FFCP PHASE1:Mm9::chr15:90880254..90880298,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr15:90880254..90880298,- to FFCP PHASE1:Mm9::chr15:90880254..90880298,-: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=16564 | |EntrezGene=16564 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2596 | |||
|TSSclassifier=NA | |||
|UniProt=F8WGN6,Q9QXL2,Q3TQJ5,Q3UHE7 | |UniProt=F8WGN6,Q9QXL2,Q3TQJ5,Q3UHE7 | ||
|association_with_transcript=80bp_to_ENSMUST00000067205,ENSMUST00000088614,ENSMUST00000109287,ENSMUST00000109288,NM_001109040,NM_001109041,NM_001109042,NM_016705,uc007xhs.2,uc007xht.2,uc007xhu.2,uc007xhv.2_5end | |||
|cluster_id=chr15:90880254..90880298,- | |||
|description=CAGE_peak_1_at_Kif21a_5end | |||
|id=chr15:90880254..90880298,- | |||
|ontology_enrichment_celltype=CL:0000540!2.13e-16!33;CL:0000047!2.13e-16!33;CL:0000031!2.13e-16!33;CL:0000404!2.13e-16!33;CL:0000393!6.86e-13!39;CL:0000211!6.86e-13!39;CL:0000117!6.01e-11!23;CL:0000337!6.01e-11!23;CL:0000221!2.12e-10!44;CL:0000133!2.12e-10!44;CL:0002319!4.22e-10!43;CL:0000055!2.42e-08!50;CL:0002321!2.13e-07!70;CL:0000220!2.13e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.08e-16,33;CL:0000047,2.08e-16,33;CL:0000031,2.08e-16,33;CL:0000404,2.08e-16,33;CL:0000393,6.75e-13,39;CL:0000211,6.75e-13,39;CL:0000117,5.93e-11,23;CL:0000337,5.93e-11,23;CL:0000221,2.10e-10,44;CL:0000133,2.10e-10,44;CL:0002319,4.17e-10,43;CL:0002321,2.11e-07,70;CL:0000107,9.93e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.00e-24!102;UBERON:0000924!4.00e-24!102;UBERON:0006601!4.00e-24!102;UBERON:0000073!2.76e-21!75;UBERON:0001016!2.76e-21!75;UBERON:0001017!2.96e-21!73;UBERON:0005743!2.96e-21!73;UBERON:0000033!1.64e-17!63;UBERON:0002346!1.68e-15!71;UBERON:0003075!1.68e-15!71;UBERON:0007284!1.68e-15!71;UBERON:0001049!1.12e-14!52;UBERON:0005068!1.12e-14!52;UBERON:0006241!1.12e-14!52;UBERON:0007135!1.12e-14!52;UBERON:0000955!1.95e-14!50;UBERON:0006238!1.95e-14!50;UBERON:0002616!3.90e-14!49;UBERON:0002020!1.16e-13!34;UBERON:0003056!4.13e-13!49;UBERON:0002791!6.17e-12!29;UBERON:0003528!6.17e-12!29;UBERON:0001893!6.17e-12!29;UBERON:0003080!2.00e-11!40;UBERON:0002780!7.59e-11!39;UBERON:0001890!7.59e-11!39;UBERON:0006240!7.59e-11!39;UBERON:0000956!3.46e-08!21;UBERON:0001869!3.46e-08!21;UBERON:0000203!3.46e-08!21;UBERON:0000468!5.18e-08!333;UBERON:0002021!7.81e-07!10;UBERON:0000411!7.81e-07!10;UBERON:0001950!7.81e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.16e-27,95;UBERON:0000924,7.16e-27,95;UBERON:0006601,7.16e-27,95;UBERON:0001016,2.68e-21,75;UBERON:0001017,2.87e-21,73;UBERON:0010371,1.03e-20,73;UBERON:0002346,3.09e-18,64;UBERON:0003075,3.09e-18,64;UBERON:0007284,3.09e-18,64;UBERON:0000073,5.58e-16,54;UBERON:0001049,1.10e-14,52;UBERON:0005068,1.10e-14,52;UBERON:0006241,1.10e-14,52;UBERON:0007135,1.10e-14,52;UBERON:0002020,1.14e-13,34;UBERON:0003056,4.06e-13,49;UBERON:0000955,1.52e-12,47;UBERON:0006238,1.52e-12,47;UBERON:0002616,2.99e-12,46;UBERON:0003528,6.08e-12,29;UBERON:0002791,6.08e-12,29;UBERON:0001893,6.08e-12,29;UBERON:0003080,1.98e-11,40;UBERON:0002780,7.49e-11,39;UBERON:0001890,7.49e-11,39;UBERON:0006240,7.49e-11,39;UBERON:0010314,2.29e-09,92;UBERON:0000956,3.43e-08,21;UBERON:0001869,3.43e-08,21;UBERON:0000203,3.43e-08,21;UBERON:0002021,7.75e-07,10;UBERON:0000411,7.75e-07,10;UBERON:0001950,7.75e-07,10;UBERON:0002410,9.93e-07,9 | |||
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| ||
|short_description=p1@Kif21a | |||
}} | }} |
Latest revision as of 08:13, 27 September 2015
Short description: | p1@Kif21a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Kif21a_5end |
Coexpression cluster: | MCL_coexpression_mm9:2596 |
Association with transcript: | 80bp_to_ENSMUST00000067205, ENSMUST00000088614, ENSMUST00000109287, ENSMUST00000109288, NM_001109040, NM_001109041, NM_001109042, NM_016705, uc007xhs.2, uc007xht.2, uc007xhu.2, uc007xhv.2_5end |
EntrezGene: | Kif21a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.08e-16 | 33 |
neuronal stem cell | 2.08e-16 | 33 |
neuroblast | 2.08e-16 | 33 |
electrically signaling cell | 2.08e-16 | 33 |
electrically responsive cell | 6.75e-13 | 39 |
electrically active cell | 6.75e-13 | 39 |
CNS neuron (sensu Vertebrata) | 5.93e-11 | 23 |
neuroblast (sensu Vertebrata) | 5.93e-11 | 23 |
ectodermal cell | 2.10e-10 | 44 |
neurectodermal cell | 2.10e-10 | 44 |
neural cell | 4.17e-10 | 43 |
embryonic cell | 2.11e-07 | 70 |
autonomic neuron | 9.93e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 7.16e-27 | 95 |
ectoderm | 7.16e-27 | 95 |
presumptive ectoderm | 7.16e-27 | 95 |
nervous system | 2.68e-21 | 75 |
central nervous system | 2.87e-21 | 73 |
ecto-epithelium | 1.03e-20 | 73 |
neurectoderm | 3.09e-18 | 64 |
neural plate | 3.09e-18 | 64 |
presumptive neural plate | 3.09e-18 | 64 |
regional part of nervous system | 5.58e-16 | 54 |
neural tube | 1.10e-14 | 52 |
neural rod | 1.10e-14 | 52 |
future spinal cord | 1.10e-14 | 52 |
neural keel | 1.10e-14 | 52 |
gray matter | 1.14e-13 | 34 |
pre-chordal neural plate | 4.06e-13 | 49 |
brain | 1.52e-12 | 47 |
future brain | 1.52e-12 | 47 |
regional part of brain | 2.99e-12 | 46 |
brain grey matter | 6.08e-12 | 29 |
regional part of telencephalon | 6.08e-12 | 29 |
telencephalon | 6.08e-12 | 29 |
anterior neural tube | 1.98e-11 | 40 |
regional part of forebrain | 7.49e-11 | 39 |
forebrain | 7.49e-11 | 39 |
future forebrain | 7.49e-11 | 39 |
structure with developmental contribution from neural crest | 2.29e-09 | 92 |
cerebral cortex | 3.43e-08 | 21 |
cerebral hemisphere | 3.43e-08 | 21 |
pallium | 3.43e-08 | 21 |
occipital lobe | 7.75e-07 | 10 |
visual cortex | 7.75e-07 | 10 |
neocortex | 7.75e-07 | 10 |
autonomic nervous system | 9.93e-07 | 9 |