427571422,8.27296907949019,3.30347642998166,2.17068474744819,2.30409799884365,5.67111037239834,4.7573574673253,8.33461392890816,2.79182999001381,3.93933827022176,1.68078072554491,4.71405736757868,2.84743361598206,3.91438836233131,2.80186915332781,1.28471652181535,1.73918693221007,0,0,0.539703191637817,0,0,0.842666520790511,1.1930122580464,1.03914401841148,2.12003744706204,1.54927761754349,1.28326477414318,2.54805239706646,7.11066703153331,2.16491041011214,1.77351905832569,3.53867111510348,0.45673551887624,2.07150306917737,1.1875371125186,3.64319186208885,2.43572382649713,0.461230994512117,1.95939432718409,1.29347577849275,1.50799909595611,0.494389935468748,0.722996784599558,0,0.970601099684455,1.10420759230197,0,0,1.46390398505774,1.25668024088073,1.02182822083437,1.91704199209472,2.39961092397363,2.03312363316904,0.898743836428936,2.74500361691176,2.1361239859187,0.521472960576829,1.02286182932132,0.83115217823824,1.46017136760982,2.54598409625791,1.11966273549084,0.758168275301024,0.841767423545896,7.026503919986,6.66716102857071,4.32149111532838,3.31550599238573,3.53789795586905,3.71529788826064,6.1843138209421,0.258703370739016,10.7783996466421,5.29497024469894,3.16712023495108,4.60311038097907,1.11218899690239,1.39300866608867,2.05782136407943,7.76233640592123,0,0.257347907114715,0.568326998791185,5.17814431338755,3.51789089971644,2.16074473753218,3.07768156260773,1.96764231747404,1.85120535464854,1.86027155800326,1.87791380979733,2.33530684734339,0.658239399653922,0.820837320395476,1.62137619091711,1.02339991197733,1.09775057645525,0.805238512562231,1.26173969138476,1.74937841044784,0.991256348951394,1.32225283331772,5.97207101498655,4.64473343720877,2.83508414908605,1.4117846723634,1.11189021922435,0.760902504450237,0.474529061544512,0.494096864172033,0.502670417600539,1.39269530428806,0.779856348476481,1.79763881730844,0.648414149624083,0.398282546508734,5.31070122668629,3.88444942873078,2.25415471346161,3.25842124552503,1.93952487167626,1.8936671370386,1.39120381673366,1.18088118383682,0.941992367048249,0.863780147452604,0.592905254174298,2.00214126859313,1.76903095601883,0.674586337154561,0,0.72353147925725,0.763877555344259,1.15078454980324,0.486405680325106,0.549122826376163,1.43768206527355,0.372140947668503,0.624075346229121,0.505157755894224,0.717589654087649,0,0.739012760666419,3.60033682363921,4.88894929326078,2.54617628662782,1.87752198630802,3.51763140627813,1.42826184531608,2.73187107000918,3.15270288212382,2.21464689648775,2.23236676120482,1.80249646187312,1.38147985492716,1.01254341007058,3.01582567878545,0.54390568381871,0.491764273019036,2.20749397043786,2.24770825982909,2.93029216480508,1.63934945376675,1.00988370881749,5.36363973007636,1.95219372148319,3.23135096599198,2.38968797952552,1.78238939265915,2.54768877709949,2.02405350837447,2.92255857911312,5.13874111330481,0.963963949265421,1.70328102249922,3.5613120733451,1.95464351224291,1.64970122972535,1.32745138339963,1.94224508923985,2.72091201268276,0.565815239267694,1.47650946440386,1.22974059177571,1.29214146584111,1.45413491791002,0.356497378384721,0.632073515871632,1.05418608574999,1.03135543248187,1.02131881726136,4.14140516272013,5.95049945400671,3.21505552547388,3.19212420556092,4.45922044005176,3.78462747384878,3.04464949114599,0.704015124191131,2.1183207086382,0.220528398054962,1.48397627647332,1.29171541356724,1.74907482291652,1.55184047204077,2.79039529566604,0.874442509889552,3.15223013417866,1.02522528478712,2.68302928352189,1.85194527369712,0.941842285023455,0.956859594047176,1.14389086603261,2.37969801991397,2.51912614182584,1.93479963326193,0,5.06137589729817,3.25311147402958,2.05210147561422,1.04544148007234,1.52853794622324,1.07891477107857,1.23980183588004,0.26175594198403,0.518459893167171,1.24267862617385,1.69107881605257,4.33597983527538,2.97825282822776,4.86127970860119,4.26227417476513,2.02747350588934,1.99507305697782,2.0832701575032,4.61381115473128,2.17425708743405,1.72818003754719,2.21207784439725,2.63542779877213,2.36235201479103,2.7283372825337,3.04345382634718,2.78153896693771,3.846254384639,2.06765338044408,2.72609414859999,1.905170166375,1.91569751759997,3.02119430293232,3.46362629905186,3.27255326108393,0.453460767230423,3.32978930061097,2.33256027184637,1.67884616364078,1.35232715822533,0.563047426353546,1.28206136987086,2.14368379079066,0.501572104035363,1.6942555278512,1.84130094602871,1.14579102687879,1.54667864109319,0.685082519770642,0,0.675022500231806,0.900642406448441,0.906284817968409,0.51776031175182,7.5764763736449,5.98537310101547,5.12200817262403,1.94485373654635,2.93458427679175,1.83843508450014,1.11123363900808,1.85431551515005,0.962757628775446,1.51618327058278,1.01391719956096,1.88626341386076,1.96647165686753,1.72867911493147,1.83793500657962,0.952587382566147,1.27472758539341,1.54327376370964,2.47251540481984,2.35518272215036,1.37147700954166,1.4198064492747,2.62279808942053,1.74415699958794,1.2234219453993,1.01537529470012,0.548783918618318,0.526139422875686,2.03706170768793,1.12228454331548,1.66089025373844,2.26560309463796,0.818462086339379,2.47898945897546,0.964533054905707,1.99848462350357,1.16965804222704,0.644613162144895,1.53030665655075,1.10295709559758,0.695603506861264 | |phase1_expression=3.36312578920067,0.348975407639361,1.81999695755814,1.20985684522732,1.50268718983904,1.34303417529512,1.86890112476421,2.7115897922731,7.03943610758334,5.38348410540585,4.79410311031414,3.66951931378547,2.9104124088305,2.79745287740792,1.66554880907831,1.21485160433896,2.09868563438444,1.57731082679119,2.33094537129756,3.81950686618227,1.87095238332354,1.09220046320974,1.30599894569468,1.43993180514066,1.83527424853736,2.29692785646008,0.430761996159075,1.07735616342945,0.190023419456374,0,1.10865255327652,0,1.84519436275371,0,4.04392267651784,0.997407872150954,1.22501613757421,0.418531630736908,0.7813353445238,0,0.588231488031014,2.73218193983378,0.971020706062307,1.51076181570693,2.53442328048786,3.30384153891027,6.25913075478431,2.8343270329458,2.41654801007919,2.52758868796568,2.37976916763116,7.18762821824858,2.34895648480831,3.62681071005672,2.01656279485478,1.80081605225163,1.14613375975503,3.09403255366465,6.27181028664753,6.34789175126439,7.60597684207415,5.08266798103698,5.33576877666684,2.2497492932035,3.9554654502679,2.1314403448383,9.28760342607055,7.30014780110954,13.0648911508682,11.2054928815303,9.25429829946081,5.42736870367227,5.30084498283872,7.10446635446733,9.00947427571422,8.27296907949019,3.30347642998166,2.17068474744819,2.30409799884365,5.67111037239834,4.7573574673253,8.33461392890816,2.79182999001381,3.93933827022176,1.68078072554491,4.71405736757868,2.84743361598206,3.91438836233131,2.80186915332781,1.28471652181535,1.73918693221007,0,0,0.539703191637817,0,0,0.842666520790511,1.1930122580464,1.03914401841148,2.12003744706204,1.54927761754349,1.28326477414318,2.54805239706646,7.11066703153331,2.16491041011214,1.77351905832569,3.53867111510348,0.45673551887624,2.07150306917737,1.1875371125186,3.64319186208885,2.43572382649713,0.461230994512117,1.95939432718409,1.29347577849275,1.50799909595611,0.494389935468748,0.722996784599558,0,0.970601099684455,1.10420759230197,0,0,1.46390398505774,1.25668024088073,1.02182822083437,1.91704199209472,2.39961092397363,2.03312363316904,0.898743836428936,2.74500361691176,2.1361239859187,0.521472960576829,1.02286182932132,0.83115217823824,1.46017136760982,2.54598409625791,1.11966273549084,0.758168275301024,0.841767423545896,7.026503919986,6.66716102857071,4.32149111532838,3.31550599238573,3.53789795586905,3.71529788826064,6.1843138209421,0.258703370739016,10.7783996466421,5.29497024469894,3.16712023495108,4.60311038097907,1.11218899690239,1.39300866608867,2.05782136407943,7.76233640592123,0,0.257347907114715,0.568326998791185,5.17814431338755,3.51789089971644,2.16074473753218,3.07768156260773,1.96764231747404,1.85120535464854,1.86027155800326,1.87791380979733,2.33530684734339,0.658239399653922,0.820837320395476,1.62137619091711,1.02339991197733,1.09775057645525,0.805238512562231,1.26173969138476,1.74937841044784,0.991256348951394,1.32225283331772,5.97207101498655,4.64473343720877,2.83508414908605,1.4117846723634,1.11189021922435,0.760902504450237,0.474529061544512,0.494096864172033,0.502670417600539,1.39269530428806,0.779856348476481,1.79763881730844,0.648414149624083,0.398282546508734,5.31070122668629,3.88444942873078,2.25415471346161,3.25842124552503,1.93952487167626,1.8936671370386,1.39120381673366,1.18088118383682,0.941992367048249,0.863780147452604,0.592905254174298,2.00214126859313,1.76903095601883,0.674586337154561,0,0.72353147925725,0.763877555344259,1.15078454980324,0.486405680325106,0.549122826376163,1.43768206527355,0.372140947668503,0.624075346229121,0.505157755894224,0.717589654087649,0,0.739012760666419,3.60033682363921,4.88894929326078,2.54617628662782,1.87752198630802,3.51763140627813,1.42826184531608,2.73187107000918,3.15270288212382,2.21464689648775,2.23236676120482,1.80249646187312,1.38147985492716,1.01254341007058,3.01582567878545,0.54390568381871,0.491764273019036,2.20749397043786,2.24770825982909,2.93029216480508,1.63934945376675,1.00988370881749,5.36363973007636,1.95219372148319,3.23135096599198,2.38968797952552,1.78238939265915,2.54768877709949,2.02405350837447,2.92255857911312,5.13874111330481,0.963963949265421,1.70328102249922,3.5613120733451,1.95464351224291,1.64970122972535,1.32745138339963,1.94224508923985,2.72091201268276,0.565815239267694,1.47650946440386,1.22974059177571,1.29214146584111,1.45413491791002,0.356497378384721,0.632073515871632,1.05418608574999,1.03135543248187,1.02131881726136,4.14140516272013,5.95049945400671,3.21505552547388,3.19212420556092,4.45922044005176,3.78462747384878,3.04464949114599,0.704015124191131,2.1183207086382,0.220528398054962,1.48397627647332,1.29171541356724,1.74907482291652,1.55184047204077,2.79039529566604,0.874442509889552,3.15223013417866,1.02522528478712,2.68302928352189,1.85194527369712,0.941842285023455,0.956859594047176,1.14389086603261,2.37969801991397,2.51912614182584,1.93479963326193,0,5.06137589729817,3.25311147402958,2.05210147561422,1.04544148007234,1.52853794622324,1.07891477107857,1.23980183588004,0.26175594198403,0.518459893167171,1.24267862617385,1.69107881605257,4.33597983527538,2.97825282822776,4.86127970860119,4.26227417476513,2.02747350588934,1.99507305697782,2.0832701575032,4.61381115473128,2.17425708743405,1.72818003754719,2.21207784439725,2.63542779877213,2.36235201479103,2.7283372825337,3.04345382634718,2.78153896693771,3.846254384639,2.06765338044408,2.72609414859999,1.905170166375,1.91569751759997,3.02119430293232,3.46362629905186,3.27255326108393,0.453460767230423,3.32978930061097,2.33256027184637,1.67884616364078,1.35232715822533,0.563047426353546,1.28206136987086,2.14368379079066,0.501572104035363,1.6942555278512,1.84130094602871,1.14579102687879,1.54667864109319,0.685082519770642,0,0.675022500231806,0.900642406448441,0.906284817968409,0.51776031175182,7.5764763736449,5.98537310101547,5.12200817262403,1.94485373654635,2.93458427679175,1.83843508450014,1.11123363900808,1.85431551515005,0.962757628775446,1.51618327058278,1.01391719956096,1.88626341386076,1.96647165686753,1.72867911493147,1.83793500657962,0.952587382566147,1.27472758539341,1.54327376370964,2.47251540481984,2.35518272215036,1.37147700954166,1.4198064492747,2.62279808942053,1.74415699958794,1.2234219453993,1.01537529470012,0.548783918618318,0.526139422875686,2.03706170768793,1.12228454331548,1.66089025373844,2.26560309463796,0.818462086339379,2.47898945897546,0.964533054905707,1.99848462350357,1.16965804222704,0.644613162144895,1.53030665655075,1.10295709559758,0.695603506861264 | ||
|short_description=p2@Llgl1 | |||
}} | }} |
Latest revision as of 20:04, 1 October 2015
Short description: | p2@Llgl1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Llgl1_5end |
Coexpression cluster: | MCL_coexpression_mm9:425 |
Association with transcript: | 0bp_to_NM_001159404, NM_001159405, NM_008502, uc007jge.2, uc007jgf.2, uc007jgg.2_5end |
EntrezGene: | Llgl1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 8.75e-15 | 43 |
ectodermal cell | 2.09e-14 | 44 |
neurectodermal cell | 2.09e-14 | 44 |
neuron | 3.26e-12 | 33 |
neuronal stem cell | 3.26e-12 | 33 |
neuroblast | 3.26e-12 | 33 |
electrically signaling cell | 3.26e-12 | 33 |
electrically responsive cell | 1.25e-11 | 39 |
electrically active cell | 1.25e-11 | 39 |
CNS neuron (sensu Vertebrata) | 5.80e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.80e-11 | 23 |
embryonic cell | 4.00e-09 | 70 |
stem cell | 1.10e-07 | 97 |
somatic stem cell | 3.86e-07 | 91 |
multi fate stem cell | 3.86e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.35e-08 | 73 |
nervous system | 2.50e-08 | 75 |
ectoderm-derived structure | 6.81e-08 | 95 |
ectoderm | 6.81e-08 | 95 |
presumptive ectoderm | 6.81e-08 | 95 |
anterior region of body | 6.41e-07 | 43 |